Wall clock time and date at job start Tue Mar 31 2020 05:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86796 * 119.99876 * 2 1 4 4 H 1.48502 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47293 * 299.99972 * 3 2 1 6 6 H 1.48500 * 109.47199 * 60.00101 * 3 2 1 7 7 C 1.37875 * 119.99694 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99398 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00322 * 0.02562 * 7 2 1 10 10 O 1.42094 * 106.40380 * 66.45553 * 9 7 2 11 11 O 1.42099 * 106.39791 * 293.53713 * 9 7 2 12 12 N 1.65604 * 107.21785 * 179.97438 * 9 7 2 13 13 C 1.45286 * 121.35590 * 89.99884 * 12 9 7 14 14 C 1.53875 * 108.22832 * 212.03686 * 13 12 9 15 15 C 1.52560 * 108.90871 * 60.79415 * 14 13 12 16 16 C 1.51049 * 112.74456 * 272.73375 * 15 14 13 17 17 C 1.39494 * 115.79319 * 209.02489 * 16 15 14 18 18 C 1.37698 * 120.95406 * 183.86108 * 17 16 15 19 19 C 1.38270 * 119.94412 * 359.77881 * 18 17 16 20 20 C 1.37953 * 119.40522 * 359.57051 * 19 18 17 21 21 C 1.37458 * 125.44724 * 31.22554 * 16 15 14 22 22 C 1.46510 * 121.35393 * 270.01888 * 12 9 7 23 23 H 0.96995 * 119.99303 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.71526 * 92.34980 * 13 12 9 25 25 H 1.09005 * 109.74923 * 331.74089 * 13 12 9 26 26 H 1.09001 * 109.56511 * 300.96294 * 14 13 12 27 27 H 1.09004 * 109.56659 * 180.62612 * 14 13 12 28 28 H 1.09000 * 108.83321 * 151.89099 * 15 14 13 29 29 H 1.09003 * 108.74503 * 33.51412 * 15 14 13 30 30 H 1.07995 * 119.52359 * 3.83987 * 17 16 15 31 31 H 1.07999 * 120.02663 * 180.02562 * 18 17 16 32 32 H 1.07997 * 120.30150 * 179.33600 * 19 18 17 33 33 H 1.08002 * 119.72437 * 179.75960 * 20 19 18 34 34 H 1.08997 * 109.25487 * 328.45562 * 22 12 9 35 35 H 1.09003 * 109.25443 * 209.02350 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1236 -2.7200 -0.0019 10 8 0.4519 -2.7944 -1.2518 11 8 0.4511 -2.7961 1.2476 12 7 2.2484 -3.9354 -0.0030 13 6 2.7619 -4.4914 1.2372 14 6 4.2196 -4.9249 1.0031 15 6 5.0418 -3.7019 0.6085 16 6 5.0158 -3.4356 -0.8781 17 6 6.1462 -2.8086 -1.4024 18 6 6.2029 -2.4445 -2.7291 19 6 5.1306 -2.7040 -3.5625 20 6 4.0148 -3.3359 -3.0538 21 6 3.9676 -3.7200 -1.7207 22 6 2.7665 -4.4935 -1.2546 23 1 -0.4849 0.8401 0.0004 24 1 2.1638 -5.3548 1.5286 25 1 2.7244 -3.7365 2.0226 26 1 4.2567 -5.6636 0.2024 27 1 4.6237 -5.3564 1.9189 28 1 6.0748 -3.8570 0.9200 29 1 4.6451 -2.8303 1.1290 30 1 6.9889 -2.6055 -0.7583 31 1 7.0858 -1.9601 -3.1193 32 1 5.1646 -2.4113 -4.6015 33 1 3.1727 -3.5377 -3.6992 34 1 1.9899 -4.4460 -2.0180 35 1 3.0489 -5.5341 -1.0945 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062946037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:15 Heat of formation + Delta-G solvation = -92.409036 kcal Electronic energy + Delta-G solvation = -20970.047415 eV Core-core repulsion = 17864.885641 eV Total energy + Delta-G solvation = -3105.161773 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.82903 -37.91206 -37.45013 -36.15438 -35.19795 -34.25041 -32.47137 -30.99785 -28.26181 -26.99100 -26.54458 -23.14069 -22.23147 -21.33089 -20.56727 -19.17659 -18.31108 -17.34178 -17.14975 -16.81187 -16.43374 -15.85148 -15.81230 -15.45814 -15.04360 -14.45334 -14.18918 -14.00057 -13.83286 -13.54245 -13.28015 -13.18032 -13.05674 -12.80711 -12.60641 -12.52125 -12.33690 -12.26967 -12.23840 -11.68051 -11.58334 -11.48132 -11.27739 -10.95177 -9.82980 -9.58988 -9.35776 -8.74808 -7.45636 0.25642 0.56630 0.59032 1.28130 1.29252 1.46660 2.18049 2.56840 2.79135 3.02695 3.73678 3.83223 3.95807 3.98836 4.03478 4.15781 4.29057 4.34103 4.48073 4.54047 4.62155 4.65189 4.79247 4.88911 4.93114 4.96881 5.11468 5.15318 5.23785 5.26328 5.40744 5.49690 5.67763 5.68979 5.85836 5.94314 6.01368 6.23910 6.79279 8.20736 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015228 B = 0.009530 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.240061 B = 2937.348214 C = 3721.070758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.983 3.017 4 H -0.250 1.250 5 H -0.260 1.260 6 H -0.257 1.257 7 C -1.024 5.024 8 H 0.111 0.889 9 S 2.718 3.282 10 O -1.040 7.040 11 O -1.042 7.042 12 N -1.000 6.000 13 C 0.112 3.888 14 C -0.118 4.118 15 C -0.081 4.081 16 C -0.071 4.071 17 C -0.138 4.138 18 C -0.124 4.124 19 C -0.135 4.135 20 C -0.127 4.127 21 C -0.114 4.114 22 C 0.156 3.844 23 H 0.298 0.702 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.033 -7.163 -1.947 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.801 3.199 4 H -0.173 1.173 5 H -0.184 1.184 6 H -0.181 1.181 7 C -1.157 5.157 8 H 0.130 0.870 9 S 2.821 3.179 10 O -1.031 7.031 11 O -1.032 7.032 12 N -0.837 5.837 13 C -0.013 4.013 14 C -0.156 4.156 15 C -0.118 4.118 16 C -0.071 4.071 17 C -0.156 4.156 18 C -0.142 4.142 19 C -0.152 4.152 20 C -0.146 4.146 21 C -0.116 4.116 22 C 0.031 3.969 23 H 0.108 0.892 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.127 0.873 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.158 0.842 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.875 -7.266 -1.917 15.779 hybrid contribution 0.135 1.334 -0.134 1.347 sum 14.010 -5.932 -2.051 15.352 Atomic orbital electron populations 1.69998 1.08651 1.32074 1.42065 1.25925 0.95269 1.05063 0.87665 0.85207 0.79547 0.75672 0.79450 1.17342 1.18442 1.18094 1.30856 1.06611 1.12424 1.65835 0.87033 0.99990 0.72673 0.73851 0.71388 1.93275 1.74653 1.88290 1.46856 1.93295 1.74543 1.88400 1.46982 1.57375 1.60711 1.53782 1.11850 1.21546 0.96295 0.98650 0.84830 1.22018 0.92180 0.97653 1.03745 1.20592 1.01963 0.98775 0.90499 1.20062 0.93094 0.97928 0.96040 1.21647 0.98362 0.99253 0.96308 1.21339 0.99284 0.99698 0.93865 1.21338 0.93632 0.99297 1.00971 1.21385 0.98910 0.99237 0.95081 1.20032 0.96046 1.01102 0.94371 1.20199 0.93325 0.98307 0.85079 0.89233 0.91114 0.91828 0.89840 0.87278 0.88215 0.92208 0.84224 0.83698 0.84126 0.86095 0.90844 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.71 13.19 21.45 0.28 -54.43 16 2 C 0.07 4.18 5.46 84.65 0.46 4.64 16 3 Si 0.98 42.76 29.54 68.60 2.03 44.78 16 4 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -1.02 -57.96 9.75 67.73 0.66 -57.30 16 8 H 0.11 5.90 7.81 -2.91 -0.02 5.88 16 9 S 2.72 151.19 4.99 -56.49 -0.28 150.90 16 10 O -1.04 -63.76 16.77 -128.00 -2.15 -65.91 16 11 O -1.04 -63.84 17.18 -128.00 -2.20 -66.04 16 12 N -1.00 -40.97 2.89 -521.77 -1.51 -42.47 16 13 C 0.11 3.67 5.81 86.90 0.50 4.17 16 14 C -0.12 -2.73 5.63 30.74 0.17 -2.56 16 15 C -0.08 -2.12 5.30 29.81 0.16 -1.96 16 16 C -0.07 -2.14 5.63 -19.64 -0.11 -2.25 16 17 C -0.14 -3.64 9.47 22.44 0.21 -3.43 16 18 C -0.12 -3.12 10.03 22.15 0.22 -2.90 16 19 C -0.13 -3.71 10.07 22.21 0.22 -3.49 16 20 C -0.13 -4.16 9.57 22.34 0.21 -3.94 16 21 C -0.11 -3.86 5.57 -20.05 -0.11 -3.97 16 22 C 0.16 5.43 5.26 85.50 0.45 5.88 16 23 H 0.30 16.29 8.31 -92.71 -0.77 15.52 16 24 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.06 2.27 7.75 -2.38 -0.02 2.25 16 26 H 0.08 1.76 6.01 -2.39 -0.01 1.75 16 27 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.10 1.91 7.87 -2.39 -0.02 1.89 16 29 H 0.06 1.85 7.78 -2.39 -0.02 1.84 16 30 H 0.14 2.88 7.91 -2.91 -0.02 2.85 16 31 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.12 3.83 7.84 -2.91 -0.02 3.80 16 34 H 0.07 2.79 6.78 -2.39 -0.02 2.77 16 35 H 0.12 3.18 6.40 -2.39 -0.02 3.17 16 Total: -1.00 -78.65 300.28 0.33 -78.32 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 1.09 Total: 21.95 kcal Atomic # 6 Polarization: -70.16 SS G_CDS: 3.06 Total: -67.10 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -1.22 Total: -96.90 kcal Atomic # 8 Polarization: -127.61 SS G_CDS: -4.34 Total: -131.95 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 151.19 SS G_CDS: -0.28 Total: 150.90 kcal Total: -78.65 0.33 -78.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062946037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.089 kcal (2) G-P(sol) polarization free energy of solvation -78.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds