Wall clock time and date at job start Tue Mar 31 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36936 * 120.00105 * 2 1 4 4 H 1.08001 * 120.00105 * 201.29349 * 3 2 1 5 5 C 1.38811 * 119.99948 * 21.28551 * 3 2 1 6 6 N 1.31610 * 120.00057 * 15.31847 * 5 3 2 7 7 Si 1.86803 * 119.99917 * 195.31016 * 5 3 2 8 8 H 1.48492 * 109.47187 * 0.02562 * 7 5 3 9 9 H 1.48502 * 109.46683 * 120.00479 * 7 5 3 10 10 H 1.48502 * 109.47331 * 240.00136 * 7 5 3 11 11 C 1.46502 * 119.99916 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47291 * 270.74753 * 11 2 1 13 13 C 1.38264 * 119.99636 * 359.60049 * 12 11 2 14 14 C 1.38218 * 119.99604 * 179.80639 * 13 12 11 15 15 C 1.38257 * 120.00035 * 0.40077 * 14 13 12 16 16 N 1.48022 * 120.00020 * 179.83377 * 15 14 13 17 17 O 1.21796 * 120.00147 * 180.02562 * 16 15 14 18 18 O 1.21800 * 119.99860 * 0.02562 * 16 15 14 19 19 C 1.38211 * 120.00245 * 359.84986 * 15 14 13 20 20 C 1.38209 * 120.00371 * 179.87211 * 12 11 2 21 21 N 1.48014 * 119.99932 * 359.97438 * 20 12 11 22 22 O 1.21804 * 120.00484 * 182.86298 * 21 20 12 23 23 O 1.21806 * 119.99911 * 2.86222 * 21 20 12 24 24 H 1.09000 * 109.47611 * 275.10830 * 1 2 3 25 25 H 1.08999 * 109.46858 * 35.11371 * 1 2 3 26 26 H 1.09007 * 109.47182 * 155.10922 * 1 2 3 27 27 H 0.96998 * 120.00610 * 179.97438 * 6 5 3 28 28 H 1.08996 * 109.47191 * 30.75246 * 11 2 1 29 29 H 1.09009 * 109.47004 * 150.75316 * 11 2 1 30 30 H 1.07992 * 119.99886 * 359.97438 * 13 12 11 31 31 H 1.07994 * 119.99676 * 180.23333 * 14 13 12 32 32 H 1.07995 * 120.00309 * 179.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1743 1.2178 -0.3397 5 6 1.5266 2.3470 0.4364 6 7 0.4064 2.2745 1.1234 7 14 2.2783 4.0126 0.0488 8 1 3.5280 3.8224 -0.7304 9 1 1.3165 4.8165 -0.7474 10 1 2.5876 4.7231 1.3156 11 6 2.1974 -1.2688 0.0006 12 6 2.4325 -1.7125 1.4214 13 6 1.9787 -0.9365 2.4720 14 6 2.1908 -1.3455 3.7751 15 6 2.8641 -2.5262 4.0282 16 7 3.0945 -2.9624 5.4238 17 8 3.6880 -4.0023 5.6468 18 8 2.6905 -2.2812 6.3493 19 6 3.3223 -3.2993 2.9781 20 6 3.1068 -2.8921 1.6745 21 7 3.5974 -3.7200 0.5499 22 8 4.1455 -4.7850 0.7714 23 8 3.4531 -3.3363 -0.5971 24 1 -0.3634 0.0915 1.0236 25 1 -0.3633 0.8406 -0.5911 26 1 -0.3634 -0.9323 -0.4326 27 1 -0.0289 3.0858 1.4287 28 1 1.6143 -2.0252 -0.5245 29 1 3.1557 -1.1353 -0.5016 30 1 1.4561 -0.0124 2.2743 31 1 1.8330 -0.7414 4.5956 32 1 3.8486 -4.2213 3.1758 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090359907.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:09 Heat of formation + Delta-G solvation = 51.890739 kcal Electronic energy + Delta-G solvation = -22014.757267 eV Core-core repulsion = 18369.559587 eV Total energy + Delta-G solvation = -3645.197680 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.40540 -42.05422 -39.58048 -36.73821 -36.62393 -36.02777 -33.00661 -32.04591 -31.02104 -27.92512 -26.76234 -26.26913 -24.99766 -23.02836 -22.22795 -21.05737 -20.00334 -18.95346 -18.43094 -17.69034 -17.59504 -17.49146 -17.13205 -16.12631 -15.69083 -14.90048 -14.39394 -14.11730 -13.62180 -13.24954 -12.77535 -12.20820 -12.02995 -11.88650 -11.63742 -11.46812 -11.30322 -11.20711 -11.18334 -11.15550 -11.01562 -10.89848 -10.69316 -10.34599 -10.22581 -9.90315 -9.35572 -8.95463 -7.33693 -6.18716 -3.61783 -0.34282 -0.13833 1.06207 1.19406 1.34230 1.55671 3.05207 3.15357 3.25447 3.26314 4.07429 4.22201 4.27408 4.29024 4.68036 4.69132 5.02335 5.10611 5.29983 5.38371 5.67382 5.83039 5.92697 6.21262 6.25677 6.36633 6.45565 6.56187 6.97864 7.29149 7.44642 7.56695 7.69833 7.91685 8.77280 9.36185 9.83236 10.84760 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015832 B = 0.006120 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.163161 B = 4573.805731 C = 5789.417449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.150 3.850 2 N -0.593 5.593 3 C -0.264 4.264 4 H 0.076 0.924 5 C 0.009 3.991 6 N -0.897 5.897 7 Si 0.909 3.091 8 H -0.275 1.275 9 H -0.285 1.285 10 H -0.287 1.287 11 C 0.168 3.832 12 C 0.018 3.982 13 C -0.082 4.082 14 C -0.024 4.024 15 C -0.065 4.065 16 N 0.036 4.964 17 O -0.164 6.164 18 O -0.155 6.155 19 C -0.001 4.001 20 C -0.063 4.063 21 N 0.037 4.963 22 O -0.175 6.175 23 O -0.143 6.143 24 H 0.035 0.965 25 H 0.051 0.949 26 H 0.005 0.995 27 H 0.260 0.740 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.201 0.799 31 H 0.163 0.837 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.734 -6.845 2.452 7.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.313 5.313 3 C -0.392 4.392 4 H 0.094 0.906 5 C -0.191 4.191 6 N -0.540 5.540 7 Si 0.738 3.262 8 H -0.200 1.200 9 H -0.211 1.211 10 H -0.214 1.214 11 C 0.039 3.961 12 C 0.011 3.989 13 C -0.100 4.100 14 C -0.044 4.044 15 C -0.149 4.149 16 N 0.555 4.445 17 O -0.378 6.378 18 O -0.371 6.371 19 C -0.021 4.021 20 C -0.148 4.148 21 N 0.554 4.446 22 O -0.385 6.385 23 O -0.360 6.360 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.024 0.976 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.217 0.783 31 H 0.181 0.819 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.263 -6.096 2.351 6.655 hybrid contribution 0.515 0.532 0.163 0.758 sum 1.779 -5.565 2.514 6.360 Atomic orbital electron populations 1.21013 0.81711 0.96685 1.00029 1.44241 1.02381 1.00501 1.84194 1.19381 0.97899 0.84722 1.37194 0.90616 1.25032 0.97598 0.98881 0.97611 1.70007 1.19112 1.28076 1.36844 0.86117 0.78768 0.83359 0.77958 1.20013 1.21146 1.21402 1.20636 0.98866 0.89379 0.87195 1.22318 0.84736 0.87919 1.03878 1.21957 0.98157 1.01885 0.88032 1.21569 0.91040 0.91726 1.00030 1.20731 1.12479 1.00414 0.81273 1.43398 0.98286 0.99969 1.02835 1.94542 1.40348 1.12340 1.90585 1.94550 1.52796 1.53703 1.36085 1.20442 0.93422 0.99471 0.88808 1.20696 1.10788 0.97303 0.86041 1.43340 0.98648 1.00601 1.01963 1.94534 1.43053 1.09908 1.91047 1.94562 1.60214 1.75443 1.05806 0.94632 0.92984 0.97597 0.92952 0.89483 0.88823 0.78259 0.81909 0.81128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 78. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.05 8.69 59.84 0.52 3.57 16 2 N -0.59 -12.24 1.74 -182.50 -0.32 -12.55 16 3 C -0.26 -6.06 9.04 -15.06 -0.14 -6.20 16 4 H 0.08 1.75 7.86 -52.49 -0.41 1.34 16 5 C 0.01 0.21 5.05 -17.43 -0.09 0.12 16 6 N -0.90 -21.74 10.74 55.49 0.60 -21.14 16 7 Si 0.91 19.28 29.58 -169.99 -5.03 14.25 16 8 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 9 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 11 C 0.17 2.94 4.34 -5.19 -0.02 2.92 16 12 C 0.02 0.29 5.88 -104.62 -0.62 -0.33 16 13 C -0.08 -1.33 9.16 -39.58 -0.36 -1.70 16 14 C -0.02 -0.34 9.56 -39.58 -0.38 -0.72 16 15 C -0.06 -0.94 6.85 -79.95 -0.55 -1.49 16 16 N 0.04 0.55 4.45 33.96 0.15 0.70 16 17 O -0.16 -2.55 18.45 -29.46 -0.54 -3.09 16 18 O -0.15 -2.43 18.45 -29.46 -0.54 -2.97 16 19 C 0.00 -0.02 9.06 -39.58 -0.36 -0.38 16 20 C -0.06 -0.96 6.84 -79.95 -0.55 -1.51 16 21 N 0.04 0.60 4.45 33.96 0.15 0.75 16 22 O -0.17 -2.81 18.45 -29.46 -0.54 -3.35 16 23 O -0.14 -2.35 15.43 -29.46 -0.45 -2.80 16 24 H 0.04 0.76 6.85 -51.93 -0.36 0.40 16 25 H 0.05 1.16 7.29 -51.93 -0.38 0.78 16 26 H 0.01 0.10 7.84 -51.92 -0.41 -0.31 16 27 H 0.26 6.21 8.31 -40.82 -0.34 5.87 16 28 H 0.09 1.44 7.10 -51.93 -0.37 1.07 16 29 H 0.09 1.67 7.12 -51.92 -0.37 1.30 16 30 H 0.20 3.85 5.81 -52.49 -0.31 3.55 16 31 H 0.16 2.08 7.61 -52.49 -0.40 1.68 16 32 H 0.17 2.20 7.17 -52.49 -0.38 1.82 16 LS Contribution 290.53 15.07 4.38 4.38 Total: -1.00 -23.82 290.53 -7.20 -31.02 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -2.51 Total: 0.52 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -2.54 Total: -5.71 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.58 Total: -32.24 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -2.09 Total: -12.22 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -23.82 -7.20 -31.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090359907.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.907 kcal (2) G-P(sol) polarization free energy of solvation -23.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds