Wall clock time and date at job start Tue Mar 31 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86796 * 120.00288 * 2 1 4 4 H 1.48505 * 109.47018 * 270.00149 * 3 2 1 5 5 H 1.48501 * 109.47109 * 30.00095 * 3 2 1 6 6 H 1.48504 * 109.47395 * 150.00389 * 3 2 1 7 7 C 1.38805 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99910 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99822 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00018 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47173 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00390 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00142 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00353 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47388 * 180.02562 * 14 13 11 16 16 C 1.38264 * 119.99747 * 270.02243 * 15 14 13 17 17 C 1.38205 * 119.99484 * 179.97438 * 16 15 14 18 18 C 1.38262 * 120.00498 * 359.81306 * 17 16 15 19 19 C 1.38217 * 119.99351 * 0.42077 * 18 17 16 20 20 C 1.50699 * 119.99610 * 179.81235 * 19 18 17 21 21 O 1.42903 * 109.47152 * 269.72650 * 20 19 18 22 22 C 1.38205 * 119.99984 * 90.00225 * 15 14 13 23 23 H 0.97005 * 119.99995 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47406 * 60.00082 * 10 9 7 25 25 H 1.09000 * 109.47229 * 299.99833 * 10 9 7 26 26 H 0.96998 * 119.99923 * 359.97438 * 13 11 10 27 27 H 1.09003 * 109.46759 * 59.99681 * 14 13 11 28 28 H 1.09004 * 109.47264 * 300.00278 * 14 13 11 29 29 H 1.07992 * 119.99832 * 359.97438 * 16 15 14 30 30 H 1.08001 * 119.99707 * 180.02562 * 17 16 15 31 31 H 1.07994 * 120.00185 * 180.22639 * 18 17 16 32 32 H 1.08997 * 109.47198 * 149.72328 * 20 19 18 33 33 H 1.09008 * 109.47393 * 29.72044 * 20 19 18 34 34 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 35 35 H 1.08005 * 120.00366 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5480 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3027 -0.0012 12 8 0.7908 -5.5023 -0.0011 13 7 2.8439 -6.3432 -0.0008 14 6 2.3301 -7.7152 -0.0008 15 6 3.4845 -8.6839 0.0003 16 6 4.0152 -9.1282 -1.1966 17 6 5.0743 -10.0162 -1.1954 18 6 5.6055 -10.4573 0.0024 19 6 5.0717 -10.0168 1.1989 20 6 5.6479 -10.5008 2.5045 21 8 4.9637 -11.6856 2.9170 22 6 4.0129 -9.1278 1.1978 23 1 -0.4850 0.8401 0.0004 24 1 3.1243 -3.7315 0.8895 25 1 3.1243 -3.7315 -0.8905 26 1 3.8006 -6.1836 -0.0004 27 1 1.7218 -7.8752 -0.8910 28 1 1.7211 -7.8751 0.8890 29 1 3.6023 -8.7813 -2.1322 30 1 5.4891 -10.3630 -2.1304 31 1 6.4353 -11.1483 0.0032 32 1 5.5267 -9.7282 3.2638 33 1 6.7078 -10.7198 2.3750 34 1 5.2829 -12.0535 3.7524 35 1 3.5987 -8.7802 2.1327 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071353889.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:13 Heat of formation + Delta-G solvation = -68.638067 kcal Electronic energy + Delta-G solvation = -18167.017602 eV Core-core repulsion = 15062.886615 eV Total energy + Delta-G solvation = -3104.130987 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.02653 -38.91124 -37.04171 -34.76700 -32.42325 -32.05422 -31.56822 -29.26135 -26.37425 -25.90054 -25.35129 -22.37352 -20.94616 -20.37390 -17.90236 -17.83765 -16.94287 -16.29160 -16.13474 -15.89691 -15.14132 -15.02366 -14.79846 -14.23120 -13.97846 -13.92033 -13.31245 -13.08833 -12.91651 -12.83883 -12.57954 -12.38914 -11.76043 -11.34345 -11.21640 -11.05825 -11.01851 -10.76010 -10.48420 -9.81556 -9.58195 -9.16722 -9.06504 -8.98119 -8.88456 -8.22723 -6.49271 -6.21069 -3.91541 0.92366 1.05553 3.02906 3.10781 3.22766 3.25736 3.30222 3.42618 3.84852 4.09207 4.21026 4.38068 4.55170 4.63673 4.81034 4.87876 4.98876 5.13963 5.14798 5.16963 5.21621 5.43367 5.54187 5.68777 5.76884 5.83799 5.90287 6.13473 6.15168 6.22942 6.32858 6.58640 6.66869 7.19445 7.60170 7.72211 8.35855 8.61760 9.24190 10.86378 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031575 B = 0.002749 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.572011 B =10184.298269 C =10327.441608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.517 6.517 13 N -0.735 5.735 14 C 0.162 3.838 15 C -0.105 4.105 16 C -0.094 4.094 17 C -0.125 4.125 18 C -0.095 4.095 19 C -0.098 4.098 20 C 0.117 3.883 21 O -0.568 6.568 22 C -0.080 4.080 23 H 0.268 0.732 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.399 0.601 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.380 0.620 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.399 -21.554 2.175 26.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.390 5.390 14 C 0.038 3.962 15 C -0.105 4.105 16 C -0.112 4.112 17 C -0.143 4.143 18 C -0.113 4.113 19 C -0.098 4.098 20 C 0.040 3.960 21 O -0.374 6.374 22 C -0.098 4.098 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.233 0.767 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.227 0.773 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.878 -21.661 1.626 24.758 hybrid contribution 2.810 1.220 0.480 3.101 sum 14.688 -20.441 2.106 25.259 Atomic orbital electron populations 1.70022 1.05954 1.27447 1.46878 1.24999 0.95035 0.99043 0.94556 0.86161 0.79394 0.81547 0.78338 1.20278 1.20758 1.19704 1.22870 0.94908 0.91658 1.58917 0.90932 1.85401 1.04939 0.96309 1.96716 1.23529 1.06561 0.95297 1.04954 1.20339 0.86511 0.86239 0.75151 1.90708 1.15342 1.85561 1.47535 1.46073 1.10046 1.04909 1.77943 1.20127 0.93044 0.79726 1.03261 1.19940 0.98103 0.99126 0.93339 1.21199 0.95766 0.96423 0.97820 1.21150 0.96951 0.98127 0.98052 1.21074 0.99649 0.98680 0.91936 1.19594 0.97569 0.98399 0.94265 1.20981 0.94622 0.87229 0.93216 1.86575 1.63495 1.42896 1.44400 1.21018 0.94708 0.96146 0.97947 0.92185 0.89209 0.89204 0.76749 0.90629 0.90701 0.85501 0.85642 0.86001 0.92547 0.92728 0.77256 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.31 9.50 30.94 0.29 -15.01 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 11 C 0.53 10.03 7.85 -10.99 -0.09 9.94 16 12 O -0.52 -11.87 15.86 5.55 0.09 -11.78 16 13 N -0.73 -10.12 5.55 -61.47 -0.34 -10.46 16 14 C 0.16 2.01 5.80 -5.20 -0.03 1.98 16 15 C -0.10 -1.09 5.25 -104.63 -0.55 -1.64 16 16 C -0.09 -0.88 9.70 -39.58 -0.38 -1.27 16 17 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 18 C -0.10 -0.81 9.70 -39.58 -0.38 -1.20 16 19 C -0.10 -0.91 5.51 -104.62 -0.58 -1.49 16 20 C 0.12 0.84 7.17 36.01 0.26 1.10 16 21 O -0.57 -4.56 13.64 -35.23 -0.48 -5.04 16 22 C -0.08 -0.80 9.36 -39.59 -0.37 -1.17 16 23 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 25 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 26 H 0.40 4.49 8.46 -40.82 -0.35 4.15 16 27 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 28 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 31 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 33 H 0.05 0.29 8.08 -51.92 -0.42 -0.13 16 34 H 0.38 1.17 9.12 45.56 0.42 1.59 16 35 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 LS Contribution 325.81 15.07 4.91 4.91 Total: -1.00 -36.02 325.81 -8.12 -44.13 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -3.69 Total: 2.31 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -2.10 Total: -11.10 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.39 Total: -36.00 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.39 Total: -16.82 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.02 -8.12 -44.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071353889.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.506 kcal (2) G-P(sol) polarization free energy of solvation -36.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds