Wall clock time and date at job start Tue Mar 31 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99901 * 2 1 4 4 H 1.48505 * 109.47063 * 269.99826 * 3 2 1 5 5 H 1.48505 * 109.47085 * 29.99475 * 3 2 1 6 6 H 1.48494 * 109.47485 * 149.99643 * 3 2 1 7 7 C 1.37871 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00362 * 359.97438 * 7 2 1 9 9 S 1.76207 * 120.00093 * 180.02562 * 7 2 1 10 10 O 1.42102 * 106.40068 * 66.45869 * 9 7 2 11 11 O 1.42099 * 106.40201 * 293.54210 * 9 7 2 12 12 N 1.65596 * 107.21868 * 179.97438 * 9 7 2 13 13 C 1.47431 * 125.64875 * 270.04183 * 12 9 7 14 14 C 1.55392 * 104.87127 * 204.09907 * 13 12 9 15 15 C 1.55157 * 101.36576 * 323.01456 * 14 13 12 16 16 H 1.09002 * 110.72219 * 277.04408 * 15 14 13 17 17 C 1.50704 * 110.71723 * 153.94965 * 15 14 13 18 18 C 1.38236 * 119.99753 * 303.56848 * 17 15 14 19 19 C 1.38237 * 119.99729 * 179.74920 * 18 17 15 20 20 C 1.38240 * 119.99693 * 0.54565 * 19 18 17 21 21 C 1.38234 * 120.00276 * 359.70807 * 20 19 18 22 22 C 1.38231 * 119.99578 * 123.84428 * 17 15 14 23 23 C 1.47019 * 125.64982 * 90.00158 * 12 9 7 24 24 H 0.96993 * 119.99930 * 0.02562 * 1 2 3 25 25 H 1.08999 * 110.36190 * 322.92959 * 13 12 9 26 26 H 1.08998 * 110.36491 * 85.14638 * 13 12 9 27 27 H 1.09004 * 111.18705 * 204.97719 * 14 13 12 28 28 H 1.09001 * 111.02055 * 80.98222 * 14 13 12 29 29 H 1.07996 * 120.00379 * 359.97438 * 18 17 15 30 30 H 1.07993 * 120.00231 * 180.27753 * 19 18 17 31 31 H 1.08002 * 120.00108 * 179.72802 * 20 19 18 32 32 H 1.07992 * 120.00238 * 179.97438 * 21 20 19 33 33 H 1.07991 * 120.00797 * 0.02562 * 22 17 15 34 34 H 1.09001 * 109.88251 * 59.55243 * 23 12 9 35 35 H 1.09003 * 110.01193 * 298.46618 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 16 3.7666 -1.1940 0.0012 10 8 4.1674 -0.6492 1.2510 11 8 4.1684 -0.6498 -1.2484 12 7 4.2568 -2.7757 0.0025 13 6 4.5099 -3.5959 1.2011 14 6 5.4947 -4.7007 0.7278 15 6 4.9694 -4.9856 -0.7041 16 1 4.1300 -5.6804 -0.6759 17 6 6.0728 -5.5207 -1.5802 18 6 7.2373 -4.7946 -1.7458 19 6 8.2515 -5.2878 -2.5453 20 6 8.0965 -6.5019 -3.1880 21 6 6.9298 -7.2255 -3.0264 22 6 5.9179 -6.7349 -2.2225 23 6 4.5110 -3.5950 -1.1916 24 1 -0.4850 0.8400 -0.0004 25 1 4.9667 -2.9915 1.9848 26 1 3.5816 -4.0412 1.5590 27 1 5.4210 -5.5892 1.3549 28 1 6.5183 -4.3269 0.7013 29 1 7.3564 -3.8437 -1.2479 30 1 9.1632 -4.7228 -2.6712 31 1 8.8870 -6.8853 -3.8161 32 1 6.8085 -8.1737 -3.5288 33 1 5.0061 -7.2998 -2.0969 34 1 5.2943 -3.1370 -1.7955 35 1 3.5981 -3.6907 -1.7795 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050600523.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:07 Heat of formation + Delta-G solvation = -54.501274 kcal Electronic energy + Delta-G solvation = -19880.187407 eV Core-core repulsion = 16776.669438 eV Total energy + Delta-G solvation = -3103.517969 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.74146 -37.55677 -35.65128 -34.43791 -33.03181 -32.42010 -30.94477 -29.44614 -27.90928 -26.38397 -23.15204 -22.54601 -21.80936 -20.00496 -18.73294 -17.60563 -16.95761 -16.68128 -15.89948 -15.25391 -14.93479 -14.70122 -14.26908 -13.50648 -13.42437 -13.37905 -13.20207 -12.96735 -12.92273 -12.62883 -12.34393 -11.72411 -11.44068 -11.28856 -11.22760 -11.15523 -10.81314 -10.73416 -10.62803 -10.56474 -10.39052 -9.83305 -9.20746 -9.13693 -8.95520 -8.70673 -8.19419 -6.80110 -5.33551 1.29950 1.36218 1.98231 3.06896 3.17692 3.26440 3.72079 3.95289 4.20209 4.56906 4.65047 4.73651 4.91003 4.94606 4.98578 5.09699 5.28562 5.42571 5.44618 5.49369 5.59119 5.70490 5.88191 5.95211 5.98165 6.01455 6.03717 6.19988 6.23086 6.34042 6.42909 6.46924 6.65925 6.71533 6.96246 7.22868 7.49378 8.22470 8.70830 10.32465 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033943 B = 0.004681 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.722719 B = 5979.850552 C = 6065.804435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.153 3.847 3 Si 0.801 3.199 4 H -0.246 1.246 5 H -0.254 1.254 6 H -0.220 1.220 7 C -1.016 5.016 8 H 0.121 0.879 9 S 2.690 3.310 10 O -1.004 7.004 11 O -1.006 7.006 12 N -1.013 6.013 13 C 0.119 3.881 14 C -0.120 4.120 15 C -0.063 4.063 16 H 0.092 0.908 17 C -0.066 4.066 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.128 4.128 21 C -0.121 4.121 22 C -0.116 4.116 23 C 0.133 3.867 24 H 0.281 0.719 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.067 0.933 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.141 -13.380 -2.620 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.067 4.067 3 Si 0.620 3.380 4 H -0.169 1.169 5 H -0.178 1.178 6 H -0.142 1.142 7 C -1.151 5.151 8 H 0.139 0.861 9 S 2.794 3.206 10 O -0.995 6.995 11 O -0.997 6.997 12 N -0.849 5.849 13 C -0.007 4.007 14 C -0.159 4.159 15 C -0.083 4.083 16 H 0.111 0.889 17 C -0.067 4.067 18 C -0.131 4.131 19 C -0.137 4.137 20 C -0.146 4.146 21 C -0.139 4.139 22 C -0.134 4.134 23 C 0.007 3.993 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.525 -12.461 -2.614 17.860 hybrid contribution -0.589 0.415 -0.106 0.728 sum 11.935 -12.046 -2.721 17.175 Atomic orbital electron populations 1.69990 1.06572 1.29031 1.39683 1.24432 0.94797 0.98801 0.88631 0.87881 0.83617 0.84559 0.81896 1.16946 1.17786 1.14195 1.30550 1.15766 1.02154 1.66587 0.86118 1.00998 0.77122 0.69323 0.73151 1.93453 1.85422 1.75276 1.45301 1.93401 1.85354 1.75475 1.45424 1.58624 1.85027 1.30026 1.11238 1.21988 0.98262 0.92195 0.88207 1.22981 0.99541 0.98642 0.94763 1.21281 0.95968 0.96820 0.94210 0.88943 1.19767 0.95010 0.94591 0.97285 1.21120 0.93263 0.99916 0.98760 1.21144 0.98962 0.96182 0.97380 1.21119 0.97831 0.95452 1.00218 1.21107 0.93949 0.99866 0.99019 1.21079 0.99109 0.95793 0.97391 1.21639 1.00765 0.89190 0.87748 0.90899 0.90143 0.91707 0.90129 0.90569 0.85732 0.86168 0.86411 0.86279 0.85999 0.91451 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.08 13.96 55.43 0.77 -23.31 16 2 C 0.15 4.46 5.47 -17.82 -0.10 4.36 16 3 Si 0.80 20.82 26.54 -169.99 -4.51 16.31 16 4 H -0.25 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.25 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.22 -5.81 5.61 56.52 0.32 -5.49 16 7 C -1.02 -28.95 10.29 30.60 0.31 -28.63 16 8 H 0.12 3.48 8.06 -52.48 -0.42 3.05 16 9 S 2.69 68.91 4.43 -107.50 -0.48 68.43 16 10 O -1.00 -27.24 15.34 -57.17 -0.88 -28.11 16 11 O -1.01 -27.44 16.42 -57.17 -0.94 -28.37 16 12 N -1.01 -20.23 3.70 -111.13 -0.41 -20.64 16 13 C 0.12 1.93 7.12 -2.26 -0.02 1.91 16 14 C -0.12 -1.50 6.51 -24.32 -0.16 -1.66 16 15 C -0.06 -0.82 3.16 -89.94 -0.28 -1.10 16 16 H 0.09 1.07 7.95 -51.93 -0.41 0.66 16 17 C -0.07 -0.80 4.93 -104.62 -0.52 -1.32 16 18 C -0.11 -1.37 8.11 -39.58 -0.32 -1.69 16 19 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 20 C -0.13 -1.26 10.05 -39.58 -0.40 -1.65 16 21 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 22 C -0.12 -1.24 9.68 -39.58 -0.38 -1.62 16 23 C 0.13 2.25 6.49 -3.07 -0.02 2.23 16 24 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.08 1.31 7.78 -51.93 -0.40 0.90 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.92 6.95 -51.93 -0.36 0.56 16 29 H 0.12 1.53 7.31 -52.49 -0.38 1.15 16 30 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 31 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 33 H 0.12 1.10 7.98 -52.49 -0.42 0.68 16 34 H 0.07 1.15 6.92 -51.93 -0.36 0.79 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 301.94 15.07 4.55 4.55 Total: -1.00 -33.33 301.94 -9.08 -42.42 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -4.52 Total: 1.15 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: -2.67 Total: -32.42 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.36 Total: -43.95 kcal Atomic # 8 Polarization: -54.67 SS G_CDS: -1.82 Total: -56.49 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.51 Total: 16.31 kcal Atomic # 16 Polarization: 68.91 SS G_CDS: -0.48 Total: 68.43 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.33 -9.08 -42.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050600523.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.086 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds