Wall clock time and date at job start Tue Mar 31 2020 05:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 11 11 S 1.81405 * 109.46868 * 180.02562 * 10 9 7 12 12 O 1.42097 * 110.54195 * 291.62676 * 11 10 9 13 13 O 1.42101 * 110.54260 * 68.37560 * 11 10 9 14 14 N 1.65602 * 104.45029 * 180.02562 * 11 10 9 15 15 C 1.46632 * 126.55986 * 269.69219 * 14 11 10 16 16 C 1.50786 * 107.70053 * 179.84834 * 15 14 11 17 17 C 1.38441 * 131.20560 * 180.12747 * 16 15 14 18 18 C 1.38137 * 120.10428 * 180.34429 * 17 16 15 19 19 C 1.38258 * 119.96173 * 359.97438 * 18 17 16 20 20 C 1.38139 * 119.96171 * 0.02562 * 19 18 17 21 21 C 1.38068 * 108.85918 * 0.42131 * 16 15 14 22 22 C 1.46629 * 126.56370 * 89.99892 * 14 11 10 23 23 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 25 25 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 26 26 H 1.09000 * 109.47266 * 299.99671 * 10 9 7 27 27 H 1.08997 * 109.46955 * 60.00501 * 10 9 7 28 28 H 1.09003 * 109.81186 * 299.53918 * 15 14 11 29 29 H 1.08999 * 109.82039 * 60.45044 * 15 14 11 30 30 H 1.08007 * 119.94646 * 0.32159 * 17 16 15 31 31 H 1.07999 * 120.02331 * 179.97438 * 18 17 16 32 32 H 1.08000 * 120.01986 * 179.97438 * 19 18 17 33 33 H 1.08006 * 119.95084 * 180.02562 * 20 19 18 34 34 H 1.09008 * 109.81252 * 299.55143 * 22 14 11 35 35 H 1.09000 * 109.81089 * 60.38411 * 22 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3383 -5.2331 -0.0002 12 8 0.6639 -5.4200 1.2364 13 8 0.6647 -5.4193 -1.2375 14 7 2.5205 -6.3928 0.0006 15 6 3.1404 -7.0089 -1.1768 16 6 4.1632 -8.0036 -0.6888 17 6 5.0201 -8.8436 -1.3791 18 6 5.8737 -9.6821 -0.6886 19 6 5.8727 -9.6822 0.6939 20 6 5.0178 -8.8442 1.3833 21 6 4.1622 -8.0037 0.6919 22 6 3.1432 -7.0045 1.1787 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 0.8902 25 1 0.6248 -2.5571 -0.8897 26 1 2.8720 -3.6043 -0.8895 27 1 2.8719 -3.6043 0.8905 28 1 2.3810 -7.5177 -1.7705 29 1 3.6305 -6.2440 -1.7793 30 1 5.0211 -8.8437 -2.4591 31 1 6.5414 -10.3372 -1.2285 32 1 6.5393 -10.3376 1.2347 33 1 5.0175 -8.8441 2.4634 34 1 3.6346 -6.2373 1.7772 35 1 2.3850 -7.5100 1.7767 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111340908.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:20 Heat of formation + Delta-G solvation = -43.171360 kcal Electronic energy + Delta-G solvation = -19344.594745 eV Core-core repulsion = 16241.568078 eV Total energy + Delta-G solvation = -3103.026667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35270 -36.68230 -36.55633 -35.51065 -33.91708 -31.72189 -31.18767 -30.65822 -27.87283 -25.65688 -24.57308 -21.75654 -21.51149 -21.49183 -18.71307 -17.58958 -16.66335 -16.29839 -16.19349 -15.97870 -15.07250 -14.92384 -14.81419 -14.53022 -13.94142 -13.44591 -13.11735 -13.01241 -12.75402 -12.62130 -12.49590 -11.78784 -11.70812 -11.70038 -11.63765 -11.40428 -11.10825 -11.05421 -10.99049 -10.44110 -10.41749 -9.86166 -9.52873 -9.12097 -9.04899 -8.52465 -8.44809 -6.14360 -4.19995 0.62211 1.08788 1.13799 2.93530 3.24423 3.31739 3.35254 3.49848 3.99495 4.23539 4.33394 4.37223 4.66529 4.78468 4.79828 5.19220 5.19524 5.20952 5.34657 5.36538 5.41615 5.50808 5.58151 5.66286 5.76953 5.77323 6.09442 6.14171 6.17915 6.25918 6.45060 6.53159 6.72748 7.27126 7.32851 7.78876 8.15095 8.83592 9.44944 10.96683 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027995 B = 0.003925 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.936033 B = 7132.720794 C = 7517.990446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.586 4.586 11 S 2.611 3.389 12 O -0.956 6.956 13 O -0.956 6.956 14 N -1.018 6.018 15 C 0.164 3.836 16 C -0.099 4.099 17 C -0.098 4.098 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.098 4.098 21 C -0.099 4.099 22 C 0.164 3.836 23 H 0.265 0.735 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.081 0.919 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.930 -18.375 0.004 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.720 4.720 11 S 2.711 3.289 12 O -0.947 6.947 13 O -0.947 6.947 14 N -0.853 5.853 15 C 0.039 3.961 16 C -0.101 4.101 17 C -0.117 4.117 18 C -0.137 4.137 19 C -0.137 4.137 20 C -0.117 4.117 21 C -0.100 4.100 22 C 0.039 3.961 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.099 0.901 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.737 -18.402 0.002 21.305 hybrid contribution 1.113 1.227 -0.003 1.657 sum 11.850 -17.175 -0.001 20.866 Atomic orbital electron populations 1.69964 1.06117 1.27131 1.49592 1.25075 0.94983 0.99571 0.94869 0.86403 0.79926 0.83116 0.77786 1.19642 1.20770 1.20768 1.21033 0.93113 0.89674 1.52125 0.91960 1.18994 0.92716 0.90525 0.98983 1.30481 1.13748 1.17528 1.10227 1.05317 0.73751 0.75734 0.74116 1.93543 1.70578 1.85180 1.45412 1.93545 1.70605 1.85197 1.45362 1.58779 1.58452 1.56018 1.12038 1.19958 0.93852 0.94418 0.87887 1.20458 0.97389 0.97636 0.94568 1.20512 0.95507 0.95643 1.00028 1.21056 0.99077 0.99134 0.94412 1.21057 0.99062 0.99142 0.94418 1.20513 0.95484 0.95667 1.00026 1.20454 0.97409 0.97612 0.94566 1.19955 0.93874 0.94416 0.87871 0.92549 0.94718 0.94752 0.86128 0.86114 0.89649 0.90135 0.85675 0.85653 0.85654 0.85674 0.90121 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 10 C -0.59 -11.24 6.12 37.16 0.23 -11.01 16 11 S 2.61 47.63 5.68 -107.50 -0.61 47.02 16 12 O -0.96 -19.89 17.65 -57.54 -1.02 -20.90 16 13 O -0.96 -19.88 17.65 -57.54 -1.02 -20.90 16 14 N -1.02 -14.75 3.64 -116.65 -0.42 -15.18 16 15 C 0.16 2.06 6.94 -5.08 -0.04 2.02 16 16 C -0.10 -1.13 6.22 -104.57 -0.65 -1.78 16 17 C -0.10 -0.93 10.05 -39.54 -0.40 -1.32 16 18 C -0.12 -0.98 10.05 -39.61 -0.40 -1.38 16 19 C -0.12 -0.98 10.05 -39.61 -0.40 -1.38 16 20 C -0.10 -0.93 10.05 -39.54 -0.40 -1.32 16 21 C -0.10 -1.13 6.22 -104.57 -0.65 -1.78 16 22 C 0.16 2.06 6.94 -5.08 -0.04 2.02 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 27 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 31 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 33 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 314.34 15.07 4.74 4.74 Total: -1.00 -34.50 314.34 -10.51 -45.01 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.61 Total: -1.76 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: -3.28 Total: -28.51 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.31 Total: -40.83 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -2.03 Total: -41.80 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 47.63 SS G_CDS: -0.61 Total: 47.02 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.50 -10.51 -45.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111340908.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.839 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds