Wall clock time and date at job start Tue Mar 31 2020 05:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86796 * 119.99602 * 2 1 4 4 H 1.48501 * 109.47071 * 240.00151 * 3 2 1 5 5 H 1.48501 * 109.47396 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47432 * 120.00562 * 3 2 1 7 7 C 1.38799 * 120.00408 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00519 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99626 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99938 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47266 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00098 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99912 * 180.02562 * 11 10 9 14 14 C 1.46536 * 124.97702 * 180.02562 * 13 11 10 15 15 C 1.53740 * 105.20144 * 180.02562 * 14 13 11 16 16 C 1.51219 * 104.58207 * 359.97438 * 15 14 13 17 17 C 1.38206 * 130.93645 * 179.97438 * 16 15 14 18 18 C 1.38186 * 120.18490 * 179.70252 * 17 16 15 19 19 C 1.38533 * 119.79833 * 0.56751 * 18 17 16 20 20 F 1.35104 * 119.91428 * 179.72551 * 19 18 17 21 21 C 1.38053 * 120.16953 * 359.45787 * 19 18 17 22 22 C 1.38579 * 108.55769 * 359.97438 * 16 15 14 23 23 H 0.96997 * 120.00342 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47001 * 59.99715 * 10 9 7 25 25 H 1.09000 * 109.46982 * 300.00383 * 10 9 7 26 26 H 1.08999 * 110.30039 * 61.08230 * 14 13 11 27 27 H 1.09000 * 110.29726 * 298.94852 * 14 13 11 28 28 H 1.08996 * 110.41268 * 241.21794 * 15 14 13 29 29 H 1.09005 * 110.41229 * 118.77020 * 15 14 13 30 30 H 1.07997 * 119.91154 * 0.02562 * 17 16 15 31 31 H 1.07997 * 120.10189 * 180.29892 * 18 17 16 32 32 H 1.07996 * 119.87185 * 180.26964 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0021 13 7 2.8444 -6.3430 -0.0008 14 6 2.4516 -7.7548 -0.0018 15 6 3.7729 -8.5408 -0.0002 16 6 4.8483 -7.4778 0.0012 17 6 6.2263 -7.5837 0.0034 18 6 7.0106 -6.4460 -0.0020 19 6 6.4116 -5.1969 0.0023 20 9 7.1762 -4.0830 0.0027 21 6 5.0354 -5.0873 0.0006 22 6 4.2384 -6.2334 -0.0002 23 1 -0.4850 0.8400 -0.0004 24 1 3.1246 -3.7312 0.8894 25 1 3.1246 -3.7312 -0.8905 26 1 1.8750 -7.9862 -0.8974 27 1 1.8726 -7.9868 0.8920 28 1 3.8494 -9.1576 -0.8956 29 1 3.8469 -9.1581 0.8952 30 1 6.6915 -8.5583 0.0040 31 1 8.0873 -6.5303 -0.0052 32 1 4.5736 -4.1111 -0.0004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058745976.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:18 Heat of formation + Delta-G solvation = -61.514078 kcal Electronic energy + Delta-G solvation = -19009.832588 eV Core-core repulsion = 15782.550215 eV Total energy + Delta-G solvation = -3227.282372 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.063 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.95113 -42.28438 -39.88453 -37.10534 -34.65643 -34.27801 -31.00498 -30.88030 -29.61319 -27.74123 -24.65132 -24.30183 -22.48860 -21.31611 -19.94417 -18.50879 -18.22005 -17.60129 -17.36115 -16.94320 -16.69945 -16.58643 -16.46079 -15.81875 -15.37302 -15.01414 -14.54160 -14.51730 -14.19355 -13.98968 -13.43956 -13.27202 -13.15142 -12.93112 -12.88813 -12.75643 -12.67714 -12.11495 -11.77784 -11.36991 -11.27209 -11.18846 -10.39164 -9.82556 -8.96269 -8.78004 -8.41174 -6.21718 -0.00962 0.10808 1.05709 1.32717 1.36569 1.40398 1.49511 1.74190 2.19825 2.54375 2.88711 2.93182 3.24534 3.42504 3.42997 3.72172 3.88978 3.96311 4.10795 4.15354 4.20473 4.21267 4.27731 4.58559 4.85849 4.95106 4.99864 5.06037 5.15915 5.21486 5.31173 5.34871 5.81180 6.08462 6.13050 6.68904 6.99845 8.67986 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.018971 B = 0.005288 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.599012 B = 5293.476935 C = 6743.206394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.019 3.981 3 Si 0.997 3.003 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.552 4.552 8 H 0.079 0.921 9 S -0.136 6.136 10 C -0.130 4.130 11 C 0.543 3.457 12 O -0.531 6.531 13 N -0.553 5.553 14 C 0.093 3.907 15 C -0.069 4.069 16 C -0.138 4.138 17 C -0.032 4.032 18 C -0.165 4.165 19 C 0.112 3.888 20 F -0.147 7.147 21 C -0.221 4.221 22 C 0.150 3.850 23 H 0.274 0.726 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.184 0.816 31 H 0.169 0.831 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.242 -19.429 -0.001 25.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.700 4.700 8 H 0.097 0.903 9 S 0.091 5.909 10 C -0.280 4.280 11 C 0.332 3.668 12 O -0.406 6.406 13 N -0.277 5.277 14 C -0.028 4.028 15 C -0.105 4.105 16 C -0.141 4.141 17 C -0.050 4.050 18 C -0.184 4.184 19 C 0.092 3.908 20 F -0.125 7.125 21 C -0.243 4.243 22 C 0.054 3.946 23 H 0.083 0.917 24 H 0.124 0.876 25 H 0.124 0.876 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.201 0.799 31 H 0.186 0.814 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.128 -19.544 -0.001 24.115 hybrid contribution 1.239 2.102 0.001 2.440 sum 15.367 -17.441 -0.001 23.245 Atomic orbital electron populations 1.70150 1.07873 1.28917 1.47451 1.26093 0.95983 1.03163 0.93378 0.85024 0.77905 0.75707 0.79518 1.18722 1.19852 1.18733 1.23120 0.95221 0.91884 1.59752 0.90259 1.85451 1.09405 0.98976 1.97027 1.23741 1.03987 0.94403 1.05918 1.19997 0.85681 0.86067 0.75024 1.90711 1.16073 1.85619 1.48247 1.46032 1.04246 1.08098 1.69284 1.22448 0.99654 0.76504 1.04151 1.21215 0.86932 0.95507 1.06868 1.20486 0.95433 0.92818 1.05366 1.20671 0.89844 1.00015 0.94451 1.21395 1.02618 0.89441 1.04961 1.17489 0.87450 0.83580 1.02253 1.91497 1.75084 1.52004 1.93934 1.21060 0.93143 0.99259 1.10809 1.18245 0.82538 0.95394 0.98442 0.91728 0.87593 0.87600 0.89484 0.89483 0.85908 0.85906 0.79903 0.81380 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.13 13.22 21.65 0.29 -55.84 16 2 C 0.02 1.11 5.49 84.86 0.47 1.58 16 3 Si 1.00 44.44 29.55 68.60 2.03 46.47 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.55 -32.44 9.50 67.95 0.65 -31.80 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.14 -7.76 20.57 -56.49 -1.16 -8.93 16 10 C -0.13 -5.69 3.98 71.24 0.28 -5.41 16 11 C 0.54 22.01 7.82 87.66 0.69 22.69 16 12 O -0.53 -25.17 16.15 -3.05 -0.05 -25.22 16 13 N -0.55 -16.76 3.13 -629.50 -1.97 -18.73 16 14 C 0.09 1.93 7.06 86.62 0.61 2.55 16 15 C -0.07 -0.79 6.94 30.26 0.21 -0.58 16 16 C -0.14 -2.36 6.23 -19.63 -0.12 -2.48 16 17 C -0.03 -0.38 10.03 22.25 0.22 -0.16 16 18 C -0.16 -2.60 10.04 22.33 0.22 -2.38 16 19 C 0.11 2.74 7.28 22.30 0.16 2.90 16 20 F -0.15 -4.03 17.26 44.97 0.78 -3.25 16 21 C -0.22 -6.33 8.85 22.55 0.20 -6.13 16 22 C 0.15 3.93 6.59 38.27 0.25 4.18 16 23 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 24 H 0.11 4.41 6.91 -2.40 -0.02 4.39 16 25 H 0.11 4.41 6.91 -2.40 -0.02 4.39 16 26 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.12 0.79 8.14 -2.38 -0.02 0.78 16 30 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 31 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.13 4.26 4.21 -2.91 -0.01 4.25 16 Total: -1.00 -77.87 293.85 4.91 -72.96 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.16 Total: 7.57 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 3.84 Total: -15.04 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -1.68 Total: -74.57 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.05 Total: -25.22 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.78 Total: -3.25 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: -7.76 SS G_CDS: -1.16 Total: -8.93 kcal Total: -77.87 4.91 -72.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058745976.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.451 kcal (2) G-P(sol) polarization free energy of solvation -77.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds