Wall clock time and date at job start Tue Mar 31 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99749 * 2 1 4 4 H 1.48500 * 109.47018 * 269.99300 * 3 2 1 5 5 H 1.48499 * 109.47325 * 29.99682 * 3 2 1 6 6 H 1.48502 * 109.46841 * 149.99909 * 3 2 1 7 7 C 1.37878 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99909 * 196.81110 * 7 2 1 9 9 C 1.50697 * 119.99703 * 16.80604 * 7 2 1 10 10 C 1.53003 * 115.55020 * 39.77679 * 9 7 2 11 11 O 1.42904 * 109.46912 * 81.19718 * 10 9 7 12 12 C 1.35899 * 116.99355 * 184.71024 * 11 10 9 13 13 C 1.38710 * 120.04654 * 354.74018 * 12 11 10 14 14 C 1.38342 * 119.91927 * 179.97438 * 13 12 11 15 15 F 1.35102 * 119.99880 * 179.97438 * 14 13 12 16 16 C 1.38523 * 120.00584 * 0.02562 * 14 13 12 17 17 C 1.38206 * 120.08756 * 359.97438 * 16 14 13 18 18 C 1.38179 * 120.07471 * 359.74700 * 17 16 14 19 19 N 1.48010 * 119.99994 * 180.27860 * 18 17 16 20 20 O 1.21794 * 119.99985 * 5.34817 * 19 18 17 21 21 O 1.21795 * 119.99790 * 185.34947 * 19 18 17 22 22 C 1.53003 * 117.49783 * 185.43974 * 9 7 2 23 23 C 1.53003 * 60.02993 * 107.50735 * 22 9 7 24 24 H 0.97000 * 120.00008 * 4.99319 * 1 2 3 25 25 H 1.09000 * 109.47389 * 201.19835 * 10 9 7 26 26 H 1.09000 * 109.46586 * 321.20157 * 10 9 7 27 27 H 1.07994 * 120.04083 * 359.95543 * 13 12 11 28 28 H 1.08000 * 119.95472 * 180.02562 * 16 14 13 29 29 H 1.07993 * 119.96395 * 180.02562 * 17 16 14 30 30 H 1.08999 * 117.50006 * 215.01007 * 22 9 7 31 31 H 1.08998 * 117.49577 * 0.02562 * 22 9 7 32 32 H 1.08997 * 117.49330 * 107.50379 * 23 22 9 33 33 H 1.09000 * 117.49449 * 252.52593 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0500 -1.2138 0.2711 9 6 1.2994 -2.4714 -0.3762 10 6 0.3126 -2.3617 -1.5404 11 8 1.0269 -2.4143 -2.7769 12 6 0.3059 -2.2306 -3.9141 13 6 -1.0747 -2.1134 -3.8498 14 6 -1.8061 -1.9259 -5.0090 15 9 -3.1509 -1.8120 -4.9483 16 6 -1.1597 -1.8559 -6.2322 17 6 0.2159 -1.9726 -6.2966 18 6 0.9504 -2.1542 -5.1403 19 7 2.4240 -2.2728 -5.2106 20 8 2.9978 -2.1134 -6.2730 21 8 3.0628 -2.5299 -4.2059 22 6 2.0816 -3.7786 -0.2341 23 6 0.9578 -3.4495 0.7506 24 1 -0.4850 0.8369 -0.0731 25 1 -0.3964 -3.1884 -1.4949 26 1 -0.2263 -1.4167 -1.4719 27 1 -1.5782 -2.1687 -2.8960 28 1 -1.7314 -1.7091 -7.1366 29 1 0.7179 -1.9173 -7.2512 30 1 1.8933 -4.5604 -0.9699 31 1 3.1062 -3.7147 0.1324 32 1 0.0301 -4.0149 0.6625 33 1 1.2431 -3.1686 1.7644 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088272155.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:55 Heat of formation + Delta-G solvation = -31.385139 kcal Electronic energy + Delta-G solvation = -22121.325290 eV Core-core repulsion = 18452.596536 eV Total energy + Delta-G solvation = -3668.728755 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.30277 -41.75997 -39.92582 -37.74369 -36.19968 -35.81540 -32.34621 -31.58714 -30.52493 -26.96212 -25.90913 -25.58781 -22.87061 -22.29909 -21.27325 -19.46744 -19.14330 -18.34844 -18.19315 -17.13437 -17.02655 -16.14474 -15.98189 -15.93701 -15.26406 -14.79553 -14.57922 -14.38176 -13.71929 -13.71420 -13.14944 -12.37033 -12.15366 -11.80945 -11.74894 -11.21785 -11.08770 -10.95896 -10.68325 -10.62380 -10.60989 -10.48788 -10.31841 -9.67807 -9.44895 -9.29041 -8.87027 -8.55262 -8.20785 -6.29903 -4.25318 0.04661 0.93661 1.52648 1.78228 3.11366 3.22201 3.26164 3.29898 3.34473 3.79119 4.28667 4.30969 4.55252 4.67412 4.80217 4.91606 5.34339 5.42668 5.51533 5.58967 5.72324 5.79785 5.98870 6.21105 6.22241 6.41218 6.50359 6.61855 6.77849 6.86061 7.17362 7.20618 7.57978 7.71677 8.12548 8.19648 8.70743 9.34195 10.76632 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013973 B = 0.006713 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.377351 B = 4169.782105 C = 4526.037064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.475 4.475 8 H 0.068 0.932 9 C 0.047 3.953 10 C 0.072 3.928 11 O -0.254 6.254 12 C 0.245 3.755 13 C -0.255 4.255 14 C 0.193 3.807 15 F -0.123 7.123 16 C -0.211 4.211 17 C 0.009 3.991 18 C -0.109 4.109 19 N 0.039 4.961 20 O -0.202 6.202 21 O -0.116 6.116 22 C -0.192 4.192 23 C -0.187 4.187 24 H 0.264 0.736 25 H 0.039 0.961 26 H 0.121 0.879 27 H 0.166 0.834 28 H 0.154 0.846 29 H 0.163 0.837 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 -3.977 -10.191 12.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.511 4.511 8 H 0.086 0.914 9 C 0.047 3.953 10 C -0.001 4.001 11 O -0.162 6.162 12 C 0.191 3.809 13 C -0.275 4.275 14 C 0.173 3.827 15 F -0.101 7.101 16 C -0.230 4.230 17 C -0.010 4.010 18 C -0.195 4.195 19 N 0.557 4.443 20 O -0.405 6.405 21 O -0.342 6.342 22 C -0.229 4.229 23 C -0.225 4.225 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.138 0.862 27 H 0.183 0.817 28 H 0.172 0.828 29 H 0.180 0.820 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.856 -3.799 -10.088 12.268 hybrid contribution 0.167 0.869 0.085 0.888 sum -5.689 -2.931 -10.003 11.875 Atomic orbital electron populations 1.69880 1.06055 1.27381 1.48982 1.24938 0.94809 0.99411 0.94360 0.86599 0.80307 0.82913 0.78492 1.20402 1.21192 1.19375 1.20583 0.96190 0.89776 1.44593 0.91364 1.18731 0.95772 0.89985 0.90848 1.23260 0.94820 1.03487 0.78515 1.86514 1.36581 1.80311 1.12808 1.18545 0.89457 0.85728 0.87124 1.21353 0.92605 1.13027 1.00488 1.17655 0.77201 0.94017 0.93840 1.91561 1.29021 1.92295 1.97220 1.20866 0.93830 1.10835 0.97494 1.20615 0.92861 0.90313 0.97236 1.20537 0.80878 1.23724 0.94356 1.43198 1.02707 0.97999 1.00442 1.94462 1.71198 1.56275 1.18585 1.94689 1.65654 1.48676 1.25142 1.22808 0.96462 1.00964 1.02692 1.23028 0.97643 1.05485 0.96361 0.92650 0.94331 0.86157 0.81689 0.82824 0.81970 0.90958 0.89920 0.91546 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.16 11.10 55.43 0.62 -22.54 16 2 C 0.07 1.73 5.11 -17.82 -0.09 1.64 16 3 Si 0.89 20.72 29.57 -169.99 -5.03 15.70 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.47 -12.54 8.98 -34.44 -0.31 -12.85 16 8 H 0.07 1.83 7.87 -52.49 -0.41 1.41 16 9 C 0.05 1.12 1.93 -155.62 -0.30 0.82 16 10 C 0.07 1.57 4.43 37.16 0.16 1.73 16 11 O -0.25 -5.42 8.13 -41.50 -0.34 -5.76 16 12 C 0.25 4.41 6.66 -39.22 -0.26 4.15 16 13 C -0.25 -3.92 9.01 -39.37 -0.35 -4.27 16 14 C 0.19 2.49 7.30 -39.44 -0.29 2.20 16 15 F -0.12 -1.54 17.27 2.25 0.04 -1.50 16 16 C -0.21 -2.30 10.02 -39.49 -0.40 -2.69 16 17 C 0.01 0.11 9.55 -39.61 -0.38 -0.27 16 18 C -0.11 -1.84 6.86 -79.79 -0.55 -2.39 16 19 N 0.04 0.75 4.45 34.04 0.15 0.90 16 20 O -0.20 -3.69 18.46 -29.46 -0.54 -4.24 16 21 O -0.12 -2.51 17.25 -36.48 -0.63 -3.14 16 22 C -0.19 -4.05 9.92 -26.73 -0.27 -4.32 16 23 C -0.19 -3.98 9.89 -26.69 -0.26 -4.24 16 24 H 0.26 6.60 8.32 -40.82 -0.34 6.27 16 25 H 0.04 0.74 7.50 -51.93 -0.39 0.35 16 26 H 0.12 2.82 4.96 -51.93 -0.26 2.56 16 27 H 0.17 2.51 6.33 -52.49 -0.33 2.18 16 28 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.16 1.61 7.62 -52.49 -0.40 1.21 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.07 1.28 8.08 -51.93 -0.42 0.87 16 33 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 300.38 15.07 4.53 4.53 Total: -1.00 -27.87 300.38 -7.53 -35.40 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -3.04 Total: 1.15 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -3.29 Total: -20.49 kcal Atomic # 7 Polarization: -22.41 SS G_CDS: 0.77 Total: -21.64 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -1.51 Total: -13.14 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.87 -7.53 -35.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088272155.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.017 kcal (2) G-P(sol) polarization free energy of solvation -27.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds