Wall clock time and date at job start Tue Mar 31 2020 05:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86796 * 119.99891 * 2 1 4 4 H 1.48507 * 109.46947 * 274.87547 * 3 2 1 5 5 H 1.48499 * 109.47435 * 34.88058 * 3 2 1 6 6 H 1.48505 * 109.47007 * 154.88222 * 3 2 1 7 7 C 1.39872 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99663 * 161.53178 * 7 2 1 9 9 C 1.41134 * 119.99921 * 341.52993 * 7 2 1 10 10 C 1.40891 * 120.15188 * 155.52326 * 9 7 2 11 11 C 1.36342 * 119.83483 * 180.02562 * 10 9 7 12 12 C 1.39564 * 120.15968 * 359.97438 * 11 10 9 13 13 N 1.38862 * 119.83992 * 179.97438 * 12 11 10 14 14 S 1.65599 * 120.00185 * 105.08436 * 13 12 11 15 15 O 1.42096 * 104.27604 * 180.78184 * 14 13 12 16 16 O 1.42108 * 104.27358 * 52.92698 * 14 13 12 17 17 C 1.81400 * 104.44998 * 296.85882 * 14 13 12 18 18 C 1.53004 * 109.47014 * 182.21871 * 17 14 13 19 19 C 1.53000 * 117.51727 * 116.28205 * 18 17 14 20 20 C 1.52992 * 117.49912 * 184.91236 * 18 17 14 21 21 C 1.39562 * 120.31939 * 0.25263 * 12 11 10 22 22 C 1.36340 * 120.15907 * 359.48779 * 21 12 11 23 23 H 0.97002 * 120.00075 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.07952 * 0.02562 * 10 9 7 25 25 H 1.08000 * 119.91719 * 179.97438 * 11 10 9 26 26 H 0.97004 * 120.00047 * 285.08894 * 13 12 11 27 27 H 1.08995 * 109.46945 * 62.21946 * 17 14 13 28 28 H 1.08994 * 109.46869 * 302.21718 * 17 14 13 29 29 H 1.09004 * 115.55103 * 330.58637 * 18 17 14 30 30 H 1.08998 * 117.50001 * 214.97493 * 19 18 17 31 31 H 1.08998 * 117.49944 * 359.97438 * 19 18 17 32 32 H 1.08997 * 117.49915 * 359.97393 * 20 18 17 33 33 H 1.08998 * 117.50137 * 145.00533 * 20 18 17 34 34 H 1.07995 * 119.92095 * 179.72203 * 21 12 11 35 35 H 1.08002 * 120.08450 * 180.23013 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3874 2.1059 -1.3951 5 1 1.4959 2.6207 0.8006 6 1 3.5884 1.4126 0.5943 7 6 2.0084 -1.2114 0.0005 8 1 3.0466 -1.2355 -0.2957 9 6 1.3572 -2.4019 0.3883 10 6 1.8276 -3.6479 -0.0714 11 6 1.1933 -4.7939 0.3068 12 6 0.0809 -4.7349 1.1476 13 7 -0.5604 -5.9063 1.5282 14 16 -0.3572 -6.5014 3.0602 15 8 -1.1313 -7.6929 3.0788 16 8 -0.6778 -5.4061 3.9069 17 6 1.4117 -6.8897 3.1640 18 6 1.7192 -7.5059 4.5303 19 6 2.2231 -8.9503 4.5570 20 6 3.1843 -7.7990 4.8594 21 6 -0.3936 -3.5040 1.6030 22 6 0.2340 -2.3502 1.2372 23 1 -0.4850 0.8401 -0.0004 24 1 2.6886 -3.6950 -0.7217 25 1 1.5525 -5.7497 -0.0451 26 1 -1.1275 -6.3760 0.8967 27 1 1.9922 -5.9758 3.0386 28 1 1.6748 -7.5980 2.3784 29 1 1.0747 -7.1826 5.3477 30 1 1.9101 -9.5772 5.3920 31 1 2.3352 -9.4621 3.6012 32 1 3.9291 -7.5533 4.1025 33 1 3.5037 -7.6686 5.8933 34 1 -1.2576 -3.4655 2.2498 35 1 -0.1319 -1.3985 1.5933 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078723115.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:37 Heat of formation + Delta-G solvation = -34.939189 kcal Electronic energy + Delta-G solvation = -19529.339194 eV Core-core repulsion = 16426.669500 eV Total energy + Delta-G solvation = -3102.669694 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.03164 -37.59853 -36.60566 -35.51369 -34.79702 -32.86476 -29.65601 -29.13704 -28.79674 -24.79043 -22.53462 -21.30212 -21.05277 -20.82827 -18.88216 -17.48570 -17.23678 -16.96255 -16.28259 -15.36407 -15.29136 -14.65056 -14.35555 -14.04830 -13.72379 -13.21950 -12.88104 -12.30051 -12.16947 -11.91437 -11.86532 -11.71103 -11.65445 -11.55079 -11.28945 -11.20642 -11.14840 -11.00775 -10.70887 -10.34237 -10.14116 -9.97430 -9.73091 -9.28960 -8.89921 -7.69365 -7.43638 -6.95070 -4.51850 0.65568 2.55498 2.97482 2.98767 3.01728 3.07376 3.24258 3.57231 3.79943 4.07891 4.41160 4.48870 4.56867 4.81643 4.86261 5.01357 5.35557 5.49330 5.50010 5.58131 5.74770 5.96619 6.03538 6.07343 6.28962 6.37026 6.84933 6.89043 7.07543 7.14006 7.39228 7.46653 7.81735 7.90468 8.06809 8.11506 8.46944 8.69491 8.81108 9.97550 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.026419 B = 0.004406 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.594235 B = 6354.071884 C = 6786.624038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.448 4.448 8 H 0.082 0.918 9 C 0.119 3.881 10 C -0.226 4.226 11 C -0.077 4.077 12 C -0.042 4.042 13 N -1.034 6.034 14 S 2.602 3.398 15 O -0.979 6.979 16 O -0.953 6.953 17 C -0.597 4.597 18 C -0.150 4.150 19 C -0.174 4.174 20 C -0.165 4.165 21 C -0.071 4.071 22 C -0.168 4.168 23 H 0.285 0.715 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.405 0.595 27 H 0.140 0.860 28 H 0.127 0.873 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 -9.281 4.380 10.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.477 4.477 8 H 0.100 0.900 9 C 0.115 3.885 10 C -0.247 4.247 11 C -0.098 4.098 12 C -0.138 4.138 13 N -0.788 5.788 14 S 2.697 3.303 15 O -0.969 6.969 16 O -0.943 6.943 17 C -0.724 4.724 18 C -0.170 4.170 19 C -0.211 4.211 20 C -0.203 4.203 21 C -0.092 4.092 22 C -0.188 4.188 23 H 0.096 0.904 24 H 0.115 0.885 25 H 0.110 0.890 26 H 0.241 0.759 27 H 0.158 0.842 28 H 0.146 0.854 29 H 0.130 0.870 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.135 -9.195 5.175 11.007 hybrid contribution 0.723 0.592 -0.762 1.205 sum 3.857 -8.603 4.414 10.410 Atomic orbital electron populations 1.69859 1.07739 1.29829 1.32667 1.26015 0.94782 1.01723 0.92073 0.86254 0.80821 0.80287 0.79208 1.19410 1.19801 1.18215 1.19678 0.98533 0.91401 1.38045 0.89964 1.17746 0.90766 0.92117 0.87826 1.20623 1.04291 0.92572 1.07218 1.20502 0.94987 0.97019 0.97303 1.16650 1.00229 0.84023 1.12920 1.52275 1.60306 1.33939 1.32281 1.05610 0.76869 0.73672 0.74160 1.93525 1.67388 1.49685 1.86296 1.93582 1.81658 1.52702 1.66371 1.30167 1.28860 1.10821 1.02581 1.21661 0.99966 0.99584 0.95776 1.23117 1.03640 0.90558 1.03764 1.22984 0.92005 1.02407 1.02859 1.20788 0.98167 0.91978 0.98311 1.20996 0.99676 0.96970 1.01157 0.90404 0.88533 0.89014 0.75885 0.84182 0.85438 0.87036 0.88216 0.88284 0.88207 0.88299 0.88182 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.03 10.99 55.54 0.61 -18.42 16 2 C 0.07 1.75 5.12 -17.33 -0.09 1.66 16 3 Si 0.91 17.51 29.60 -169.99 -5.03 12.48 16 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.45 -11.09 9.03 -37.87 -0.34 -11.43 16 8 H 0.08 1.93 7.91 -52.49 -0.42 1.51 16 9 C 0.12 2.97 5.57 -106.79 -0.60 2.37 16 10 C -0.23 -5.08 9.74 -39.26 -0.38 -5.47 16 11 C -0.08 -1.55 9.90 -39.77 -0.39 -1.95 16 12 C -0.04 -0.87 5.69 -83.69 -0.48 -1.35 16 13 N -1.03 -17.96 5.55 32.51 0.18 -17.78 16 14 S 2.60 43.55 5.38 -107.50 -0.58 42.97 16 15 O -0.98 -17.82 18.08 -57.54 -1.04 -18.86 16 16 O -0.95 -19.42 16.91 -57.54 -0.97 -20.40 16 17 C -0.60 -8.07 6.26 37.16 0.23 -7.84 16 18 C -0.15 -1.86 5.75 -90.62 -0.52 -2.38 16 19 C -0.17 -1.78 10.18 -26.73 -0.27 -2.05 16 20 C -0.16 -1.69 10.25 -26.74 -0.27 -1.97 16 21 C -0.07 -1.66 9.15 -39.77 -0.36 -2.02 16 22 C -0.17 -4.21 8.64 -39.26 -0.34 -4.54 16 23 H 0.28 6.31 8.30 -40.82 -0.34 5.98 16 24 H 0.10 2.01 8.06 -52.48 -0.42 1.59 16 25 H 0.09 1.57 8.06 -52.49 -0.42 1.14 16 26 H 0.40 6.17 8.91 -34.47 -0.31 5.86 16 27 H 0.14 1.96 8.14 -51.93 -0.42 1.54 16 28 H 0.13 1.46 7.88 -51.93 -0.41 1.05 16 29 H 0.11 1.35 8.06 -51.93 -0.42 0.93 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.10 0.94 8.03 -51.93 -0.42 0.52 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.10 2.30 7.78 -52.49 -0.41 1.89 16 35 H 0.12 3.13 6.17 -52.49 -0.32 2.81 16 LS Contribution 314.82 15.07 4.74 4.74 Total: -1.00 -29.67 314.82 -10.27 -39.94 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -4.37 Total: 12.28 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: -3.82 Total: -36.96 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.79 Total: -36.20 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -2.01 Total: -39.25 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Atomic # 16 Polarization: 43.55 SS G_CDS: -0.58 Total: 42.97 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.67 -10.27 -39.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078723115.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.000 kcal (2) G-P(sol) polarization free energy of solvation -29.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds