Wall clock time and date at job start Tue Mar 31 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34749 * 117.00146 * 2 1 4 4 O 1.21507 * 119.99637 * 359.97438 * 3 2 1 5 5 C 1.47472 * 120.00349 * 179.97438 * 3 2 1 6 6 C 1.39817 * 120.08972 * 0.02562 * 5 3 2 7 7 C 1.37657 * 119.90422 * 180.25709 * 6 5 3 8 8 C 1.39041 * 120.09100 * 359.43995 * 7 6 5 9 9 O 1.35702 * 119.90272 * 180.25643 * 8 7 6 10 10 C 1.42899 * 117.00302 * 0.30179 * 9 8 7 11 11 C 1.50700 * 109.47131 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99765 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99785 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99723 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 120.00267 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47143 * 90.00171 * 15 13 11 17 17 H 1.48499 * 109.47198 * 210.00310 * 15 13 11 18 18 H 1.48500 * 109.47042 * 329.99882 * 15 13 11 19 19 C 1.38990 * 120.18690 * 0.55631 * 8 7 6 20 20 N 1.48018 * 119.95256 * 179.74338 * 19 8 7 21 21 O 1.21803 * 119.99914 * 179.97438 * 20 19 8 22 22 O 1.21799 * 120.00164 * 359.97438 * 20 19 8 23 23 C 1.37698 * 120.09516 * 359.72837 * 19 8 7 24 24 H 1.09004 * 109.46993 * 60.00085 * 1 2 3 25 25 H 1.08996 * 109.47084 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47413 * 300.00573 * 1 2 3 27 27 H 1.08002 * 120.04519 * 359.97192 * 6 5 3 28 28 H 1.07998 * 119.95535 * 179.69676 * 7 6 5 29 29 H 1.09000 * 109.46753 * 299.99639 * 10 9 8 30 30 H 1.09005 * 109.47022 * 59.99303 * 10 9 8 31 31 H 0.97004 * 119.99909 * 179.97438 * 14 13 11 32 32 H 1.07991 * 120.05132 * 179.97438 * 23 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2196 -0.0005 5 6 3.5364 1.2778 0.0006 6 6 4.2998 0.1065 0.0006 7 6 5.6742 0.1830 0.0065 8 6 6.3034 1.4229 0.0006 9 8 7.6585 1.4938 0.0012 10 6 8.3731 0.2563 0.0012 11 6 9.8547 0.5317 0.0013 12 1 10.2146 1.5499 0.0009 13 6 10.7506 -0.5163 0.0018 14 7 12.0436 -0.2759 0.0014 15 14 10.1280 -2.2774 0.0033 16 1 9.9627 -2.7451 -1.3964 17 1 11.1063 -3.1477 0.7038 18 1 8.8200 -2.3394 0.7037 19 6 5.5483 2.5898 0.0005 20 7 6.2235 3.9070 0.0001 21 8 5.5626 4.9301 -0.0005 22 8 7.4400 3.9678 0.0003 23 6 4.1729 2.5222 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.8118 -0.8570 0.0006 28 1 6.2646 -0.7213 0.0114 29 1 8.1094 -0.3154 0.8910 30 1 8.1100 -0.3151 -0.8890 31 1 12.6740 -1.0133 0.0021 32 1 3.5869 3.4293 0.0009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122833039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:10 Heat of formation + Delta-G solvation = -95.239810 kcal Electronic energy + Delta-G solvation = -21335.393275 eV Core-core repulsion = 17651.522785 eV Total energy + Delta-G solvation = -3683.870490 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.89454 -40.83152 -39.86814 -37.65021 -36.63936 -36.05330 -33.10327 -32.26205 -31.04322 -28.90248 -27.97400 -26.22072 -24.36851 -23.29038 -21.89747 -21.08072 -19.48533 -18.38579 -18.02431 -17.41613 -17.20924 -17.02240 -16.78625 -16.66200 -15.83763 -15.46659 -14.71753 -14.55872 -14.30266 -13.78814 -13.55086 -12.89639 -12.81748 -12.72172 -12.37937 -11.83313 -11.46717 -11.33231 -11.15025 -11.14733 -10.95782 -10.73137 -10.70008 -10.66976 -10.20993 -9.85112 -9.60351 -8.94294 -8.63340 -6.37984 -4.42870 0.03394 0.37497 1.44545 1.61008 2.19751 2.35122 3.02596 3.05202 3.10400 3.23067 3.24770 4.07692 4.26308 4.32440 4.46339 4.55079 4.76619 4.79472 4.85057 4.89400 5.11890 5.26015 5.39553 5.59994 5.68300 5.89414 5.97936 6.03496 6.32925 6.65992 7.04888 7.36963 7.39283 8.03622 8.19985 8.75165 9.13940 10.73867 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.018123 B = 0.004921 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.656395 B = 5688.384659 C = 7212.593758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.355 6.355 3 C 0.521 3.479 4 O -0.505 6.505 5 C -0.190 4.190 6 C 0.026 3.974 7 C -0.230 4.230 8 C 0.248 3.752 9 O -0.250 6.250 10 C 0.157 3.843 11 C -0.535 4.535 12 H 0.095 0.905 13 C 0.082 3.918 14 N -0.878 5.878 15 Si 0.871 3.129 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.266 1.266 19 C -0.108 4.108 20 N 0.037 4.963 21 O -0.193 6.193 22 O -0.114 6.114 23 C 0.049 3.951 24 H 0.065 0.935 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.155 0.845 28 H 0.162 0.838 29 H 0.030 0.970 30 H 0.026 0.974 31 H 0.272 0.728 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.371 -3.888 0.011 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.272 6.272 3 C 0.366 3.634 4 O -0.394 6.394 5 C -0.192 4.192 6 C 0.007 3.993 7 C -0.249 4.249 8 C 0.193 3.807 9 O -0.157 6.157 10 C 0.084 3.916 11 C -0.572 4.572 12 H 0.113 0.887 13 C -0.122 4.122 14 N -0.515 5.515 15 Si 0.697 3.303 16 H -0.195 1.195 17 H -0.201 1.201 18 H -0.191 1.191 19 C -0.193 4.193 20 N 0.555 4.445 21 O -0.398 6.398 22 O -0.339 6.339 23 C 0.030 3.970 24 H 0.083 0.917 25 H 0.122 0.878 26 H 0.083 0.917 27 H 0.173 0.827 28 H 0.179 0.821 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -20.604 -4.114 0.013 21.011 hybrid contribution -0.231 -0.877 -0.010 0.907 sum -20.835 -4.991 0.004 21.424 Atomic orbital electron populations 1.23308 0.75577 1.03896 1.02818 1.86522 1.23834 1.32311 1.84487 1.20690 0.88362 0.81621 0.72740 1.90871 1.66592 1.35886 1.46089 1.18581 0.89873 0.93349 1.17389 1.21583 0.92838 0.98565 0.86274 1.21480 0.95526 0.97103 1.10829 1.19317 0.86442 0.91425 0.83564 1.86519 1.10851 1.37708 1.80579 1.21459 0.93635 0.79725 0.96755 1.20695 0.85639 0.97253 1.53625 0.88665 1.24677 0.94605 0.98766 0.94168 1.69833 1.00967 1.32658 1.48020 0.86946 0.79395 0.84890 0.79108 1.19460 1.20148 1.19074 1.20264 0.92114 0.82348 1.24539 1.43199 1.01415 1.01836 0.98008 1.94495 1.65981 1.23577 1.55742 1.94707 0.94437 1.93635 1.51128 1.20776 0.90748 0.99262 0.86213 0.91667 0.87816 0.91674 0.82702 0.82088 0.95194 0.95653 0.91754 0.81466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.32 16 2 O -0.35 -3.42 9.81 -40.63 -0.40 -3.82 16 3 C 0.52 6.19 7.89 34.49 0.27 6.47 16 4 O -0.51 -7.14 16.13 -19.27 -0.31 -7.46 16 5 C -0.19 -2.30 5.87 -104.97 -0.62 -2.92 16 6 C 0.03 0.28 9.61 -39.20 -0.38 -0.10 16 7 C -0.23 -3.08 9.01 -39.50 -0.36 -3.44 16 8 C 0.25 4.23 6.68 -39.01 -0.26 3.97 16 9 O -0.25 -5.30 8.11 -40.98 -0.33 -5.63 16 10 C 0.16 3.41 3.56 36.01 0.13 3.54 16 11 C -0.53 -14.41 9.99 -34.44 -0.34 -14.76 16 12 H 0.10 2.88 8.06 -52.49 -0.42 2.46 16 13 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 14 N -0.88 -25.20 13.96 55.43 0.77 -24.43 16 15 Si 0.87 18.80 27.47 -169.99 -4.67 14.14 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.27 -5.24 6.54 56.52 0.37 -4.87 16 19 C -0.11 -1.79 6.86 -79.87 -0.55 -2.34 16 20 N 0.04 0.71 4.45 34.00 0.15 0.86 16 21 O -0.19 -3.58 18.44 -29.46 -0.54 -4.12 16 22 O -0.11 -2.46 17.23 -36.51 -0.63 -3.09 16 23 C 0.05 0.68 9.09 -39.20 -0.36 0.33 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.16 1.19 7.60 -52.49 -0.40 0.79 16 28 H 0.16 2.00 6.28 -52.49 -0.33 1.67 16 29 H 0.03 0.62 6.69 -51.93 -0.35 0.27 16 30 H 0.03 0.51 7.09 -51.93 -0.37 0.15 16 31 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.17 2.22 7.18 -52.49 -0.38 1.84 16 LS Contribution 296.57 15.07 4.47 4.47 Total: -1.00 -30.96 296.57 -5.66 -36.62 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -2.68 Total: -1.71 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -1.49 Total: -5.82 kcal Atomic # 7 Polarization: -24.50 SS G_CDS: 0.93 Total: -23.57 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -2.21 Total: -24.12 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.67 Total: 14.14 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.96 -5.66 -36.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122833039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.624 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds