Wall clock time and date at job start Tue Mar 31 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86796 * 119.99876 * 2 1 4 4 H 1.48502 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47293 * 299.99972 * 3 2 1 6 6 H 1.48500 * 109.47199 * 60.00101 * 3 2 1 7 7 C 1.37875 * 119.99694 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99398 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00322 * 0.02562 * 7 2 1 10 10 O 1.42094 * 106.40380 * 66.45553 * 9 7 2 11 11 O 1.42099 * 106.39791 * 293.53713 * 9 7 2 12 12 N 1.65604 * 107.21785 * 179.97438 * 9 7 2 13 13 C 1.45286 * 121.35590 * 89.99884 * 12 9 7 14 14 C 1.53875 * 108.22832 * 212.03686 * 13 12 9 15 15 C 1.52560 * 108.90871 * 60.79415 * 14 13 12 16 16 C 1.51049 * 112.74456 * 272.73375 * 15 14 13 17 17 C 1.39494 * 115.79319 * 209.02489 * 16 15 14 18 18 C 1.37698 * 120.95406 * 183.86108 * 17 16 15 19 19 C 1.38270 * 119.94412 * 359.77881 * 18 17 16 20 20 C 1.37953 * 119.40522 * 359.57051 * 19 18 17 21 21 C 1.37458 * 125.44724 * 31.22554 * 16 15 14 22 22 C 1.46510 * 121.35393 * 270.01888 * 12 9 7 23 23 H 0.96995 * 119.99303 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.71526 * 92.34980 * 13 12 9 25 25 H 1.09005 * 109.74923 * 331.74089 * 13 12 9 26 26 H 1.09001 * 109.56511 * 300.96294 * 14 13 12 27 27 H 1.09004 * 109.56659 * 180.62612 * 14 13 12 28 28 H 1.09000 * 108.83321 * 151.89099 * 15 14 13 29 29 H 1.09003 * 108.74503 * 33.51412 * 15 14 13 30 30 H 1.07995 * 119.52359 * 3.83987 * 17 16 15 31 31 H 1.07999 * 120.02663 * 180.02562 * 18 17 16 32 32 H 1.07997 * 120.30150 * 179.33600 * 19 18 17 33 33 H 1.08002 * 119.72437 * 179.75960 * 20 19 18 34 34 H 1.08997 * 109.25487 * 328.45562 * 22 12 9 35 35 H 1.09003 * 109.25443 * 209.02350 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1236 -2.7200 -0.0019 10 8 0.4519 -2.7944 -1.2518 11 8 0.4511 -2.7961 1.2476 12 7 2.2484 -3.9354 -0.0030 13 6 2.7619 -4.4914 1.2372 14 6 4.2196 -4.9249 1.0031 15 6 5.0418 -3.7019 0.6085 16 6 5.0158 -3.4356 -0.8781 17 6 6.1462 -2.8086 -1.4024 18 6 6.2029 -2.4445 -2.7291 19 6 5.1306 -2.7040 -3.5625 20 6 4.0148 -3.3359 -3.0538 21 6 3.9676 -3.7200 -1.7207 22 6 2.7665 -4.4935 -1.2546 23 1 -0.4849 0.8401 0.0004 24 1 2.1638 -5.3548 1.5286 25 1 2.7244 -3.7365 2.0226 26 1 4.2567 -5.6636 0.2024 27 1 4.6237 -5.3564 1.9189 28 1 6.0748 -3.8570 0.9200 29 1 4.6451 -2.8303 1.1290 30 1 6.9889 -2.6055 -0.7583 31 1 7.0858 -1.9601 -3.1193 32 1 5.1646 -2.4113 -4.6015 33 1 3.1727 -3.5377 -3.6992 34 1 1.9899 -4.4460 -2.0180 35 1 3.0489 -5.5341 -1.0945 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062946037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:16 Heat of formation + Delta-G solvation = -67.868727 kcal Electronic energy + Delta-G solvation = -20968.983267 eV Core-core repulsion = 17864.885641 eV Total energy + Delta-G solvation = -3104.097626 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.62944 -36.60321 -35.26114 -33.93558 -33.18552 -32.88461 -31.22978 -29.80062 -26.10268 -25.68608 -25.27195 -21.97118 -20.83900 -20.17895 -18.57117 -17.38597 -16.34951 -16.10104 -15.48706 -15.12226 -15.02036 -14.54086 -14.10052 -13.76720 -13.47481 -13.17770 -12.87594 -12.64379 -12.22485 -12.06851 -11.94148 -11.45726 -11.21445 -11.20538 -11.13184 -10.94905 -10.55810 -10.50026 -10.37561 -10.25535 -10.17401 -10.08154 -9.21336 -8.89089 -8.42490 -8.27207 -8.11450 -6.65286 -5.25025 1.69194 1.72905 2.31696 3.07484 3.15775 3.24207 4.04960 4.12030 4.64078 4.68580 4.95987 5.06827 5.20440 5.26362 5.31589 5.38332 5.60027 5.64825 5.75952 5.79890 5.93074 5.95506 6.03961 6.11352 6.18550 6.27996 6.32596 6.38954 6.45870 6.54681 6.79425 6.82862 6.85556 7.09523 7.36229 7.38587 7.61340 8.06648 8.95229 10.28445 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015228 B = 0.009530 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.240061 B = 2937.348214 C = 3721.070758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.135 3.865 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.272 1.272 7 C -1.010 5.010 8 H 0.102 0.898 9 S 2.715 3.285 10 O -1.003 7.003 11 O -1.004 7.004 12 N -1.006 6.006 13 C 0.126 3.874 14 C -0.130 4.130 15 C -0.079 4.079 16 C -0.055 4.055 17 C -0.132 4.132 18 C -0.123 4.123 19 C -0.129 4.129 20 C -0.102 4.102 21 C -0.089 4.089 22 C 0.160 3.840 23 H 0.289 0.711 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.809 -7.304 -2.043 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.083 4.083 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.197 1.197 7 C -1.144 5.144 8 H 0.121 0.879 9 S 2.817 3.183 10 O -0.994 6.994 11 O -0.995 6.995 12 N -0.839 5.839 13 C 0.000 4.000 14 C -0.169 4.169 15 C -0.116 4.116 16 C -0.055 4.055 17 C -0.150 4.150 18 C -0.141 4.141 19 C -0.147 4.147 20 C -0.121 4.121 21 C -0.091 4.091 22 C 0.034 3.966 23 H 0.099 0.901 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.110 0.890 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.661 -7.389 -2.015 13.127 hybrid contribution 1.095 1.468 -0.078 1.833 sum 11.756 -5.921 -2.092 13.328 Atomic orbital electron populations 1.69911 1.06739 1.30470 1.40724 1.24716 0.94374 1.00655 0.88527 0.86200 0.80644 0.80693 0.78477 1.18583 1.19668 1.19689 1.30587 1.06130 1.11542 1.66108 0.87937 1.00504 0.72019 0.73041 0.72759 1.93336 1.72830 1.87513 1.45675 1.93358 1.72718 1.87601 1.45778 1.57937 1.61434 1.55140 1.09396 1.21183 0.93247 0.98768 0.86824 1.22042 0.95371 0.97855 1.01582 1.20513 0.99931 0.99296 0.91813 1.19763 0.92946 0.97648 0.95186 1.21274 0.98101 1.00092 0.95560 1.20919 0.98612 1.00529 0.94055 1.21008 0.94084 1.00063 0.99587 1.21188 0.97945 0.98061 0.94897 1.19967 0.95742 0.99785 0.93618 1.19975 0.93470 0.96271 0.86903 0.90065 0.92681 0.90204 0.91093 0.90881 0.91514 0.89863 0.86815 0.86754 0.86361 0.85766 0.89008 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.26 13.19 55.43 0.73 -24.53 16 2 C 0.13 3.81 5.46 -17.82 -0.10 3.71 16 3 Si 0.92 21.12 29.54 -169.99 -5.02 16.09 16 4 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -1.01 -28.11 9.75 30.60 0.30 -27.81 16 8 H 0.10 2.69 7.81 -52.49 -0.41 2.28 16 9 S 2.72 72.99 4.99 -107.50 -0.54 72.46 16 10 O -1.00 -29.39 16.77 -57.17 -0.96 -30.35 16 11 O -1.00 -29.58 17.18 -57.17 -0.98 -30.56 16 12 N -1.01 -20.42 2.89 -116.27 -0.34 -20.76 16 13 C 0.13 2.12 5.81 -4.24 -0.02 2.09 16 14 C -0.13 -1.70 5.63 -26.50 -0.15 -1.85 16 15 C -0.08 -1.13 5.30 -27.94 -0.15 -1.28 16 16 C -0.06 -0.89 5.63 -104.27 -0.59 -1.48 16 17 C -0.13 -1.95 9.47 -39.31 -0.37 -2.33 16 18 C -0.12 -1.74 10.03 -39.77 -0.40 -2.14 16 19 C -0.13 -1.91 10.07 -39.67 -0.40 -2.30 16 20 C -0.10 -1.68 9.57 -39.47 -0.38 -2.06 16 21 C -0.09 -1.55 5.57 -104.90 -0.58 -2.13 16 22 C 0.16 2.79 5.26 -5.39 -0.03 2.77 16 23 H 0.29 7.74 8.31 -40.82 -0.34 7.40 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.08 1.41 7.75 -51.93 -0.40 1.01 16 26 H 0.07 0.87 6.01 -51.93 -0.31 0.56 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 29 H 0.08 1.35 7.78 -51.93 -0.40 0.94 16 30 H 0.11 1.41 7.91 -52.49 -0.42 1.00 16 31 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.12 1.89 7.84 -52.49 -0.41 1.48 16 34 H 0.09 1.67 6.78 -51.93 -0.35 1.32 16 35 H 0.08 1.16 6.40 -51.93 -0.33 0.83 16 LS Contribution 300.28 15.07 4.53 4.53 Total: -1.00 -35.09 300.28 -9.72 -44.81 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.27 Total: 3.10 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: -2.87 Total: -34.80 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.40 Total: -45.29 kcal Atomic # 8 Polarization: -58.96 SS G_CDS: -1.94 Total: -60.90 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 72.99 SS G_CDS: -0.54 Total: 72.46 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.09 -9.72 -44.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062946037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.055 kcal (2) G-P(sol) polarization free energy of solvation -35.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds