Wall clock time and date at job start Tue Mar 31 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99613 * 2 1 4 4 H 1.48504 * 109.47101 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47347 * 299.99961 * 3 2 1 6 6 H 1.48502 * 109.47487 * 60.00230 * 3 2 1 7 7 C 1.37869 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99692 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00218 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47267 * 180.02562 * 9 7 2 11 11 C 1.39678 * 119.99779 * 275.00275 * 10 9 7 12 12 C 1.38909 * 120.07228 * 154.72280 * 11 10 9 13 13 C 1.38111 * 119.92233 * 179.76766 * 12 11 10 14 14 C 1.38282 * 120.07428 * 0.50791 * 13 12 11 15 15 C 1.38289 * 120.15219 * 359.74516 * 14 13 12 16 16 C 1.38110 * 120.07451 * 359.97438 * 15 14 13 17 17 S 1.65600 * 120.00197 * 95.00154 * 10 9 7 18 18 O 1.42103 * 104.27650 * 153.92906 * 17 10 9 19 19 O 1.42099 * 104.27644 * 26.07216 * 17 10 9 20 20 C 1.81400 * 104.44674 * 270.00027 * 17 10 9 21 21 C 1.53000 * 117.49538 * 111.37994 * 20 17 10 22 22 C 1.52997 * 60.00347 * 107.48756 * 21 20 17 23 23 H 0.97004 * 120.00206 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47259 * 60.00297 * 9 7 2 25 25 H 1.09003 * 109.47621 * 300.00421 * 9 7 2 26 26 H 1.07995 * 120.04221 * 359.97438 * 12 11 10 27 27 H 1.07996 * 119.96250 * 180.25339 * 13 12 11 28 28 H 1.08001 * 119.92421 * 179.72283 * 14 13 12 29 29 H 1.08003 * 119.96682 * 179.97438 * 15 14 13 30 30 H 1.07998 * 120.04202 * 179.97438 * 16 15 14 31 31 H 1.08990 * 115.56405 * 325.69029 * 20 17 10 32 32 H 1.09002 * 117.49696 * 214.97969 * 21 20 17 33 33 H 1.09002 * 117.50343 * 359.97438 * 21 20 17 34 34 H 1.08999 * 117.49685 * 252.51237 * 22 21 20 35 35 H 1.08997 * 117.50044 * 107.48590 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7371 -4.0748 -1.2056 12 6 3.9676 -4.7192 -1.2200 13 6 4.4905 -5.1793 -2.4126 14 6 3.7954 -4.9898 -3.5929 15 6 2.5726 -4.3440 -3.5829 16 6 2.0412 -3.8865 -2.3931 17 16 2.6462 -4.3232 1.4281 18 8 3.0188 -5.6446 1.0615 19 8 1.5445 -4.0862 2.2938 20 6 4.0973 -3.3803 1.9717 21 6 3.9441 -2.5025 3.2155 22 6 4.7577 -3.7962 3.2878 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 4.5132 -4.8633 -0.2992 27 1 5.4452 -5.6840 -2.4240 28 1 4.2086 -5.3466 -4.5248 29 1 2.0324 -4.1972 -4.5066 30 1 1.0864 -3.3819 -2.3859 31 1 4.7468 -3.0162 1.1757 32 1 4.4928 -1.5609 3.2377 33 1 2.9712 -2.4913 3.7069 34 1 4.3201 -4.6364 3.8268 35 1 5.8417 -3.7058 3.3575 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070976031.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:35 Heat of formation + Delta-G solvation = -10.236471 kcal Electronic energy + Delta-G solvation = -20526.505282 eV Core-core repulsion = 17424.906779 eV Total energy + Delta-G solvation = -3101.598503 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.04945 -36.97322 -36.57162 -35.62347 -35.35763 -32.67935 -30.52730 -29.23061 -26.79148 -23.72046 -23.00244 -22.46007 -22.06780 -21.07283 -18.63347 -17.65715 -16.79757 -16.67572 -16.30788 -15.36255 -15.18888 -14.66227 -14.33549 -14.06252 -13.59928 -13.31162 -12.99773 -12.93470 -12.35811 -12.08053 -11.83924 -11.55958 -11.48500 -11.30933 -11.26106 -10.99096 -10.90298 -10.85069 -10.78467 -10.54120 -10.40083 -10.15870 -10.00147 -9.15932 -8.58023 -8.47924 -7.40041 -6.19502 -4.26930 0.69687 1.85477 1.92825 2.98650 3.19480 3.27994 3.30680 3.46955 4.12384 4.27852 4.37714 4.54306 4.73859 4.98364 5.05138 5.14556 5.22436 5.34110 5.45370 5.49298 5.73103 5.78499 5.82080 5.95093 6.04513 6.09613 6.30624 6.49839 6.74615 6.93601 7.01468 7.23317 7.23880 7.29587 7.69594 7.76296 7.99923 8.76437 9.39217 10.88252 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.009316 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.492349 B = 3004.744837 C = 4276.180122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.232 3.768 10 N -0.923 5.923 11 C 0.205 3.795 12 C -0.173 4.173 13 C -0.090 4.090 14 C -0.163 4.163 15 C -0.094 4.094 16 C -0.140 4.140 17 S 2.632 3.368 18 O -0.960 6.960 19 O -0.944 6.944 20 C -0.675 4.675 21 C -0.112 4.112 22 C -0.139 4.139 23 H 0.266 0.734 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.134 0.866 31 H 0.158 0.842 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.604 -6.643 0.091 10.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.112 3.888 10 N -0.747 5.747 11 C 0.107 3.893 12 C -0.195 4.195 13 C -0.108 4.108 14 C -0.183 4.183 15 C -0.113 4.113 16 C -0.163 4.163 17 S 2.726 3.274 18 O -0.950 6.950 19 O -0.935 6.935 20 C -0.783 4.783 21 C -0.149 4.149 22 C -0.178 4.178 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.137 0.863 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.151 0.849 31 H 0.176 0.824 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.120 0.880 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.942 -7.188 0.619 10.730 hybrid contribution 0.962 1.677 -0.332 1.962 sum 8.904 -5.511 0.287 10.475 Atomic orbital electron populations 1.69936 1.05982 1.27253 1.49341 1.24910 0.94842 0.99202 0.94684 0.86481 0.80034 0.83355 0.77833 1.19695 1.20774 1.20746 1.21459 0.93585 0.90321 1.52561 0.91844 1.19572 0.87437 0.81200 1.00599 1.55620 1.54544 1.46826 1.17726 1.17536 0.91413 0.93665 0.86668 1.20952 0.94834 1.04466 0.99209 1.20739 0.99302 0.98892 0.91914 1.20915 0.96468 1.03232 0.97668 1.20936 0.95658 0.97395 0.97268 1.21022 1.01133 1.02932 0.91170 1.04223 0.75556 0.74082 0.73566 1.93585 1.85119 1.34348 1.81969 1.93579 1.47903 1.86135 1.65872 1.32587 1.23477 1.20362 1.01876 1.22758 1.02913 0.95179 0.94096 1.22748 1.00923 0.99830 0.94254 0.92465 0.93268 0.91977 0.86296 0.86325 0.86705 0.86247 0.84871 0.82438 0.87111 0.86415 0.88038 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -14.01 9.36 -34.45 -0.32 -14.34 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.23 5.73 5.16 -5.19 -0.03 5.70 16 10 N -0.92 -19.89 2.91 -59.80 -0.17 -20.06 16 11 C 0.21 4.15 6.04 -83.78 -0.51 3.64 16 12 C -0.17 -3.12 8.42 -39.38 -0.33 -3.45 16 13 C -0.09 -1.39 10.04 -39.61 -0.40 -1.78 16 14 C -0.16 -2.40 10.04 -39.55 -0.40 -2.79 16 15 C -0.09 -1.49 10.04 -39.61 -0.40 -1.89 16 16 C -0.14 -2.68 9.36 -39.38 -0.37 -3.04 16 17 S 2.63 51.96 5.15 -107.50 -0.55 51.41 16 18 O -0.96 -19.64 15.19 -57.54 -0.87 -20.51 16 19 O -0.94 -21.07 15.82 -57.54 -0.91 -21.98 16 20 C -0.68 -10.85 6.14 -26.73 -0.16 -11.02 16 21 C -0.11 -1.64 10.17 -26.73 -0.27 -1.91 16 22 C -0.14 -1.74 10.30 -26.73 -0.28 -2.02 16 23 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 24 H 0.05 1.24 6.04 -51.93 -0.31 0.93 16 25 H 0.06 1.65 6.81 -51.93 -0.35 1.30 16 26 H 0.12 2.02 5.76 -52.49 -0.30 1.71 16 27 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 28 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 30 H 0.13 2.60 6.20 -52.49 -0.33 2.28 16 31 H 0.16 2.42 8.08 -51.93 -0.42 2.00 16 32 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.12 1.80 7.66 -51.93 -0.40 1.40 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -31.10 309.01 -9.89 -40.99 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.19 Total: 5.28 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: -3.56 Total: -31.21 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.56 Total: -44.09 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -1.78 Total: -42.49 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 51.96 SS G_CDS: -0.55 Total: 51.41 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.10 -9.89 -40.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070976031.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.757 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds