Wall clock time and date at job start Tue Mar 31 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86806 * 120.00082 * 2 1 4 4 H 1.48496 * 109.46866 * 274.66199 * 3 2 1 5 5 H 1.48498 * 109.46883 * 34.65488 * 3 2 1 6 6 H 1.48493 * 109.47470 * 154.65968 * 3 2 1 7 7 C 1.39940 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00139 * 162.10605 * 7 2 1 9 9 C 1.41396 * 120.00247 * 342.11422 * 7 2 1 10 10 C 1.40716 * 120.23809 * 335.43838 * 9 7 2 11 11 C 1.37624 * 119.74224 * 180.23246 * 10 9 7 12 12 C 1.38629 * 120.24653 * 359.52057 * 11 10 9 13 13 S 1.76201 * 119.74946 * 180.27661 * 12 11 10 14 14 O 1.42107 * 106.40373 * 203.54153 * 13 12 11 15 15 O 1.42102 * 106.40063 * 336.46013 * 13 12 11 16 16 N 1.65598 * 107.21899 * 90.00185 * 13 12 11 17 17 C 1.46505 * 119.99934 * 65.00213 * 16 13 12 18 18 C 1.52998 * 109.47063 * 165.00001 * 17 16 13 19 19 C 1.52998 * 117.49873 * 243.61889 * 18 17 16 20 20 C 1.52994 * 117.49825 * 174.99600 * 18 17 16 21 21 C 1.38642 * 120.50308 * 0.25595 * 12 11 10 22 22 C 1.37612 * 120.24660 * 359.97438 * 21 12 11 23 23 H 0.97002 * 120.00064 * 0.02562 * 1 2 3 24 24 H 1.07997 * 120.13067 * 0.03791 * 10 9 7 25 25 H 1.07999 * 119.87648 * 179.80170 * 11 10 9 26 26 H 0.96995 * 120.00089 * 245.00103 * 16 13 12 27 27 H 1.09001 * 109.46718 * 285.00025 * 17 16 13 28 28 H 1.09000 * 109.46926 * 44.99709 * 17 16 13 29 29 H 1.09000 * 115.55070 * 29.32959 * 18 17 16 30 30 H 1.09000 * 117.49902 * 0.02562 * 19 18 17 31 31 H 1.09006 * 117.49893 * 145.01927 * 19 18 17 32 32 H 1.09001 * 117.50169 * 214.97819 * 20 18 17 33 33 H 1.09004 * 117.50178 * 0.02562 * 20 18 17 34 34 H 1.08003 * 119.87153 * 179.97438 * 21 12 11 35 35 H 1.08001 * 120.12580 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4924 2.6223 0.7961 6 1 3.5856 1.4139 0.5992 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2346 -0.2868 9 6 1.3523 -2.4067 0.3771 10 6 0.2237 -2.3615 1.2163 11 6 -0.4037 -3.5310 1.5804 12 6 0.0663 -4.7496 1.1156 13 16 -0.7515 -6.2384 1.5840 14 8 0.2061 -7.2803 1.4537 15 8 -1.4330 -5.9567 2.7987 16 7 -1.9209 -6.5333 0.4492 17 6 -1.5409 -6.8280 -0.9347 18 6 -2.7403 -7.4195 -1.6779 19 6 -2.6161 -8.8563 -2.1890 20 6 -2.5811 -7.6875 -3.1758 21 6 1.1746 -4.8057 0.2845 22 6 1.8205 -3.6493 -0.0886 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1469 -1.4129 1.5758 25 1 -1.2682 -3.4991 2.2269 26 1 -2.8574 -6.5110 0.7008 27 1 -1.2248 -5.9090 -1.4282 28 1 -0.7198 -7.5448 -0.9412 29 1 -3.7190 -7.0929 -1.3263 30 1 -1.6801 -9.3802 -1.9954 31 1 -3.5133 -9.4753 -2.1736 32 1 -3.4551 -7.5376 -3.8096 33 1 -1.6217 -7.4428 -3.6317 34 1 1.5323 -5.7606 -0.0713 35 1 2.6835 -3.6952 -0.7364 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092130882.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:48 Heat of formation + Delta-G solvation = -65.036650 kcal Electronic energy + Delta-G solvation = -19454.993653 eV Core-core repulsion = 16351.018836 eV Total energy + Delta-G solvation = -3103.974818 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.38489 -38.73806 -38.08792 -36.78489 -35.80808 -35.05282 -32.06576 -31.29731 -27.62208 -27.27879 -23.29266 -23.17318 -22.99746 -21.84250 -20.27525 -19.42396 -18.60543 -18.13784 -17.52348 -17.08076 -16.39478 -15.84111 -15.58174 -15.13455 -14.99710 -14.86457 -14.61376 -14.08817 -13.96379 -13.60301 -13.22045 -13.10770 -13.00311 -12.91675 -12.87677 -12.59194 -12.33777 -12.21636 -12.01543 -11.58120 -11.44978 -11.24699 -11.22322 -11.03541 -10.24034 -9.78753 -9.55306 -8.87632 -6.65103 -0.29403 0.48259 1.05485 1.35887 1.42161 1.52753 2.11419 2.25156 2.52635 2.89027 2.99075 3.53027 3.56949 3.81134 4.03576 4.11166 4.29090 4.32159 4.33351 4.48159 4.81583 4.85182 4.86862 4.92374 5.00014 5.07905 5.11711 5.23806 5.31689 5.34278 5.52393 5.59240 5.76028 5.92842 6.15169 6.20427 6.48896 6.68086 6.80825 8.07648 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021889 B = 0.004601 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.877910 B = 6084.005322 C = 6692.852651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.256 1.256 7 C -0.467 4.467 8 H 0.092 0.908 9 C 0.111 3.889 10 C -0.208 4.208 11 C -0.021 4.021 12 C -0.797 4.797 13 S 2.728 3.272 14 O -1.001 7.001 15 O -1.005 7.005 16 N -1.109 6.109 17 C 0.145 3.855 18 C -0.171 4.171 19 C -0.176 4.176 20 C -0.170 4.170 21 C -0.002 4.002 22 C -0.256 4.256 23 H 0.298 0.702 24 H 0.110 0.890 25 H 0.114 0.886 26 H 0.423 0.577 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.149 -7.172 -5.496 10.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.180 1.180 7 C -0.494 4.494 8 H 0.110 0.890 9 C 0.108 3.892 10 C -0.229 4.229 11 C -0.041 4.041 12 C -0.890 4.890 13 S 2.823 3.177 14 O -0.991 6.991 15 O -0.996 6.996 16 N -0.870 5.870 17 C 0.019 3.981 18 C -0.191 4.191 19 C -0.213 4.213 20 C -0.208 4.208 21 C -0.022 4.022 22 C -0.276 4.276 23 H 0.110 0.890 24 H 0.128 0.872 25 H 0.132 0.868 26 H 0.259 0.741 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.138 0.862 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.116 0.884 34 H 0.145 0.855 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.014 -7.589 -4.830 10.299 hybrid contribution 0.007 1.486 -0.237 1.504 sum -5.008 -6.104 -5.066 9.381 Atomic orbital electron populations 1.69847 1.09366 1.31841 1.30840 1.26994 0.95563 1.05145 0.90685 0.85056 0.79193 0.74971 0.79830 1.18127 1.18771 1.17953 1.20239 0.98975 0.92149 1.38016 0.89005 1.18201 0.90588 0.93361 0.87083 1.21349 1.01138 0.97046 1.03331 1.20459 0.96875 0.91860 0.94924 1.29651 1.16890 1.16872 1.25593 1.00207 0.72348 0.73145 0.72002 1.93455 1.62582 1.56128 1.86914 1.93460 1.75045 1.86550 1.44530 1.55283 1.21769 1.87872 1.22050 1.20920 0.97178 1.00024 0.80016 1.22416 0.99087 1.00333 0.97228 1.23188 1.04089 0.90674 1.03378 1.23075 1.04241 1.02306 0.91136 1.20470 0.91945 0.97830 0.91946 1.21289 1.05295 0.92802 1.08244 0.89041 0.87205 0.86774 0.74069 0.91823 0.90602 0.86192 0.88685 0.87316 0.87157 0.88442 0.85516 0.86942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.26 10.97 21.82 0.24 -38.02 16 2 C 0.04 1.64 5.14 85.26 0.44 2.08 16 3 Si 0.99 34.43 29.60 68.60 2.03 36.46 16 4 H -0.26 -8.50 7.11 99.48 0.71 -7.80 16 5 H -0.26 -8.75 7.11 99.48 0.71 -8.05 16 6 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 7 C -0.47 -23.34 9.05 23.46 0.21 -23.13 16 8 H 0.09 4.33 7.91 -2.91 -0.02 4.30 16 9 C 0.11 5.78 5.57 -21.29 -0.12 5.66 16 10 C -0.21 -10.78 8.70 22.73 0.20 -10.58 16 11 C -0.02 -1.00 9.49 22.22 0.21 -0.79 16 12 C -0.80 -34.92 5.97 22.46 0.13 -34.79 16 13 S 2.73 102.23 5.73 -56.49 -0.32 101.91 16 14 O -1.00 -40.87 16.73 -128.00 -2.14 -43.01 16 15 O -1.01 -42.16 17.26 -128.00 -2.21 -44.36 16 16 N -1.11 -31.71 6.00 -187.48 -1.12 -32.84 16 17 C 0.14 3.76 6.50 86.38 0.56 4.32 16 18 C -0.17 -3.42 5.90 -10.80 -0.06 -3.49 16 19 C -0.18 -3.01 10.18 30.59 0.31 -2.70 16 20 C -0.17 -2.89 10.25 30.59 0.31 -2.57 16 21 C 0.00 -0.10 9.49 22.22 0.21 0.11 16 22 C -0.26 -12.18 9.80 22.73 0.22 -11.96 16 23 H 0.30 12.72 8.30 -92.71 -0.77 11.95 16 24 H 0.11 5.81 6.17 -2.91 -0.02 5.79 16 25 H 0.11 5.00 7.60 -2.91 -0.02 4.98 16 26 H 0.42 9.96 8.54 -96.75 -0.83 9.13 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.08 1.99 7.48 -2.39 -0.02 1.97 16 29 H 0.12 2.14 7.98 -2.39 -0.02 2.12 16 30 H 0.09 1.68 8.03 -2.39 -0.02 1.66 16 31 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.13 4.88 7.60 -2.91 -0.02 4.86 16 35 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -62.98 313.87 -0.62 -63.59 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.28 Total: 34.11 kcal Atomic # 6 Polarization: -80.46 SS G_CDS: 2.63 Total: -77.83 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: -0.89 Total: -70.86 kcal Atomic # 8 Polarization: -83.03 SS G_CDS: -4.35 Total: -87.38 kcal Atomic # 14 Polarization: 34.43 SS G_CDS: 2.03 Total: 36.46 kcal Atomic # 16 Polarization: 102.23 SS G_CDS: -0.32 Total: 101.91 kcal Total: -62.98 -0.62 -63.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130882.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.445 kcal (2) G-P(sol) polarization free energy of solvation -62.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds