Wall clock time and date at job start Tue Mar 31 2020 05:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86796 * 120.00242 * 2 1 4 4 H 1.48503 * 109.47025 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47090 * 300.00062 * 3 2 1 6 6 H 1.48499 * 109.46926 * 60.00389 * 3 2 1 7 7 C 1.38764 * 119.99473 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99348 * 180.02562 * 7 2 1 9 9 O 1.34913 * 120.00124 * 359.97438 * 7 2 1 10 10 C 1.34313 * 116.99875 * 180.02562 * 9 7 2 11 11 O 1.21219 * 119.99906 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00227 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.47115 * 179.97438 * 12 10 9 14 14 O 1.42904 * 109.47009 * 179.97438 * 13 12 10 15 15 C 1.35898 * 116.99940 * 179.97438 * 14 13 12 16 16 C 1.38747 * 120.05546 * 0.02562 * 15 14 13 17 17 C 1.38125 * 119.94590 * 179.97438 * 16 15 14 18 18 C 1.38289 * 120.05159 * 359.97438 * 17 16 15 19 19 C 1.38243 * 120.11362 * 359.97438 * 18 17 16 20 20 C 1.38163 * 120.05442 * 0.02562 * 19 18 17 21 21 N 1.48007 * 120.02705 * 180.02562 * 20 19 18 22 22 O 1.21798 * 120.00276 * 359.97438 * 21 20 19 23 23 O 1.21799 * 120.00116 * 179.97438 * 21 20 19 24 24 H 0.96996 * 119.99871 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47036 * 59.99760 * 12 10 9 26 26 H 1.08998 * 109.46929 * 300.00222 * 12 10 9 27 27 H 1.08999 * 109.47276 * 60.00016 * 13 12 10 28 28 H 1.08995 * 109.46990 * 300.00058 * 13 12 10 29 29 H 1.08000 * 120.03041 * 359.95195 * 16 15 14 30 30 H 1.07993 * 119.97844 * 179.72247 * 17 16 15 31 31 H 1.08004 * 119.94567 * 179.97438 * 18 17 16 32 32 H 1.08001 * 119.97538 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7085 1.3462 -0.0006 5 1 1.8897 2.3964 -1.2125 6 1 1.8898 2.3963 1.2125 7 6 2.0081 -1.2018 -0.0005 8 1 3.0881 -1.2018 -0.0001 9 8 1.3335 -2.3701 -0.0005 10 6 2.0649 -3.4966 -0.0005 11 8 3.2755 -3.4332 -0.0010 12 6 1.3807 -4.8394 -0.0011 13 6 2.4345 -5.9487 -0.0016 14 8 1.7857 -7.2219 -0.0016 15 6 2.5845 -8.3214 -0.0026 16 6 3.9645 -8.1777 -0.0030 17 6 4.7742 -9.2967 -0.0035 18 6 4.2104 -10.5595 -0.0029 19 6 2.8357 -10.7053 -0.0014 20 6 2.0215 -9.5891 -0.0010 21 7 0.5497 -9.7459 0.0012 22 8 0.0559 -10.8593 0.0022 23 8 -0.1676 -8.7616 0.0021 24 1 -0.4850 0.8400 0.0004 25 1 0.7583 -4.9296 -0.8913 26 1 0.7576 -4.9300 0.8886 27 1 3.0573 -5.8586 0.8883 28 1 3.0572 -5.8578 -0.8916 29 1 4.4052 -7.1918 -0.0034 30 1 5.8484 -9.1855 -0.0083 31 1 4.8452 -11.4333 -0.0037 32 1 2.3978 -11.6925 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051977322.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:29 Heat of formation + Delta-G solvation = -94.905001 kcal Electronic energy + Delta-G solvation = -20902.210751 eV Core-core repulsion = 17218.354779 eV Total energy + Delta-G solvation = -3683.855972 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.15120 -40.49177 -39.13984 -38.04951 -36.37297 -35.42113 -32.54517 -32.24004 -31.78312 -30.31380 -26.51232 -26.03003 -24.52957 -22.60553 -22.37339 -20.02345 -19.51028 -18.58738 -18.20934 -17.81569 -17.50726 -16.50641 -16.44659 -16.15206 -15.60505 -14.97302 -14.86397 -14.46258 -14.33921 -13.80392 -13.46070 -12.75107 -12.44637 -12.30754 -12.18826 -11.65339 -11.47738 -11.44746 -11.27014 -11.00537 -10.94197 -10.87528 -10.49448 -10.45642 -9.96031 -9.89220 -9.21444 -8.94194 -8.65985 -6.48353 -4.17282 -0.22089 0.67960 1.27150 1.41441 2.52058 2.98125 3.03348 3.15287 3.22473 3.40098 3.88924 4.04530 4.19519 4.39532 4.51828 4.61783 4.73496 4.89548 4.96807 5.09028 5.10692 5.33418 5.38869 5.52067 5.73555 5.90530 5.94943 6.02623 6.38085 6.60823 6.83666 7.31644 7.73977 7.85851 8.57469 8.99542 9.73147 10.69161 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.032401 B = 0.003265 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.964386 B = 8572.921964 C = 9416.440281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.043 3.957 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.386 4.386 8 H 0.098 0.902 9 O -0.207 6.207 10 C 0.401 3.599 11 O -0.563 6.563 12 C -0.102 4.102 13 C 0.069 3.931 14 O -0.280 6.280 15 C 0.207 3.793 16 C -0.213 4.213 17 C -0.026 4.026 18 C -0.163 4.163 19 C -0.022 4.022 20 C -0.087 4.087 21 N 0.036 4.964 22 O -0.188 6.188 23 O -0.130 6.130 24 H 0.271 0.729 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.157 0.843 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.263 -18.955 -0.011 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.162 4.162 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.462 4.462 8 H 0.115 0.885 9 O -0.113 6.113 10 C 0.248 3.752 11 O -0.462 6.462 12 C -0.140 4.140 13 C -0.005 4.005 14 O -0.190 6.190 15 C 0.157 3.843 16 C -0.232 4.232 17 C -0.044 4.044 18 C -0.182 4.182 19 C -0.041 4.041 20 C -0.172 4.172 21 N 0.553 4.447 22 O -0.396 6.396 23 O -0.353 6.353 24 H 0.081 0.919 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.174 0.826 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.843 -18.699 -0.013 20.685 hybrid contribution 0.216 0.846 0.001 0.873 sum 9.059 -17.853 -0.012 20.020 Atomic orbital electron populations 1.70002 1.06035 1.27811 1.45800 1.25380 0.95846 0.98960 0.96008 0.85593 0.79394 0.79909 0.78219 1.18940 1.20081 1.20078 1.21299 0.92430 0.79642 1.52791 0.88482 1.83864 1.39264 1.13296 1.74896 1.22644 0.86386 0.86979 0.79172 1.90560 1.15601 1.88223 1.51852 1.20799 0.98096 0.88316 1.06810 1.22781 0.95596 0.78665 1.03508 1.86329 1.34347 1.13197 1.85152 1.18711 0.90211 0.85887 0.89534 1.21553 0.90836 1.02042 1.08795 1.21445 1.01023 0.91574 0.90390 1.21096 0.93376 0.98466 1.05273 1.20927 0.93363 0.97681 0.92158 1.20566 0.80525 0.93669 1.22445 1.43334 1.03011 1.00560 0.97775 1.94499 1.77308 1.12435 1.55322 1.94639 1.59028 1.29783 1.51802 0.91935 0.87500 0.87495 0.90258 0.90249 0.82554 0.83740 0.83621 0.82577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.90 13.67 55.48 0.76 -24.15 16 2 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 3 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.39 -11.16 9.65 30.93 0.30 -10.86 16 8 H 0.10 2.81 6.86 -52.48 -0.36 2.45 16 9 O -0.21 -5.78 9.75 -20.69 -0.20 -5.98 16 10 C 0.40 9.36 7.91 36.01 0.28 9.65 16 11 O -0.56 -14.02 15.22 -19.06 -0.29 -14.31 16 12 C -0.10 -1.77 6.18 -27.88 -0.17 -1.94 16 13 C 0.07 1.00 4.03 37.16 0.15 1.15 16 14 O -0.28 -4.08 8.15 -41.54 -0.34 -4.42 16 15 C 0.21 2.59 6.67 -39.22 -0.26 2.33 16 16 C -0.21 -2.04 9.04 -39.43 -0.36 -2.40 16 17 C -0.03 -0.18 10.04 -39.60 -0.40 -0.58 16 18 C -0.16 -1.05 10.04 -39.56 -0.40 -1.45 16 19 C -0.02 -0.20 9.55 -39.61 -0.38 -0.58 16 20 C -0.09 -1.09 6.87 -79.81 -0.55 -1.64 16 21 N 0.04 0.54 4.45 34.03 0.15 0.69 16 22 O -0.19 -2.83 18.45 -29.46 -0.54 -3.38 16 23 O -0.13 -2.23 17.24 -36.49 -0.63 -2.86 16 24 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 26 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 27 H 0.08 1.09 7.62 -51.93 -0.40 0.70 16 28 H 0.08 1.10 7.62 -51.93 -0.40 0.70 16 29 H 0.16 1.40 6.30 -52.49 -0.33 1.07 16 30 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 31 H 0.15 0.49 8.06 -52.48 -0.42 0.06 16 32 H 0.16 1.12 7.61 -52.49 -0.40 0.72 16 LS Contribution 299.97 15.07 4.52 4.52 Total: -1.00 -34.15 299.97 -6.18 -40.32 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -2.71 Total: -1.04 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.87 Total: -5.22 kcal Atomic # 7 Polarization: -24.36 SS G_CDS: 0.91 Total: -23.45 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -2.00 Total: -30.94 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.15 -6.18 -40.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051977322.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.580 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds