Wall clock time and date at job start Tue Mar 31 2020 05:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00453 * 2 1 4 4 H 1.48504 * 109.46973 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.47031 * 120.00057 * 3 2 1 6 6 H 1.48501 * 109.47630 * 240.00088 * 3 2 1 7 7 C 1.37877 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00092 * 11.75397 * 7 2 1 9 9 C 1.50702 * 119.99881 * 191.76396 * 7 2 1 10 10 O 1.42896 * 112.94695 * 65.56598 * 9 7 2 11 11 C 1.53947 * 113.74074 * 293.96799 * 9 7 2 12 12 N 1.47808 * 86.03925 * 222.08659 * 11 9 7 13 13 C 1.34773 * 134.45946 * 204.64144 * 12 11 9 14 14 O 1.21561 * 120.00265 * 181.61295 * 13 12 11 15 15 C 1.47795 * 119.99916 * 1.61960 * 13 12 11 16 16 C 1.39611 * 120.12889 * 171.19624 * 15 13 12 17 17 C 1.37894 * 119.86356 * 179.78867 * 16 15 13 18 18 C 1.38515 * 120.12925 * 0.46645 * 17 16 15 19 19 Cl 1.73605 * 119.86869 * 179.76528 * 18 17 16 20 20 C 1.38509 * 120.26842 * 359.78809 * 18 17 16 21 21 C 1.37896 * 120.12962 * 359.97438 * 20 18 17 22 22 C 1.47582 * 91.05193 * 24.55195 * 12 11 9 23 23 H 0.96998 * 120.00594 * 174.86606 * 1 2 3 24 24 H 0.96698 * 113.99803 * 308.54479 * 10 9 7 25 25 H 1.09002 * 113.76810 * 336.35260 * 11 9 7 26 26 H 1.09005 * 113.76696 * 107.74734 * 11 9 7 27 27 H 1.07997 * 120.06765 * 0.02562 * 16 15 13 28 28 H 1.08001 * 119.93698 * 180.21424 * 17 16 15 29 29 H 1.07995 * 119.93823 * 179.97438 * 20 18 17 30 30 H 1.08001 * 120.06926 * 180.02562 * 21 20 18 31 31 H 1.09005 * 113.76997 * 221.15280 * 22 12 11 32 32 H 1.08999 * 113.76894 * 89.75442 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6962 1.2126 6 1 3.1030 1.6964 -1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 1.4814 -2.1195 -0.1915 9 6 3.4877 -1.2079 0.2655 10 8 3.8196 -0.7943 1.5925 11 6 4.3199 -0.5124 -0.8270 12 7 5.2603 -1.6442 -0.6874 13 6 6.5744 -1.8153 -0.9325 14 8 7.0919 -2.8989 -0.7436 15 6 7.3864 -0.6854 -1.4309 16 6 8.7753 -0.8025 -1.5115 17 6 9.5272 0.2536 -1.9814 18 6 8.9080 1.4322 -2.3638 19 17 9.8618 2.7596 -2.9487 20 6 7.5310 1.5561 -2.2811 21 6 6.7680 0.5051 -1.8174 22 6 4.1834 -2.5105 -0.1699 23 1 -0.4851 -0.8366 -0.0752 24 1 3.4214 0.0475 1.8531 25 1 3.8241 -0.4702 -1.7968 26 1 4.7360 0.4467 -0.5185 27 1 9.2594 -1.7196 -1.2101 28 1 10.6014 0.1631 -2.0476 29 1 7.0538 2.4775 -2.5803 30 1 5.6943 0.6027 -1.7536 31 1 4.4907 -3.1438 0.6624 32 1 3.6475 -3.0565 -0.9462 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186823473.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:58 Heat of formation + Delta-G solvation = -34.637181 kcal Electronic energy + Delta-G solvation = -19512.167835 eV Core-core repulsion = 16271.634437 eV Total energy + Delta-G solvation = -3240.533398 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.78421 -40.17736 -38.97427 -37.46118 -36.09835 -34.65277 -32.59425 -32.13853 -30.28666 -27.62891 -26.97569 -24.43552 -23.75051 -21.79993 -20.70302 -19.94698 -18.60522 -18.25790 -17.35689 -17.21221 -16.70342 -16.07218 -15.88377 -15.54409 -15.20856 -14.84310 -14.68283 -14.36777 -14.31571 -14.13747 -13.84494 -13.31150 -12.97805 -12.57332 -12.53704 -12.41466 -12.18014 -11.87602 -11.77421 -11.33530 -11.14691 -10.88518 -10.34704 -10.20155 -9.99463 -9.69480 -8.82631 -6.60433 -0.45482 0.16554 0.98624 1.42409 1.48144 1.59245 1.62815 1.77292 2.43846 2.62155 2.90901 3.14982 3.46139 3.61939 3.70862 3.78538 4.10182 4.16687 4.23360 4.31001 4.44283 4.51439 4.57355 4.66662 4.85619 4.94479 5.00339 5.05017 5.22998 5.56072 5.58008 5.91397 6.39888 6.59056 6.92073 6.94431 7.26747 8.52980 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.020783 B = 0.005392 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.953972 B = 5191.863399 C = 6271.881530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 1.063 2.937 4 H -0.287 1.287 5 H -0.246 1.246 6 H -0.227 1.227 7 C -0.622 4.622 8 H 0.033 0.967 9 C 0.192 3.808 10 O -0.573 6.573 11 C 0.061 3.939 12 N -0.626 5.626 13 C 0.567 3.433 14 O -0.587 6.587 15 C -0.140 4.140 16 C -0.055 4.055 17 C -0.111 4.111 18 C -0.014 4.014 19 Cl -0.053 7.053 20 C -0.114 4.114 21 C -0.093 4.093 22 C 0.124 3.876 23 H 0.258 0.742 24 H 0.375 0.625 25 H 0.111 0.889 26 H 0.099 0.901 27 H 0.143 0.857 28 H 0.166 0.834 29 H 0.165 0.835 30 H 0.151 0.849 31 H 0.068 0.932 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.184 7.955 -6.112 19.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.208 4.208 3 Si 0.881 3.119 4 H -0.213 1.213 5 H -0.171 1.171 6 H -0.150 1.150 7 C -0.660 4.660 8 H 0.052 0.948 9 C 0.151 3.849 10 O -0.383 6.383 11 C -0.060 4.060 12 N -0.359 5.359 13 C 0.360 3.640 14 O -0.470 6.470 15 C -0.143 4.143 16 C -0.074 4.074 17 C -0.129 4.129 18 C -0.041 4.041 19 Cl -0.024 7.024 20 C -0.132 4.132 21 C -0.111 4.111 22 C 0.002 3.998 23 H 0.067 0.933 24 H 0.226 0.774 25 H 0.129 0.871 26 H 0.117 0.883 27 H 0.161 0.839 28 H 0.184 0.816 29 H 0.182 0.818 30 H 0.168 0.832 31 H 0.086 0.914 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 17.859 8.533 -6.051 20.697 hybrid contribution -0.891 -1.795 0.031 2.004 sum 16.968 6.738 -6.020 19.224 Atomic orbital electron populations 1.70944 1.08234 1.30542 1.45784 1.27327 0.96114 1.06197 0.91124 0.83997 0.75587 0.71543 0.80727 1.21347 1.17085 1.14985 1.22299 0.93303 0.95363 1.54997 0.94829 1.20374 0.91973 0.92005 0.80571 1.86368 1.75610 1.44117 1.32188 1.24818 0.87638 0.91259 1.02327 1.50001 1.06070 1.16948 1.62844 1.18408 0.80577 0.88057 0.76991 1.90700 1.71881 1.28461 1.55994 1.19984 0.94869 0.94382 1.05068 1.21301 0.91468 0.99401 0.95271 1.21245 1.01954 0.90722 0.99021 1.21337 0.92322 0.90413 1.00049 1.98390 1.71589 1.45783 1.86612 1.21294 0.91707 1.00345 0.99861 1.22076 1.02079 0.91395 0.95571 1.23261 0.84072 0.95079 0.97394 0.93272 0.77398 0.87079 0.88319 0.83897 0.81625 0.81791 0.83162 0.91370 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.96 13.70 21.45 0.29 -51.67 16 2 C -0.01 -0.34 5.44 84.66 0.46 0.12 16 3 Si 1.06 39.68 24.65 68.60 1.69 41.37 16 4 H -0.29 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.25 -7.91 5.75 99.48 0.57 -7.33 16 6 H -0.23 -6.79 6.39 99.48 0.64 -6.16 16 7 C -0.62 -31.43 9.04 25.60 0.23 -31.20 16 8 H 0.03 1.89 8.05 -2.91 -0.02 1.87 16 9 C 0.19 8.23 1.07 -10.88 -0.01 8.22 16 10 O -0.57 -24.85 13.46 -148.98 -2.01 -26.86 16 11 C 0.06 2.18 3.26 86.44 0.28 2.46 16 12 N -0.63 -23.92 3.61 -843.05 -3.04 -26.97 16 13 C 0.57 21.47 7.98 86.77 0.69 22.16 16 14 O -0.59 -25.63 17.11 -3.91 -0.07 -25.70 16 15 C -0.14 -4.16 5.87 -20.09 -0.12 -4.28 16 16 C -0.06 -1.37 9.59 22.52 0.22 -1.15 16 17 C -0.11 -2.12 9.81 22.25 0.22 -1.90 16 18 C -0.01 -0.27 6.33 22.40 0.14 -0.13 16 19 Cl -0.05 -0.86 28.95 -2.72 -0.08 -0.94 16 20 C -0.11 -2.26 9.81 22.25 0.22 -2.04 16 21 C -0.09 -2.33 9.08 22.52 0.20 -2.12 16 22 C 0.12 5.11 8.23 86.49 0.71 5.82 16 23 H 0.26 14.92 8.72 -92.71 -0.81 14.11 16 24 H 0.38 14.67 5.85 -74.06 -0.43 14.23 16 25 H 0.11 3.71 8.08 -2.39 -0.02 3.70 16 26 H 0.10 3.03 5.08 -2.38 -0.01 3.02 16 27 H 0.14 3.52 7.68 -2.91 -0.02 3.50 16 28 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 29 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 30 H 0.15 3.74 3.90 -2.91 -0.01 3.73 16 31 H 0.07 2.88 8.14 -2.38 -0.02 2.86 16 32 H 0.10 3.91 8.09 -2.39 -0.02 3.89 16 Total: -1.00 -63.97 285.95 0.54 -63.43 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.50 Total: 31.36 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 3.25 Total: -4.04 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -2.75 Total: -78.63 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -2.07 Total: -52.55 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 1.69 Total: 41.37 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -63.97 0.54 -63.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186823473.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.794 kcal (2) G-P(sol) polarization free energy of solvation -63.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds