Wall clock time and date at job start Tue Mar 31 2020 05:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 119.99658 * 90.00442 * 3 2 1 5 5 C 1.50701 * 109.47310 * 89.99973 * 4 3 2 6 6 H 1.07997 * 119.99940 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00037 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99860 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99877 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47306 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46804 * 120.00246 * 9 7 5 12 12 H 1.48498 * 109.47100 * 239.99886 * 9 7 5 13 13 C 1.38320 * 120.00444 * 270.00084 * 3 2 1 14 14 N 1.31630 * 127.49834 * 359.71269 * 13 3 2 15 15 C 1.31289 * 116.79282 * 179.78366 * 14 13 3 16 16 C 1.50693 * 121.06472 * 180.25559 * 15 14 13 17 17 F 1.39905 * 109.46875 * 195.26640 * 16 15 14 18 18 F 1.39898 * 109.47316 * 315.26470 * 16 15 14 19 19 F 1.39902 * 109.47430 * 75.26785 * 16 15 14 20 20 N 1.30132 * 117.86943 * 0.53967 * 15 14 13 21 21 S 1.69944 * 105.76663 * 359.71293 * 20 15 14 22 22 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 27 27 H 1.08998 * 109.46888 * 209.99779 * 4 3 2 28 28 H 1.08994 * 109.47490 * 329.99842 * 4 3 2 29 29 H 0.97000 * 119.99433 * 179.97438 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2303 1.0961 7 6 4.1494 2.3904 2.8775 8 7 3.3496 3.1272 3.6172 9 14 5.9134 2.0963 3.4170 10 1 6.6008 1.2405 2.4169 11 1 6.6215 3.3973 3.5246 12 1 5.9205 1.4182 4.7380 13 6 2.2488 2.0334 -1.1978 14 7 2.0858 1.5568 -2.4140 15 6 2.3659 2.3660 -3.4092 16 6 2.2083 1.9218 -4.8405 17 9 2.8845 2.8116 -5.6820 18 9 2.7437 0.6383 -4.9921 19 9 0.8503 1.9032 -5.1762 20 7 2.7893 3.5620 -3.1200 21 16 2.8186 3.6437 -1.4228 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.0955 3.1410 1.1385 28 1 1.5818 1.6876 2.0284 29 1 3.6757 3.5176 4.4431 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228769549.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:49 Heat of formation + Delta-G solvation = -96.195394 kcal Electronic energy + Delta-G solvation = -19880.138078 eV Core-core repulsion = 16129.415032 eV Total energy + Delta-G solvation = -3750.723046 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.08045 -47.60165 -47.57083 -39.85963 -37.15642 -33.14184 -31.87234 -30.49701 -28.15187 -27.08252 -24.10678 -23.52211 -21.60977 -19.74563 -18.97040 -18.50892 -17.94157 -17.23415 -16.86554 -16.23487 -15.25375 -14.97286 -14.40857 -14.36783 -14.20007 -13.99107 -13.71924 -13.69889 -13.46402 -13.20494 -12.89728 -12.39639 -12.05504 -11.82739 -11.39843 -11.33189 -11.08866 -10.94472 -10.76231 -10.71275 -10.36600 -9.84269 -9.35921 -9.19839 -8.77693 -7.48975 -6.38155 -4.49263 0.94915 1.34792 1.74397 2.61818 2.65298 3.12268 3.20981 3.22239 3.28815 3.75824 4.18686 4.23705 4.41815 4.94495 5.11738 5.33126 5.50043 5.67682 5.76398 6.03318 6.07346 6.40473 6.46448 6.78506 7.11836 7.51171 7.56067 7.71887 7.88466 8.57254 9.20180 10.67683 Molecular weight = 281.05amu Principal moments of inertia in cm(-1) A = 0.023310 B = 0.005375 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.917917 B = 5208.074408 C = 5719.762851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.117 3.883 3 N -0.516 5.516 4 C 0.241 3.759 5 C -0.549 4.549 6 H 0.066 0.934 7 C 0.070 3.930 8 N -0.886 5.886 9 Si 0.902 3.098 10 H -0.271 1.271 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.355 3.645 14 N -0.585 5.585 15 C 0.225 3.775 16 C 0.567 3.433 17 F -0.160 7.160 18 F -0.161 7.161 19 F -0.166 7.166 20 N -0.497 5.497 21 S 0.257 5.743 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 -3.225 -9.200 10.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.008 4.008 3 N -0.228 5.228 4 C 0.123 3.877 5 C -0.588 4.588 6 H 0.084 0.916 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.729 3.271 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.022 4.022 14 N -0.325 5.325 15 C -0.070 4.070 16 C 0.507 3.493 17 F -0.141 7.141 18 F -0.142 7.142 19 F -0.147 7.147 20 N -0.334 5.334 21 S 0.395 5.605 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.703 -2.040 -8.911 9.863 hybrid contribution 0.591 -1.100 0.082 1.251 sum -3.112 -3.140 -8.829 9.874 Atomic orbital electron populations 1.22147 0.95927 1.01977 1.02339 1.21610 0.94088 0.81369 1.03702 1.47155 1.60851 1.13257 1.01565 1.19842 0.98183 0.92688 0.77023 1.21415 0.95998 1.33796 1.07553 0.91563 1.24924 0.98407 0.94243 0.95838 1.69914 1.35898 1.32240 1.14268 0.86362 0.83670 0.78420 0.78661 1.19498 1.20489 1.20625 1.25065 0.92367 0.95487 0.89237 1.67001 1.34124 1.35068 0.96296 1.22392 1.01058 0.88698 0.94853 1.16766 0.74351 0.75021 0.83130 1.93237 1.80042 1.68298 1.72573 1.93236 1.85984 1.39036 1.95969 1.93230 1.32214 1.96222 1.93054 1.77146 1.28979 1.19931 1.07388 1.85334 1.63001 1.12424 0.99734 0.92240 0.92539 0.91626 0.89178 0.90182 0.94000 0.92646 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 15 2 C 0.12 1.86 6.30 -4.04 -0.03 1.83 15 3 N -0.52 -9.87 2.55 -176.55 -0.45 -10.32 15 4 C 0.24 5.26 5.20 -5.19 -0.03 5.23 15 5 C -0.55 -13.36 9.39 -34.44 -0.32 -13.68 15 6 H 0.07 1.65 7.81 -52.49 -0.41 1.24 15 7 C 0.07 1.76 5.46 -17.82 -0.10 1.66 15 8 N -0.89 -23.07 13.29 55.43 0.74 -22.33 15 9 Si 0.90 19.68 29.54 -169.99 -5.02 14.66 15 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 13 C 0.36 6.92 7.94 -86.35 -0.69 6.23 15 14 N -0.58 -11.13 9.98 -14.58 -0.15 -11.27 15 15 C 0.22 4.13 6.98 -159.04 -1.11 3.02 15 16 C 0.57 9.04 3.53 36.00 0.13 9.17 15 17 F -0.16 -2.47 16.96 2.25 0.04 -2.43 15 18 F -0.16 -2.50 17.24 2.25 0.04 -2.46 15 19 F -0.17 -2.51 17.30 2.25 0.04 -2.47 15 20 N -0.50 -9.45 11.73 29.54 0.35 -9.11 15 21 S 0.26 4.90 22.61 -107.50 -2.43 2.47 15 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.06 0.82 8.14 -51.93 -0.42 0.39 15 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.09 1.39 8.07 -51.93 -0.42 0.97 15 26 H 0.08 1.26 7.73 -51.93 -0.40 0.86 15 27 H 0.04 0.96 7.23 -51.93 -0.38 0.59 15 28 H 0.06 1.23 8.07 -51.93 -0.42 0.81 15 29 H 0.27 6.65 8.31 -40.82 -0.34 6.31 15 LS Contribution 289.20 15.07 4.36 4.36 Total: -1.00 -25.63 289.20 -6.68 -32.31 By element: Atomic # 1 Polarization: -2.56 SS G_CDS: -2.43 Total: -4.99 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -1.76 Total: 11.60 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.49 Total: -53.03 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 0.12 Total: -7.37 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -2.43 Total: 2.47 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -25.63 -6.68 -32.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228769549.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.888 kcal (2) G-P(sol) polarization free energy of solvation -25.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds