Wall clock time and date at job start Tue Mar 31 2020 05:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86800 * 120.00075 * 2 1 4 4 H 1.48505 * 109.47192 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47261 * 300.00168 * 3 2 1 6 6 H 1.48505 * 109.46945 * 59.99821 * 3 2 1 7 7 C 1.39952 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99901 * 197.86618 * 7 2 1 9 9 C 1.41390 * 119.99633 * 17.86866 * 7 2 1 10 10 C 1.40719 * 120.24533 * 24.38550 * 9 7 2 11 11 C 1.37618 * 119.74330 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24946 * 0.02562 * 11 10 9 13 13 S 1.76205 * 119.75177 * 179.97438 * 12 11 10 14 14 O 1.42103 * 106.39732 * 336.46493 * 13 12 11 15 15 O 1.42091 * 106.40367 * 203.54352 * 13 12 11 16 16 N 1.65598 * 107.21829 * 90.00151 * 13 12 11 17 17 C 1.46496 * 120.00286 * 65.00116 * 16 13 12 18 18 C 1.53778 * 113.61693 * 215.00341 * 17 16 13 19 19 C 1.53781 * 87.17205 * 220.05683 * 18 17 16 20 20 C 1.53780 * 87.08055 * 25.39094 * 19 18 17 21 21 C 1.38632 * 120.50023 * 0.25821 * 12 11 10 22 22 C 1.37617 * 120.24969 * 359.44403 * 21 12 11 23 23 H 0.96997 * 119.99777 * 0.02562 * 1 2 3 24 24 H 1.07994 * 120.12849 * 359.97438 * 10 9 7 25 25 H 1.08002 * 119.87544 * 179.97438 * 11 10 9 26 26 H 0.97002 * 119.99790 * 245.00541 * 16 13 12 27 27 H 1.09010 * 112.90312 * 346.25445 * 17 16 13 28 28 H 1.09007 * 113.61480 * 105.46808 * 18 17 16 29 29 H 1.08998 * 113.61669 * 334.64908 * 18 17 16 30 30 H 1.09002 * 113.61460 * 139.93401 * 19 18 17 31 31 H 1.08996 * 113.61591 * 270.84281 * 19 18 17 32 32 H 1.09000 * 113.61844 * 89.11242 * 20 19 18 33 33 H 1.09008 * 113.61465 * 219.93501 * 20 19 18 34 34 H 1.08008 * 119.87312 * 179.70132 * 21 12 11 35 35 H 1.07998 * 120.12693 * 180.27488 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8834 2.3964 -1.2124 6 1 1.8834 2.3964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2875 9 6 1.3521 -2.4071 -0.3746 10 6 0.2210 -2.3625 -1.2106 11 6 -0.4096 -3.5320 -1.5689 12 6 0.0651 -4.7507 -1.1091 13 16 -0.7529 -6.2400 -1.5755 14 8 -2.0855 -5.8777 -1.9109 15 8 -0.4365 -7.2010 -0.5779 16 7 -0.0458 -6.7697 -2.9761 17 6 1.3571 -7.1915 -2.9745 18 6 2.1056 -6.8469 -4.2729 19 6 2.7852 -8.2214 -4.1560 20 6 1.5578 -8.6719 -3.3464 21 6 1.1751 -4.8061 -0.2804 22 6 1.8252 -3.6498 0.0858 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1512 -1.4142 -1.5688 25 1 -1.2782 -3.5003 -2.2100 26 1 -0.5606 -6.8007 -3.7977 27 1 1.8890 -6.8922 -2.0712 28 1 2.7949 -6.0088 -4.1702 29 1 1.4535 -6.7547 -5.1414 30 1 2.8926 -8.7379 -5.1098 31 1 3.7082 -8.2042 -3.5765 32 1 0.7548 -9.0790 -3.9608 33 1 1.8049 -9.3083 -2.4966 34 1 1.5334 -5.7607 0.0758 35 1 2.6924 -3.6956 0.7279 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092132007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:44 Heat of formation + Delta-G solvation = -51.857982 kcal Electronic energy + Delta-G solvation = -19743.245991 eV Core-core repulsion = 16639.842643 eV Total energy + Delta-G solvation = -3103.403348 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.80885 -37.57209 -36.42284 -35.09395 -34.04440 -32.62646 -30.25852 -29.47749 -25.82760 -25.55138 -24.37128 -21.49853 -21.18916 -19.82646 -18.85015 -17.62772 -17.09540 -16.54994 -16.26321 -15.46026 -15.07938 -14.57540 -14.14668 -13.46448 -13.22822 -12.95390 -12.75404 -12.43119 -12.41217 -12.21218 -12.07697 -11.74335 -11.44983 -11.36456 -11.30026 -11.20295 -10.89072 -10.81076 -10.69224 -10.40736 -10.30048 -9.76211 -9.61690 -9.49185 -8.98540 -7.96117 -7.70855 -7.14291 -4.80284 1.28605 2.25280 2.87066 2.89089 2.92211 2.94844 3.65742 3.75622 4.24245 4.49828 4.63669 4.70536 4.87336 4.96751 5.22306 5.35897 5.43788 5.70454 5.74156 5.89483 6.00028 6.04871 6.05500 6.10754 6.15196 6.56923 6.67780 6.70986 6.91924 7.04313 7.30919 7.34797 7.42738 7.63626 7.76820 7.96524 8.31944 8.51063 8.64854 9.77293 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024413 B = 0.004836 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.670092 B = 5788.639905 C = 6368.764647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.436 4.436 8 H 0.088 0.912 9 C 0.139 3.861 10 C -0.184 4.184 11 C -0.014 4.014 12 C -0.787 4.787 13 S 2.690 3.310 14 O -0.986 6.986 15 O -0.985 6.985 16 N -1.113 6.113 17 C 0.137 3.863 18 C -0.147 4.147 19 C -0.142 4.142 20 C -0.154 4.154 21 C -0.002 4.002 22 C -0.238 4.238 23 H 0.289 0.711 24 H 0.122 0.878 25 H 0.103 0.897 26 H 0.409 0.591 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.281 -7.245 -7.245 11.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.463 4.463 8 H 0.106 0.894 9 C 0.135 3.865 10 C -0.204 4.204 11 C -0.034 4.034 12 C -0.883 4.883 13 S 2.789 3.211 14 O -0.977 6.977 15 O -0.975 6.975 16 N -0.867 5.867 17 C 0.029 3.971 18 C -0.187 4.187 19 C -0.180 4.180 20 C -0.194 4.194 21 C -0.022 4.022 22 C -0.258 4.258 23 H 0.100 0.900 24 H 0.140 0.860 25 H 0.121 0.879 26 H 0.242 0.758 27 H 0.131 0.869 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.435 -7.543 -6.618 10.606 hybrid contribution 0.540 1.407 -0.343 1.545 sum 3.975 -6.137 -6.960 10.095 Atomic orbital electron populations 1.69830 1.07946 1.30317 1.30590 1.26146 0.94874 1.02155 0.91855 0.86112 0.81000 0.79905 0.79020 1.17980 1.19242 1.19513 1.19965 0.98540 0.91206 1.36595 0.89412 1.17857 0.90090 0.92153 0.86368 1.21341 0.99832 0.96911 1.02356 1.20250 0.95877 0.91776 0.95492 1.29153 1.18482 1.15544 1.25116 1.01305 0.73048 0.74327 0.72402 1.93493 1.35330 1.84920 1.83956 1.93484 1.85234 1.61123 1.57663 1.55749 1.20543 1.82116 1.28302 1.22196 0.81077 0.94451 0.99393 1.23340 0.99504 0.97765 0.98047 1.22718 0.97626 0.97132 1.00548 1.23486 0.98121 0.97300 1.00453 1.20172 0.92027 0.97375 0.92625 1.21017 1.04206 0.92823 1.07793 0.89982 0.86010 0.87904 0.75773 0.86949 0.90679 0.89748 0.91262 0.89903 0.89838 0.90893 0.87867 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.39 10.95 55.55 0.61 -17.78 16 2 C 0.07 1.66 5.14 -17.34 -0.09 1.57 16 3 Si 0.92 16.94 29.59 -169.99 -5.03 11.91 16 4 H -0.26 -4.68 7.11 56.52 0.40 -4.27 16 5 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 6 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.44 -10.65 9.05 -37.74 -0.34 -10.99 16 8 H 0.09 2.02 7.91 -52.49 -0.41 1.61 16 9 C 0.14 3.51 5.58 -106.83 -0.60 2.92 16 10 C -0.18 -4.62 8.70 -38.87 -0.34 -4.95 16 11 C -0.01 -0.32 9.49 -39.66 -0.38 -0.69 16 12 C -0.79 -17.32 5.97 -39.29 -0.23 -17.56 16 13 S 2.69 52.12 5.68 -107.50 -0.61 51.51 16 14 O -0.99 -21.46 17.26 -57.17 -0.99 -22.44 16 15 O -0.98 -21.02 17.01 -57.17 -0.97 -21.99 16 16 N -1.11 -16.43 5.79 -4.12 -0.02 -16.46 16 17 C 0.14 1.83 4.36 -67.03 -0.29 1.54 16 18 C -0.15 -1.63 7.86 -25.92 -0.20 -1.84 16 19 C -0.14 -1.36 8.08 -25.92 -0.21 -1.57 16 20 C -0.15 -1.72 7.89 -25.83 -0.20 -1.92 16 21 C 0.00 -0.04 9.23 -39.66 -0.37 -0.41 16 22 C -0.24 -5.58 9.80 -38.87 -0.38 -5.96 16 23 H 0.29 6.20 8.30 -40.82 -0.34 5.87 16 24 H 0.12 3.09 6.15 -52.49 -0.32 2.77 16 25 H 0.10 2.24 7.60 -52.49 -0.40 1.84 16 26 H 0.41 5.05 8.94 -34.47 -0.31 4.74 16 27 H 0.11 1.59 7.79 -51.92 -0.40 1.18 16 28 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.10 2.04 7.59 -52.48 -0.40 1.64 16 35 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 309.94 15.07 4.67 4.67 Total: -1.00 -29.88 309.94 -10.32 -40.20 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -4.34 Total: 10.25 kcal Atomic # 6 Polarization: -36.24 SS G_CDS: -3.63 Total: -39.87 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.58 Total: -34.24 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -1.96 Total: -44.44 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.91 kcal Atomic # 16 Polarization: 52.12 SS G_CDS: -0.61 Total: 51.51 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.88 -10.32 -40.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092132007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.657 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds