Wall clock time and date at job start Tue Mar 31 2020 05:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86796 * 119.99907 * 2 1 4 4 H 1.48509 * 109.47059 * 240.00215 * 3 2 1 5 5 H 1.48497 * 109.47169 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47241 * 120.00093 * 3 2 1 7 7 C 1.40043 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00155 * 179.97438 * 7 2 1 9 9 C 1.46377 * 120.00458 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99620 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00307 * 179.72666 * 9 7 2 12 12 C 1.46504 * 119.99854 * 180.27510 * 11 9 7 13 13 H 1.08997 * 108.61964 * 324.99474 * 12 11 9 14 14 C 1.51873 * 108.65969 * 206.94277 * 12 11 9 15 15 C 1.53539 * 108.95354 * 178.26011 * 14 12 11 16 16 S 1.81608 * 107.20483 * 72.75389 * 15 14 12 17 17 C 1.76463 * 102.63568 * 313.55210 * 16 15 14 18 18 C 1.39607 * 117.69265 * 192.65314 * 17 16 15 19 19 C 1.37749 * 120.66214 * 181.43911 * 18 17 16 20 20 C 1.38516 * 119.48948 * 359.94308 * 19 18 17 21 21 F 1.35102 * 120.02357 * 179.65899 * 20 19 18 22 22 C 1.37938 * 119.95389 * 359.63878 * 20 19 18 23 23 C 1.38149 * 122.29681 * 13.37203 * 17 16 15 24 24 H 0.97004 * 120.00230 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99736 * 0.26784 * 11 9 7 26 26 H 1.09002 * 109.55845 * 298.22640 * 14 12 11 27 27 H 1.09004 * 109.55854 * 58.54503 * 14 12 11 28 28 H 1.09002 * 109.97512 * 313.31726 * 15 14 12 29 29 H 1.09001 * 109.97188 * 192.19189 * 15 14 12 30 30 H 1.08001 * 119.66398 * 1.41841 * 18 17 16 31 31 H 1.08008 * 120.25213 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.48209 * 180.08441 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6964 -1.2126 5 1 1.2757 2.7464 -0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9491 -3.6477 -0.0045 12 6 1.2165 -4.9164 -0.0106 13 1 0.3096 -4.7975 0.5821 14 6 2.0842 -5.9816 0.6369 15 6 1.3057 -7.3045 0.6735 16 16 1.2473 -7.9406 -1.0265 17 6 0.7882 -6.5134 -1.9572 18 6 0.3887 -6.7032 -3.2813 19 6 0.0457 -5.6290 -4.0725 20 6 0.0979 -4.3493 -3.5448 21 9 -0.2295 -3.2874 -4.3131 22 6 0.4841 -4.1600 -2.2342 23 6 0.8280 -5.2398 -1.4233 24 1 -0.4851 0.8401 -0.0004 25 1 2.9191 -3.6476 -0.0042 26 1 2.9982 -6.1099 0.0570 27 1 2.3348 -5.6796 1.6538 28 1 0.2937 -7.1310 1.0395 29 1 1.8160 -8.0190 1.3195 30 1 0.3484 -7.7023 -3.6895 31 1 -0.2621 -5.7834 -5.0962 32 1 0.5209 -3.1591 -1.8302 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153511413.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:15 Heat of formation + Delta-G solvation = -57.198691 kcal Electronic energy + Delta-G solvation = -19746.032557 eV Core-core repulsion = 16518.937314 eV Total energy + Delta-G solvation = -3227.095243 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.063 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.39706 -39.48695 -37.30808 -35.33127 -32.67470 -31.70849 -30.49845 -30.01908 -27.01293 -25.15787 -23.04431 -22.50294 -20.66760 -19.77415 -17.58713 -17.33165 -16.75699 -16.13392 -15.63057 -15.27534 -15.09549 -14.76651 -14.16129 -14.09209 -13.65221 -13.37707 -12.89555 -12.77195 -12.53176 -12.47151 -12.30140 -11.89207 -11.26618 -11.13287 -11.01500 -10.79194 -10.67657 -10.55597 -10.34198 -9.94255 -9.21428 -8.94250 -8.57682 -7.83340 -7.74302 -7.19884 -6.30120 -4.77198 1.30791 1.54403 1.68473 2.44365 3.10716 3.16403 3.17817 3.78238 4.02928 4.41318 4.48675 4.59859 4.78422 4.90039 5.01216 5.18145 5.30990 5.46440 5.55450 5.68257 5.69329 5.70466 5.94398 6.08131 6.18910 6.32893 6.38861 6.64943 6.77322 7.27096 7.33385 7.74669 7.88591 8.18711 8.91077 9.33043 10.43499 10.61762 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.006137 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.672755 B = 4561.157376 C = 5619.734144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.088 3.912 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.551 3.449 10 O -0.573 6.573 11 N -0.759 5.759 12 C 0.186 3.814 13 H 0.093 0.907 14 C -0.126 4.126 15 C -0.098 4.098 16 S -0.135 6.135 17 C -0.092 4.092 18 C -0.086 4.086 19 C -0.147 4.147 20 C 0.090 3.910 21 F -0.140 7.140 22 C -0.117 4.117 23 C -0.057 4.057 24 H 0.271 0.729 25 H 0.384 0.616 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.716 -12.498 -2.044 13.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.087 0.913 9 C 0.357 3.643 10 O -0.457 6.457 11 N -0.414 5.414 12 C 0.079 3.921 13 H 0.111 0.889 14 C -0.165 4.165 15 C -0.247 4.247 16 S 0.106 5.894 17 C -0.205 4.205 18 C -0.109 4.109 19 C -0.167 4.167 20 C 0.068 3.932 21 F -0.119 7.119 22 C -0.137 4.137 23 C -0.065 4.065 24 H 0.082 0.918 25 H 0.217 0.783 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.130 0.870 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.866 -13.506 -2.317 14.000 hybrid contribution 0.514 2.275 0.139 2.337 sum 3.380 -11.230 -2.178 11.929 Atomic orbital electron populations 1.69986 1.07033 1.27710 1.34382 1.25700 0.94658 1.00365 0.92528 0.86410 0.79852 0.80896 0.79526 1.19192 1.20468 1.19226 1.20843 0.93712 0.89157 1.54393 0.91278 1.18247 0.87350 0.82411 0.76245 1.90641 1.13825 1.86502 1.54745 1.46323 1.08737 1.03904 1.82423 1.19101 0.96835 0.85849 0.90342 0.88947 1.21852 0.98861 0.92930 1.02838 1.23732 1.04915 1.00611 0.95451 1.85170 1.87233 1.14030 1.03002 1.21275 1.06417 0.95246 0.97532 1.20553 0.99786 0.98611 0.91945 1.20934 1.04020 0.91013 1.00763 1.17677 1.01924 0.83518 0.90042 1.91490 1.90236 1.55401 1.74734 1.22220 0.96552 1.03422 0.91507 1.20178 0.98424 0.90613 0.97240 0.91822 0.78343 0.90075 0.89211 0.88792 0.86971 0.85161 0.84812 0.81173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.10 11.83 55.55 0.66 -21.44 16 2 C 0.09 2.38 5.50 -17.37 -0.10 2.28 16 3 Si 0.91 19.66 29.56 -169.99 -5.02 14.63 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 7 C -0.54 -14.65 9.54 -35.63 -0.34 -14.99 16 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 9 C 0.55 14.58 5.86 -12.99 -0.08 14.50 16 10 O -0.57 -17.21 12.95 5.20 0.07 -17.15 16 11 N -0.76 -15.79 4.69 -57.22 -0.27 -16.06 16 12 C 0.19 3.37 2.36 -69.97 -0.17 3.21 16 13 H 0.09 1.91 7.52 -51.93 -0.39 1.52 16 14 C -0.13 -1.67 5.24 -27.02 -0.14 -1.81 16 15 C -0.10 -1.13 6.53 37.44 0.24 -0.89 16 16 S -0.14 -1.78 21.98 -107.50 -2.36 -4.14 16 17 C -0.09 -1.48 6.05 -39.10 -0.24 -1.72 16 18 C -0.09 -1.28 9.65 -39.25 -0.38 -1.65 16 19 C -0.15 -2.30 10.04 -39.66 -0.40 -2.70 16 20 C 0.09 1.74 7.28 -39.59 -0.29 1.45 16 21 F -0.14 -2.86 17.27 2.25 0.04 -2.82 16 22 C -0.12 -2.52 8.74 -39.28 -0.34 -2.86 16 23 C -0.06 -1.07 5.64 -104.56 -0.59 -1.66 16 24 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 25 H 0.38 7.06 8.57 -40.82 -0.35 6.71 16 26 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.09 1.09 8.07 -51.93 -0.42 0.68 16 29 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.13 1.57 8.05 -52.49 -0.42 1.15 16 31 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 32 H 0.17 4.41 4.06 -52.49 -0.21 4.20 16 LS Contribution 286.81 15.07 4.32 4.32 Total: -1.00 -31.60 286.81 -8.41 -40.01 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -3.03 Total: 9.48 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.81 Total: -6.84 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.39 Total: -37.50 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.07 Total: -17.15 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.36 Total: -4.14 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.60 -8.41 -40.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153511413.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.192 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds