Wall clock time and date at job start Tue Mar 31 2020 05:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86796 * 119.99602 * 2 1 4 4 H 1.48501 * 109.47071 * 240.00151 * 3 2 1 5 5 H 1.48501 * 109.47396 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47432 * 120.00562 * 3 2 1 7 7 C 1.38799 * 120.00408 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00519 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99626 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99938 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47266 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00098 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99912 * 180.02562 * 11 10 9 14 14 C 1.46536 * 124.97702 * 180.02562 * 13 11 10 15 15 C 1.53740 * 105.20144 * 180.02562 * 14 13 11 16 16 C 1.51219 * 104.58207 * 359.97438 * 15 14 13 17 17 C 1.38206 * 130.93645 * 179.97438 * 16 15 14 18 18 C 1.38186 * 120.18490 * 179.70252 * 17 16 15 19 19 C 1.38533 * 119.79833 * 0.56751 * 18 17 16 20 20 F 1.35104 * 119.91428 * 179.72551 * 19 18 17 21 21 C 1.38053 * 120.16953 * 359.45787 * 19 18 17 22 22 C 1.38579 * 108.55769 * 359.97438 * 16 15 14 23 23 H 0.96997 * 120.00342 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47001 * 59.99715 * 10 9 7 25 25 H 1.09000 * 109.46982 * 300.00383 * 10 9 7 26 26 H 1.08999 * 110.30039 * 61.08230 * 14 13 11 27 27 H 1.09000 * 110.29726 * 298.94852 * 14 13 11 28 28 H 1.08996 * 110.41268 * 241.21794 * 15 14 13 29 29 H 1.09005 * 110.41229 * 118.77020 * 15 14 13 30 30 H 1.07997 * 119.91154 * 0.02562 * 17 16 15 31 31 H 1.07997 * 120.10189 * 180.29892 * 18 17 16 32 32 H 1.07996 * 119.87185 * 180.26964 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0021 13 7 2.8444 -6.3430 -0.0008 14 6 2.4516 -7.7548 -0.0018 15 6 3.7729 -8.5408 -0.0002 16 6 4.8483 -7.4778 0.0012 17 6 6.2263 -7.5837 0.0034 18 6 7.0106 -6.4460 -0.0020 19 6 6.4116 -5.1969 0.0023 20 9 7.1762 -4.0830 0.0027 21 6 5.0354 -5.0873 0.0006 22 6 4.2384 -6.2334 -0.0002 23 1 -0.4850 0.8400 -0.0004 24 1 3.1246 -3.7312 0.8894 25 1 3.1246 -3.7312 -0.8905 26 1 1.8750 -7.9862 -0.8974 27 1 1.8726 -7.9868 0.8920 28 1 3.8494 -9.1576 -0.8956 29 1 3.8469 -9.1581 0.8952 30 1 6.6915 -8.5583 0.0040 31 1 8.0873 -6.5303 -0.0052 32 1 4.5736 -4.1111 -0.0004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058745976.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:19 Heat of formation + Delta-G solvation = -40.849764 kcal Electronic energy + Delta-G solvation = -19008.936516 eV Core-core repulsion = 15782.550215 eV Total energy + Delta-G solvation = -3226.386300 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.063 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.94219 -41.19609 -38.57363 -36.06289 -33.18482 -32.47501 -30.02577 -29.51564 -28.59913 -25.54841 -23.60703 -23.34402 -21.59386 -20.10205 -18.06415 -17.17514 -17.03291 -16.48378 -16.34357 -15.56819 -15.54725 -14.90192 -14.82929 -14.60061 -14.10991 -13.71063 -13.56050 -13.23082 -12.65232 -12.58543 -12.45201 -12.29127 -11.99301 -11.81558 -11.21844 -11.06903 -11.05494 -10.76672 -10.32290 -9.87916 -9.79416 -9.09979 -8.90661 -8.32474 -7.95372 -6.59174 -6.26118 -3.98791 0.94491 1.02304 2.54344 2.73241 3.19334 3.22793 3.27264 3.41117 3.45533 4.05047 4.15972 4.22477 4.28638 4.70862 4.73643 4.86155 4.91256 5.09457 5.14645 5.23862 5.40665 5.47348 5.58099 5.62789 5.69580 5.72029 5.85820 5.93668 6.03978 6.13306 6.22787 6.69812 7.32360 7.55559 8.12344 8.30709 9.19312 10.81269 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.018971 B = 0.005288 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.599012 B = 5293.476935 C = 6743.206394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.076 3.924 3 Si 0.919 3.081 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.074 0.926 9 S -0.057 6.057 10 C -0.159 4.159 11 C 0.544 3.456 12 O -0.487 6.487 13 N -0.557 5.557 14 C 0.105 3.895 15 C -0.082 4.082 16 C -0.155 4.155 17 C -0.045 4.045 18 C -0.184 4.184 19 C 0.137 3.863 20 F -0.134 7.134 21 C -0.201 4.201 22 C 0.189 3.811 23 H 0.270 0.730 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.042 -17.092 -0.001 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.134 4.134 3 Si 0.745 3.255 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.686 4.686 8 H 0.092 0.908 9 S 0.170 5.830 10 C -0.309 4.309 11 C 0.333 3.667 12 O -0.358 6.358 13 N -0.282 5.282 14 C -0.016 4.016 15 C -0.119 4.119 16 C -0.158 4.158 17 C -0.064 4.064 18 C -0.204 4.204 19 C 0.117 3.883 20 F -0.112 7.112 21 C -0.223 4.223 22 C 0.092 3.908 23 H 0.080 0.920 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 10.868 -17.164 -0.001 20.316 hybrid contribution 2.088 1.553 0.001 2.602 sum 12.957 -15.611 -0.001 20.288 Atomic orbital electron populations 1.69998 1.05979 1.27720 1.46540 1.24983 0.95035 0.99056 0.94299 0.86207 0.79249 0.81045 0.78955 1.19818 1.20745 1.19825 1.22801 0.94915 0.91341 1.59494 0.90790 1.85398 1.04362 0.96473 1.96747 1.23941 1.07116 0.94601 1.05224 1.20398 0.85822 0.85688 0.74764 1.90740 1.14509 1.85073 1.45487 1.46183 1.03805 1.07604 1.70566 1.22065 0.97235 0.78528 1.03797 1.21099 0.90461 0.96421 1.03896 1.20060 0.94179 0.93717 1.07888 1.20148 0.90917 0.98407 0.96916 1.20956 1.00878 0.90664 1.07909 1.17218 0.88003 0.82624 1.00497 1.91533 1.75006 1.51045 1.93623 1.21150 0.92000 0.99960 1.09194 1.17993 0.83389 0.93981 0.95466 0.92027 0.88316 0.88323 0.89714 0.89711 0.88993 0.88990 0.84731 0.84414 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16 2 C 0.08 2.15 5.49 -17.43 -0.10 2.06 16 3 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 10 C -0.16 -3.29 3.98 36.00 0.14 -3.15 16 11 C 0.54 10.54 7.82 -10.98 -0.09 10.46 16 12 O -0.49 -10.94 16.15 5.55 0.09 -10.85 16 13 N -0.56 -8.48 3.13 -112.90 -0.35 -8.83 16 14 C 0.11 1.19 7.06 -3.64 -0.03 1.17 16 15 C -0.08 -0.66 6.94 -27.24 -0.19 -0.85 16 16 C -0.15 -1.64 6.23 -104.25 -0.65 -2.28 16 17 C -0.05 -0.40 10.03 -39.61 -0.40 -0.80 16 18 C -0.18 -1.83 10.04 -39.49 -0.40 -2.22 16 19 C 0.14 1.75 7.28 -39.54 -0.29 1.46 16 20 F -0.13 -1.85 17.26 2.25 0.04 -1.82 16 21 C -0.20 -2.87 8.85 -39.14 -0.35 -3.21 16 22 C 0.19 2.59 6.59 -83.58 -0.55 2.04 16 23 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.10 1.93 6.91 -51.92 -0.36 1.57 16 25 H 0.10 1.92 6.91 -51.92 -0.36 1.57 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.16 2.42 4.21 -52.49 -0.22 2.20 16 LS Contribution 293.85 15.07 4.43 4.43 Total: -1.00 -33.38 293.85 -7.90 -41.28 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -3.02 Total: -1.34 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -2.59 Total: -10.28 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.38 Total: -34.08 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.38 -7.90 -41.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058745976.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.432 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds