Wall clock time and date at job start Tue Mar 31 2020 05:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86800 * 120.00075 * 2 1 4 4 H 1.48505 * 109.47192 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47261 * 300.00168 * 3 2 1 6 6 H 1.48505 * 109.46945 * 59.99821 * 3 2 1 7 7 C 1.39952 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99901 * 197.86618 * 7 2 1 9 9 C 1.41390 * 119.99633 * 17.86866 * 7 2 1 10 10 C 1.40719 * 120.24533 * 24.38550 * 9 7 2 11 11 C 1.37618 * 119.74330 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24946 * 0.02562 * 11 10 9 13 13 S 1.76205 * 119.75177 * 179.97438 * 12 11 10 14 14 O 1.42103 * 106.39732 * 336.46493 * 13 12 11 15 15 O 1.42091 * 106.40367 * 203.54352 * 13 12 11 16 16 N 1.65598 * 107.21829 * 90.00151 * 13 12 11 17 17 C 1.46496 * 120.00286 * 65.00116 * 16 13 12 18 18 C 1.53778 * 113.61693 * 215.00341 * 17 16 13 19 19 C 1.53781 * 87.17205 * 220.05683 * 18 17 16 20 20 C 1.53780 * 87.08055 * 25.39094 * 19 18 17 21 21 C 1.38632 * 120.50023 * 0.25821 * 12 11 10 22 22 C 1.37617 * 120.24969 * 359.44403 * 21 12 11 23 23 H 0.96997 * 119.99777 * 0.02562 * 1 2 3 24 24 H 1.07994 * 120.12849 * 359.97438 * 10 9 7 25 25 H 1.08002 * 119.87544 * 179.97438 * 11 10 9 26 26 H 0.97002 * 119.99790 * 245.00541 * 16 13 12 27 27 H 1.09010 * 112.90312 * 346.25445 * 17 16 13 28 28 H 1.09007 * 113.61480 * 105.46808 * 18 17 16 29 29 H 1.08998 * 113.61669 * 334.64908 * 18 17 16 30 30 H 1.09002 * 113.61460 * 139.93401 * 19 18 17 31 31 H 1.08996 * 113.61591 * 270.84281 * 19 18 17 32 32 H 1.09000 * 113.61844 * 89.11242 * 20 19 18 33 33 H 1.09008 * 113.61465 * 219.93501 * 20 19 18 34 34 H 1.08008 * 119.87312 * 179.70132 * 21 12 11 35 35 H 1.07998 * 120.12693 * 180.27488 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8834 2.3964 -1.2124 6 1 1.8834 2.3964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2875 9 6 1.3521 -2.4071 -0.3746 10 6 0.2210 -2.3625 -1.2106 11 6 -0.4096 -3.5320 -1.5689 12 6 0.0651 -4.7507 -1.1091 13 16 -0.7529 -6.2400 -1.5755 14 8 -2.0855 -5.8777 -1.9109 15 8 -0.4365 -7.2010 -0.5779 16 7 -0.0458 -6.7697 -2.9761 17 6 1.3571 -7.1915 -2.9745 18 6 2.1056 -6.8469 -4.2729 19 6 2.7852 -8.2214 -4.1560 20 6 1.5578 -8.6719 -3.3464 21 6 1.1751 -4.8061 -0.2804 22 6 1.8252 -3.6498 0.0858 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1512 -1.4142 -1.5688 25 1 -1.2782 -3.5003 -2.2100 26 1 -0.5606 -6.8007 -3.7977 27 1 1.8890 -6.8922 -2.0712 28 1 2.7949 -6.0088 -4.1702 29 1 1.4535 -6.7547 -5.1414 30 1 2.8926 -8.7379 -5.1098 31 1 3.7082 -8.2042 -3.5765 32 1 0.7548 -9.0790 -3.9608 33 1 1.8049 -9.3083 -2.4966 34 1 1.5334 -5.7607 0.0758 35 1 2.6924 -3.6956 0.7279 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092132007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:44 Heat of formation + Delta-G solvation = -71.201110 kcal Electronic energy + Delta-G solvation = -19744.084772 eV Core-core repulsion = 16639.842643 eV Total energy + Delta-G solvation = -3104.242129 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.76749 -39.37586 -38.09240 -36.77505 -35.81399 -33.81486 -32.07398 -31.30621 -27.62862 -26.42221 -25.35152 -23.29161 -22.99363 -20.85896 -20.27587 -19.42973 -18.65097 -18.08483 -17.53693 -17.10779 -16.19855 -16.00155 -15.82153 -15.20776 -14.96544 -14.16696 -14.01742 -13.95961 -13.70350 -13.52046 -13.46533 -13.25088 -13.10556 -13.00802 -12.97113 -12.87208 -12.58040 -12.00455 -11.76912 -11.64753 -11.54842 -11.32205 -11.22302 -11.16521 -10.21645 -9.79011 -9.55873 -8.87817 -6.65500 -0.28299 0.47855 1.04679 1.35753 1.41675 1.53340 2.11155 2.26764 2.54257 2.94091 3.52020 3.61008 3.72942 3.81106 3.99367 4.07197 4.28432 4.30336 4.37277 4.86344 4.91251 4.91849 4.92763 4.99835 5.10530 5.17643 5.18682 5.23155 5.25603 5.51901 5.58736 5.65088 5.75912 5.92605 6.14750 6.23069 6.48747 6.67755 6.80562 8.07681 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024413 B = 0.004836 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.670092 B = 5788.639905 C = 6368.764647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.033 3.967 3 Si 0.993 3.007 4 H -0.251 1.251 5 H -0.261 1.261 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.093 0.907 9 C 0.110 3.890 10 C -0.208 4.208 11 C -0.021 4.021 12 C -0.796 4.796 13 S 2.722 3.278 14 O -1.010 7.010 15 O -1.001 7.001 16 N -1.097 6.097 17 C 0.112 3.888 18 C -0.145 4.145 19 C -0.130 4.130 20 C -0.151 4.151 21 C -0.003 4.003 22 C -0.255 4.255 23 H 0.298 0.702 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.424 0.576 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.266 -7.943 -8.263 12.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.186 4.186 3 Si 0.812 3.188 4 H -0.174 1.174 5 H -0.186 1.186 6 H -0.188 1.188 7 C -0.492 4.492 8 H 0.111 0.889 9 C 0.107 3.893 10 C -0.229 4.229 11 C -0.041 4.041 12 C -0.889 4.889 13 S 2.817 3.183 14 O -1.000 7.000 15 O -0.991 6.991 16 N -0.856 5.856 17 C 0.005 3.995 18 C -0.184 4.184 19 C -0.168 4.168 20 C -0.191 4.191 21 C -0.023 4.023 22 C -0.275 4.275 23 H 0.109 0.891 24 H 0.128 0.872 25 H 0.131 0.869 26 H 0.260 0.740 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.144 0.856 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.425 -8.229 -7.629 12.062 hybrid contribution 0.195 1.481 -0.066 1.495 sum 4.620 -6.749 -7.695 11.230 Atomic orbital electron populations 1.69868 1.09538 1.31830 1.31049 1.27055 0.95523 1.05359 0.90641 0.84987 0.79552 0.75002 0.79254 1.17446 1.18556 1.18797 1.20263 0.99025 0.92060 1.37857 0.88856 1.18214 0.90657 0.93396 0.87038 1.21358 1.00866 0.97066 1.03573 1.20444 0.96079 0.91975 0.95577 1.29643 1.18092 1.16601 1.24567 1.00379 0.72057 0.73058 0.72790 1.93455 1.36971 1.85129 1.84471 1.93460 1.85388 1.60956 1.59328 1.55311 1.21518 1.81277 1.27452 1.22602 0.79886 0.96692 1.00333 1.23377 0.99361 0.98632 0.97067 1.22692 0.97046 0.95711 1.01314 1.23512 0.99263 0.95422 1.00884 1.20461 0.91787 0.97959 0.92083 1.21258 1.05059 0.92831 1.08337 0.89068 0.87218 0.86893 0.74021 0.88076 0.91287 0.88487 0.89220 0.89311 0.88695 0.90958 0.85611 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.32 10.95 21.83 0.24 -39.08 16 2 C 0.03 1.55 5.14 85.26 0.44 1.99 16 3 Si 0.99 34.51 29.59 68.60 2.03 36.54 16 4 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 5 H -0.26 -8.73 7.11 99.48 0.71 -8.03 16 6 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 7 C -0.47 -23.24 9.05 23.46 0.21 -23.02 16 8 H 0.09 4.37 7.91 -2.91 -0.02 4.35 16 9 C 0.11 5.74 5.58 -21.29 -0.12 5.62 16 10 C -0.21 -10.81 8.70 22.73 0.20 -10.61 16 11 C -0.02 -0.99 9.49 22.22 0.21 -0.78 16 12 C -0.80 -35.05 5.97 22.46 0.13 -34.91 16 13 S 2.72 102.96 5.68 -56.49 -0.32 102.64 16 14 O -1.01 -43.16 17.26 -128.00 -2.21 -45.37 16 15 O -1.00 -41.57 17.01 -128.00 -2.18 -43.75 16 16 N -1.10 -30.50 5.79 -166.95 -0.97 -31.47 16 17 C 0.11 2.78 4.36 45.58 0.20 2.98 16 18 C -0.14 -2.88 7.86 31.12 0.24 -2.63 16 19 C -0.13 -2.08 8.08 31.12 0.25 -1.83 16 20 C -0.15 -2.96 7.89 31.18 0.25 -2.71 16 21 C 0.00 -0.14 9.23 22.22 0.21 0.06 16 22 C -0.25 -12.11 9.80 22.73 0.22 -11.89 16 23 H 0.30 13.00 8.30 -92.71 -0.77 12.23 16 24 H 0.11 5.83 6.15 -2.91 -0.02 5.81 16 25 H 0.11 5.00 7.60 -2.91 -0.02 4.97 16 26 H 0.42 9.53 8.94 -96.75 -0.87 8.66 16 27 H 0.10 2.74 7.79 -2.38 -0.02 2.72 16 28 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.13 4.87 7.59 -2.91 -0.02 4.85 16 35 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -64.33 309.94 -0.72 -65.05 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 0.24 Total: 33.17 kcal Atomic # 6 Polarization: -80.17 SS G_CDS: 2.44 Total: -77.73 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -0.73 Total: -70.55 kcal Atomic # 8 Polarization: -84.73 SS G_CDS: -4.39 Total: -89.12 kcal Atomic # 14 Polarization: 34.51 SS G_CDS: 2.03 Total: 36.54 kcal Atomic # 16 Polarization: 102.96 SS G_CDS: -0.32 Total: 102.64 kcal Total: -64.33 -0.72 -65.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092132007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.150 kcal (2) G-P(sol) polarization free energy of solvation -64.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds