Wall clock time and date at job start Tue Mar 31 2020 05:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 S 1.76198 * 119.99742 * 0.02562 * 7 2 1 10 10 O 1.42099 * 106.40257 * 293.53753 * 9 7 2 11 11 O 1.42096 * 106.40041 * 66.46100 * 9 7 2 12 12 N 1.65602 * 107.21304 * 179.97438 * 9 7 2 13 13 C 1.47029 * 125.64568 * 90.03121 * 12 9 7 14 14 C 1.54327 * 107.26775 * 181.01781 * 13 12 9 15 15 C 1.55156 * 102.94352 * 22.19255 * 14 13 12 16 16 H 1.09002 * 111.00565 * 82.57392 * 15 14 13 17 17 C 1.50704 * 111.00236 * 206.42094 * 15 14 13 18 18 C 1.38235 * 119.99480 * 58.27308 * 17 15 14 19 19 C 1.38243 * 119.99714 * 179.76777 * 18 17 15 20 20 C 1.38233 * 119.99546 * 0.48069 * 19 18 17 21 21 C 1.38236 * 120.00478 * 359.79175 * 20 19 18 22 22 C 1.38230 * 120.00063 * 238.54537 * 17 15 14 23 23 C 1.47424 * 125.65230 * 269.71503 * 12 9 7 24 24 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.88116 * 300.43206 * 13 12 9 26 26 H 1.08992 * 109.88633 * 61.44517 * 13 12 9 27 27 H 1.09003 * 110.71504 * 140.55045 * 14 13 12 28 28 H 1.09001 * 110.72042 * 263.82443 * 14 13 12 29 29 H 1.07997 * 120.00557 * 359.97438 * 18 17 15 30 30 H 1.07997 * 120.00011 * 180.25474 * 19 18 17 31 31 H 1.08007 * 120.00172 * 179.77134 * 20 19 18 32 32 H 1.07999 * 120.00406 * 179.97438 * 21 20 19 33 33 H 1.07997 * 119.99720 * 0.02562 * 22 17 15 34 34 H 1.09003 * 110.36397 * 274.75152 * 23 12 9 35 35 H 1.09000 * 110.36201 * 37.07242 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 16 1.1235 -2.7200 0.0005 10 8 0.4510 -2.7950 1.2500 11 8 0.4519 -2.7955 -1.2494 12 7 2.2484 -3.9354 0.0005 13 6 2.8299 -4.5647 1.1953 14 6 3.8440 -5.6214 0.7089 15 6 4.1919 -5.1359 -0.7230 16 1 4.9541 -4.3571 -0.6972 17 6 4.6283 -6.2869 -1.5925 18 6 3.7814 -7.3607 -1.7939 19 6 4.1798 -8.4144 -2.5953 20 6 5.4289 -8.3986 -3.1871 21 6 6.2780 -7.3274 -2.9812 22 6 5.8776 -6.2714 -2.1840 23 6 2.8277 -4.5700 -1.1974 24 1 -0.4850 0.8401 0.0004 25 1 3.3384 -3.8134 1.7996 26 1 2.0453 -5.0427 1.7816 27 1 4.7316 -5.6239 1.3416 28 1 3.3866 -6.6104 0.6804 29 1 2.8072 -7.3751 -1.3279 30 1 3.5165 -9.2514 -2.7560 31 1 5.7416 -9.2235 -3.8103 32 1 7.2540 -7.3153 -3.4433 33 1 6.5410 -5.4347 -2.0227 34 1 2.1824 -5.3748 -1.5499 35 1 2.9770 -3.8303 -1.9838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050600522.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:05 Heat of formation + Delta-G solvation = -93.957511 kcal Electronic energy + Delta-G solvation = -19785.851486 eV Core-core repulsion = 16680.622566 eV Total energy + Delta-G solvation = -3105.228920 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.64987 -38.66777 -37.46957 -36.19772 -35.21912 -33.45382 -31.71775 -30.62263 -28.98921 -28.28772 -24.24419 -23.34921 -22.87406 -21.02600 -20.74699 -19.28974 -18.35731 -17.83752 -17.18570 -16.72964 -16.17497 -15.94028 -15.70018 -15.41017 -14.50778 -14.45588 -14.29535 -14.09867 -14.01899 -13.74348 -13.59940 -13.32215 -13.03163 -12.73194 -12.57885 -12.51055 -12.31567 -12.22056 -12.16369 -12.01026 -11.67672 -11.44263 -11.27496 -11.02374 -9.83726 -9.70740 -9.50641 -8.77094 -7.52363 0.21772 0.50887 0.58400 1.32195 1.33237 1.49651 2.18941 2.54678 2.84392 2.91760 3.59767 3.68374 3.76966 3.86980 4.12870 4.23372 4.30215 4.36141 4.39210 4.40714 4.53365 4.64980 4.70690 4.78414 4.92106 4.95905 5.08767 5.14600 5.18670 5.23125 5.29915 5.39418 5.65442 5.70400 5.78605 5.82124 5.88137 6.19894 6.74470 8.18375 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027634 B = 0.004669 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.993551 B = 5995.029306 C = 6361.269193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.068 3.932 3 Si 0.993 3.007 4 H -0.254 1.254 5 H -0.261 1.261 6 H -0.247 1.247 7 C -1.041 5.041 8 H 0.119 0.881 9 S 2.731 3.269 10 O -1.039 7.039 11 O -1.041 7.041 12 N -1.024 6.024 13 C 0.110 3.890 14 C -0.104 4.104 15 C -0.053 4.053 16 H 0.101 0.899 17 C -0.078 4.078 18 C -0.130 4.130 19 C -0.126 4.126 20 C -0.130 4.130 21 C -0.124 4.124 22 C -0.123 4.123 23 C 0.124 3.876 24 H 0.300 0.700 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.134 0.866 34 H 0.064 0.936 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.980 -13.439 -3.250 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.811 3.189 4 H -0.178 1.178 5 H -0.185 1.185 6 H -0.170 1.170 7 C -1.174 5.174 8 H 0.137 0.863 9 S 2.834 3.166 10 O -1.029 7.029 11 O -1.031 7.031 12 N -0.863 5.863 13 C -0.015 4.015 14 C -0.143 4.143 15 C -0.073 4.073 16 H 0.120 0.880 17 C -0.079 4.079 18 C -0.148 4.148 19 C -0.144 4.144 20 C -0.147 4.147 21 C -0.142 4.142 22 C -0.141 4.141 23 C -0.001 4.001 24 H 0.110 0.890 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.126 0.874 28 H 0.105 0.895 29 H 0.138 0.862 30 H 0.154 0.846 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.152 0.848 34 H 0.083 0.917 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.759 -13.459 -3.230 19.517 hybrid contribution 0.097 1.258 0.019 1.262 sum 13.856 -12.202 -3.211 18.740 Atomic orbital electron populations 1.69992 1.08853 1.32449 1.41382 1.26086 0.95421 1.05492 0.87436 0.85089 0.79142 0.74526 0.80145 1.17764 1.18508 1.16975 1.30965 1.07164 1.12519 1.66784 0.86269 0.99582 0.72238 0.73378 0.71373 1.93291 1.74348 1.88332 1.46964 1.93294 1.74439 1.88352 1.47055 1.58635 1.61328 1.52913 1.13394 1.21884 0.96561 0.96140 0.86939 1.22727 0.98842 0.97780 0.94937 1.21364 0.95668 0.95843 0.94391 0.88039 1.19651 0.95061 0.94929 0.98255 1.21204 0.99768 0.94228 0.99558 1.21397 0.97194 0.98658 0.97186 1.21475 0.94081 0.99194 0.99998 1.21442 1.00688 0.93734 0.98326 1.21304 0.95666 0.99585 0.97540 1.22173 0.94129 0.96827 0.86985 0.89005 0.91536 0.92166 0.87413 0.89542 0.86203 0.84555 0.84010 0.83931 0.84766 0.91732 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.49 13.19 21.45 0.28 -54.21 16 2 C 0.07 3.87 5.46 84.66 0.46 4.34 16 3 Si 0.99 41.72 29.54 68.60 2.03 43.75 16 4 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 6 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 7 C -1.04 -58.89 9.75 67.74 0.66 -58.23 16 8 H 0.12 6.08 7.81 -2.91 -0.02 6.06 16 9 S 2.73 153.63 5.22 -56.49 -0.29 153.33 16 10 O -1.04 -64.26 17.60 -128.00 -2.25 -66.51 16 11 O -1.04 -64.80 17.60 -128.00 -2.25 -67.05 16 12 N -1.02 -43.20 3.70 -506.00 -1.87 -45.07 16 13 C 0.11 3.68 6.99 86.73 0.61 4.28 16 14 C -0.10 -2.47 6.36 31.78 0.20 -2.27 16 15 C -0.05 -1.36 3.28 -10.07 -0.03 -1.39 16 16 H 0.10 2.43 7.96 -2.39 -0.02 2.41 16 17 C -0.08 -1.78 5.00 -19.87 -0.10 -1.88 16 18 C -0.13 -2.87 8.29 22.27 0.18 -2.69 16 19 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 20 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 21 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 22 C -0.12 -2.41 9.69 22.27 0.22 -2.19 16 23 C 0.12 4.36 6.39 86.93 0.56 4.91 16 24 H 0.30 16.30 8.31 -92.71 -0.77 15.53 16 25 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.09 1.85 7.08 -2.39 -0.02 1.84 16 29 H 0.12 2.67 7.00 -2.91 -0.02 2.65 16 30 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 31 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.13 2.21 7.99 -2.91 -0.02 2.18 16 34 H 0.06 2.18 6.75 -2.39 -0.02 2.17 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -78.34 309.14 0.15 -78.19 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 1.08 Total: 18.59 kcal Atomic # 6 Polarization: -64.45 SS G_CDS: 3.43 Total: -61.02 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -1.59 Total: -99.28 kcal Atomic # 8 Polarization: -129.06 SS G_CDS: -4.51 Total: -133.56 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 153.63 SS G_CDS: -0.29 Total: 153.33 kcal Total: -78.34 0.15 -78.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050600522.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.763 kcal (2) G-P(sol) polarization free energy of solvation -78.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds