Wall clock time and date at job start Tue Mar 31 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86805 * 119.99535 * 2 1 4 4 H 1.48490 * 109.47244 * 274.66158 * 3 2 1 5 5 H 1.48497 * 109.47232 * 34.66877 * 3 2 1 6 6 H 1.48507 * 109.47055 * 154.66504 * 3 2 1 7 7 C 1.39946 * 120.00604 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00099 * 162.22718 * 7 2 1 9 9 C 1.41398 * 119.99788 * 342.23989 * 7 2 1 10 10 C 1.40710 * 120.24408 * 155.28419 * 9 7 2 11 11 C 1.37621 * 119.74488 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24420 * 359.97438 * 11 10 9 13 13 S 1.76202 * 119.74322 * 180.02562 * 12 11 10 14 14 O 1.42095 * 106.40503 * 336.45892 * 13 12 11 15 15 O 1.42107 * 106.39880 * 203.54003 * 13 12 11 16 16 N 1.65604 * 107.21728 * 90.00189 * 13 12 11 17 17 C 1.47024 * 125.64688 * 89.99467 * 16 13 12 18 18 C 1.54325 * 107.40071 * 181.01629 * 17 16 13 19 19 C 1.55550 * 102.75803 * 22.24049 * 18 17 16 20 20 C 1.47419 * 125.64765 * 270.03667 * 16 13 12 21 21 C 1.38628 * 120.50342 * 0.29571 * 12 11 10 22 22 C 1.37621 * 120.24774 * 359.44766 * 21 12 11 23 23 H 0.96996 * 120.00257 * 359.97438 * 1 2 3 24 24 H 1.07995 * 120.12720 * 359.97438 * 10 9 7 25 25 H 1.07998 * 119.87776 * 179.97438 * 11 10 9 26 26 H 1.08997 * 109.88752 * 300.51678 * 17 16 13 27 27 H 1.09003 * 109.87894 * 61.52701 * 17 16 13 28 28 H 1.09001 * 110.71589 * 140.63599 * 18 17 16 29 29 H 1.08996 * 110.72003 * 263.91042 * 18 17 16 30 30 H 1.09000 * 110.96202 * 206.39699 * 19 18 17 31 31 H 1.09009 * 111.02411 * 82.56006 * 19 18 17 32 32 H 1.08994 * 110.36868 * 274.67233 * 20 16 13 33 33 H 1.09007 * 110.36486 * 36.89175 * 20 16 13 34 34 H 1.08001 * 119.87653 * 179.70337 * 21 12 11 35 35 H 1.07998 * 120.12258 * 180.27700 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6179 0.0000 4 1 2.3911 2.1034 -1.3953 5 1 1.4924 2.6222 0.7964 6 1 3.5856 1.4139 0.5991 7 6 2.0081 -1.2119 0.0005 8 1 3.0494 -1.2342 -0.2849 9 6 1.3517 -2.4071 0.3746 10 6 1.8220 -3.6493 -0.0900 11 6 1.1750 -4.8061 0.2800 12 6 0.0642 -4.7508 1.1078 13 16 -0.7537 -6.2403 1.5739 14 8 -0.4413 -7.1997 0.5733 15 8 -2.0848 -5.8774 1.9142 16 7 -0.0425 -6.7734 2.9712 17 6 -0.4601 -6.4172 4.3352 18 6 0.5030 -7.1240 5.3121 19 6 1.7580 -7.3828 4.4303 20 6 1.1146 -7.6830 3.0535 21 6 -0.4112 -3.5322 1.5670 22 6 0.2232 -2.3631 1.2140 23 1 -0.4850 0.8400 0.0004 24 1 2.6869 -3.6945 -0.7352 25 1 1.5339 -5.7606 -0.0757 26 1 -0.3999 -5.3374 4.4713 27 1 -1.4811 -6.7563 4.5107 28 1 0.7467 -6.4731 6.1518 29 1 0.0760 -8.0636 5.6624 30 1 2.3201 -8.2426 4.7948 31 1 2.3908 -6.4966 4.3810 32 1 0.7853 -8.7210 3.0070 33 1 1.8201 -7.4731 2.2494 34 1 -1.2802 -3.5006 2.2075 35 1 -0.1462 -1.4152 1.5765 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081298090.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:41 Heat of formation + Delta-G solvation = -65.586716 kcal Electronic energy + Delta-G solvation = -19913.442952 eV Core-core repulsion = 16809.444281 eV Total energy + Delta-G solvation = -3103.998670 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.08550 -37.56493 -36.48679 -35.11045 -34.03423 -30.66180 -30.24825 -29.47191 -28.85487 -25.80880 -22.35903 -21.45720 -21.21179 -21.01488 -18.47587 -17.62573 -17.22506 -16.70942 -15.92391 -15.43047 -14.90331 -14.14060 -13.67780 -13.60448 -13.38127 -13.26406 -13.07704 -12.54928 -12.37418 -12.18832 -11.74489 -11.48735 -11.41479 -11.31530 -11.23398 -11.21145 -11.18225 -11.05079 -10.86916 -10.68345 -10.44841 -9.75595 -9.61729 -9.47894 -8.61733 -7.94753 -7.70184 -7.13715 -4.79689 1.19086 2.26602 2.87044 2.88939 2.92514 2.95541 3.65373 3.69853 4.25632 4.53897 4.54845 4.72020 4.98245 5.20145 5.37486 5.39674 5.54422 5.67266 5.76792 5.86263 5.93435 6.04742 6.06583 6.11481 6.22836 6.42643 6.61449 6.68513 6.76909 6.98272 7.05631 7.34288 7.42687 7.63696 7.76894 7.97043 8.32014 8.51361 8.65288 9.77954 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.026092 B = 0.004827 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.868487 B = 5799.277196 C = 6034.677021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.436 4.436 8 H 0.087 0.913 9 C 0.139 3.861 10 C -0.239 4.239 11 C 0.001 3.999 12 C -0.787 4.787 13 S 2.706 3.294 14 O -0.981 6.981 15 O -0.979 6.979 16 N -1.017 6.017 17 C 0.121 3.879 18 C -0.128 4.128 19 C -0.132 4.132 20 C 0.124 3.876 21 C -0.015 4.015 22 C -0.183 4.183 23 H 0.289 0.711 24 H 0.100 0.900 25 H 0.103 0.897 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 -6.825 8.503 11.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.463 4.463 8 H 0.105 0.895 9 C 0.136 3.864 10 C -0.259 4.259 11 C -0.019 4.019 12 C -0.883 4.883 13 S 2.807 3.193 14 O -0.972 6.972 15 O -0.970 6.970 16 N -0.854 5.854 17 C -0.005 4.005 18 C -0.167 4.167 19 C -0.170 4.170 20 C -0.002 4.002 21 C -0.035 4.035 22 C -0.204 4.204 23 H 0.101 0.899 24 H 0.118 0.882 25 H 0.121 0.879 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.108 -7.115 7.999 10.911 hybrid contribution 0.774 1.425 -0.068 1.623 sum 2.882 -5.690 7.930 10.177 Atomic orbital electron populations 1.69826 1.07943 1.30395 1.30599 1.26145 0.94875 1.02138 0.91848 0.86148 0.80747 0.79635 0.79512 1.19091 1.19585 1.18011 1.19929 0.98479 0.91213 1.36725 0.89453 1.17853 0.90068 0.92147 0.86369 1.21019 1.04314 0.92820 1.07759 1.20158 0.91890 0.97377 0.92472 1.29238 1.18516 1.15584 1.24962 1.00891 0.73170 0.74062 0.71147 1.93473 1.85516 1.61659 1.56531 1.93477 1.34792 1.84933 1.83824 1.58923 1.45441 1.60864 1.20135 1.21616 0.98089 0.99734 0.81027 1.22680 0.95601 1.00775 0.97610 1.22858 0.97245 1.02274 0.94671 1.21875 0.87065 0.93163 0.98095 1.20250 0.95880 0.91797 0.95604 1.21332 0.99803 0.96880 1.02346 0.89944 0.88185 0.87899 0.91630 0.91619 0.90376 0.90956 0.90428 0.90411 0.91875 0.90755 0.87946 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.52 10.97 55.55 0.61 -17.91 16 2 C 0.07 1.68 5.14 -17.34 -0.09 1.59 16 3 Si 0.92 17.02 29.60 -169.99 -5.03 11.99 16 4 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 7 C -0.44 -10.75 9.05 -37.74 -0.34 -11.10 16 8 H 0.09 2.03 7.91 -52.49 -0.41 1.61 16 9 C 0.14 3.57 5.57 -106.83 -0.60 2.97 16 10 C -0.24 -5.71 9.80 -38.87 -0.38 -6.09 16 11 C 0.00 0.03 9.49 -39.66 -0.38 -0.35 16 12 C -0.79 -17.83 6.00 -39.29 -0.24 -18.06 16 13 S 2.71 54.87 5.93 -107.50 -0.64 54.23 16 14 O -0.98 -21.54 16.84 -57.17 -0.96 -22.51 16 15 O -0.98 -21.89 16.84 -57.17 -0.96 -22.85 16 16 N -1.02 -16.39 3.70 -111.42 -0.41 -16.80 16 17 C 0.12 1.64 6.98 -3.06 -0.02 1.62 16 18 C -0.13 -1.29 6.98 -24.68 -0.17 -1.46 16 19 C -0.13 -1.37 7.10 -24.37 -0.17 -1.54 16 20 C 0.12 1.64 6.98 -2.53 -0.02 1.62 16 21 C -0.01 -0.36 9.49 -39.66 -0.38 -0.73 16 22 C -0.18 -4.64 8.70 -38.87 -0.34 -4.98 16 23 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 24 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 25 H 0.10 2.11 7.60 -52.49 -0.40 1.71 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 34 H 0.10 2.26 7.59 -52.49 -0.40 1.86 16 35 H 0.12 3.10 6.18 -52.49 -0.32 2.78 16 LS Contribution 307.23 15.07 4.63 4.63 Total: -1.00 -30.14 307.23 -10.36 -40.50 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.48 Total: 5.22 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: -3.12 Total: -36.51 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.20 Total: -34.71 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -1.93 Total: -45.36 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Atomic # 16 Polarization: 54.87 SS G_CDS: -0.64 Total: 54.23 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.14 -10.36 -40.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081298090.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.086 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds