Wall clock time and date at job start Tue Mar 31 2020 05:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47316 * 2 1 4 4 C 1.50697 * 109.47142 * 239.99693 * 2 1 3 5 5 H 1.08003 * 119.99899 * 239.99799 * 4 2 1 6 6 C 1.37870 * 120.00344 * 60.00320 * 4 2 1 7 7 N 1.31524 * 119.99879 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00250 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47263 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47208 * 120.00172 * 8 6 4 11 11 H 1.48505 * 109.47153 * 239.99738 * 8 6 4 12 12 N 1.46499 * 109.46973 * 119.99717 * 2 1 3 13 13 C 1.46499 * 120.00096 * 59.99827 * 12 2 1 14 14 C 1.38314 * 120.00015 * 240.00484 * 12 2 1 15 15 N 1.31633 * 127.50472 * 180.02562 * 14 12 2 16 16 C 1.31294 * 116.79361 * 179.97438 * 15 14 12 17 17 C 1.50699 * 121.06019 * 179.97438 * 16 15 14 18 18 F 1.39901 * 109.46833 * 105.00138 * 17 16 15 19 19 F 1.39893 * 109.47191 * 224.99719 * 17 16 15 20 20 F 1.39894 * 109.47435 * 345.00233 * 17 16 15 21 21 N 1.30121 * 117.87718 * 359.97438 * 16 15 14 22 22 S 1.69959 * 105.76318 * 359.97438 * 21 16 15 23 23 H 1.09000 * 109.46735 * 60.00249 * 1 2 3 24 24 H 1.08999 * 109.46861 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47275 * 300.00484 * 1 2 3 26 26 H 0.96999 * 119.99787 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47326 * 269.99924 * 13 12 2 28 28 H 1.08997 * 109.46909 * 30.00381 * 13 12 2 29 29 H 1.09002 * 109.46883 * 150.00222 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3227 -1.1198 -4.0078 9 1 3.1485 -2.2859 -3.6036 10 1 1.1680 -1.5868 -4.8164 11 1 3.1474 -0.1860 -4.8160 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.8134 -0.0183 2.1067 15 7 3.3298 -0.4903 3.2217 16 6 4.0588 0.3379 3.9334 17 6 4.6954 -0.1013 5.2268 18 9 6.0670 -0.2941 5.0295 19 9 4.4983 0.8827 6.2013 20 9 4.1122 -1.3004 5.6501 21 7 4.2141 1.5499 3.4863 22 16 3.3456 1.6186 2.0270 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7089 1.1611 -3.4845 27 1 0.7375 -2.1442 1.9995 28 1 1.5295 -2.5968 0.4710 29 1 2.4628 -2.5817 1.9866 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228769719.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:36 Heat of formation + Delta-G solvation = -90.249281 kcal Electronic energy + Delta-G solvation = -19901.562256 eV Core-core repulsion = 16151.097053 eV Total energy + Delta-G solvation = -3750.465203 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.10356 -47.63775 -47.57662 -39.88655 -37.28170 -33.47399 -31.59191 -29.49890 -28.09441 -26.78010 -25.57629 -23.24706 -21.02021 -20.00629 -18.95408 -18.53602 -17.93397 -17.29266 -16.69394 -16.30138 -15.19628 -15.08526 -14.42808 -14.36118 -14.01388 -13.96943 -13.73223 -13.71763 -13.51305 -12.99402 -12.92976 -12.03042 -11.77105 -11.55986 -11.37117 -11.31214 -11.16985 -11.00351 -10.74963 -10.48251 -10.41571 -9.60070 -9.39661 -9.23141 -8.78246 -7.45036 -6.41179 -4.53107 0.89747 1.27617 1.67444 2.57229 2.61607 3.09121 3.17469 3.19514 3.26221 3.74484 4.14443 4.22205 4.38710 4.90572 5.15651 5.60311 5.79820 5.87045 6.14634 6.28513 6.46117 6.53786 6.83718 7.01681 7.34435 7.47472 7.63530 7.82772 7.89235 8.51235 9.16182 10.63326 Molecular weight = 281.05amu Principal moments of inertia in cm(-1) A = 0.030926 B = 0.004735 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.168300 B = 5911.403145 C = 5991.266182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.262 3.738 3 H 0.053 0.947 4 C -0.539 4.539 5 H 0.069 0.931 6 C 0.071 3.929 7 N -0.882 5.882 8 Si 0.906 3.094 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.511 5.511 13 C 0.093 3.907 14 C 0.353 3.647 15 N -0.585 5.585 16 C 0.228 3.772 17 C 0.567 3.433 18 F -0.165 7.165 19 F -0.163 7.163 20 F -0.156 7.156 21 N -0.495 5.495 22 S 0.236 5.764 23 H 0.103 0.897 24 H 0.040 0.960 25 H 0.018 0.982 26 H 0.269 0.731 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.179 -1.940 8.961 9.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.162 3.838 3 H 0.071 0.929 4 C -0.578 4.578 5 H 0.087 0.913 6 C -0.133 4.133 7 N -0.519 5.519 8 Si 0.733 3.267 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.223 5.223 13 C -0.052 4.052 14 C -0.025 4.025 15 N -0.325 5.325 16 C -0.066 4.066 17 C 0.507 3.493 18 F -0.147 7.147 19 F -0.145 7.145 20 F -0.137 7.137 21 N -0.332 5.332 22 S 0.374 5.626 23 H 0.122 0.878 24 H 0.059 0.941 25 H 0.037 0.963 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.302 -0.737 8.541 8.876 hybrid contribution 0.231 -1.418 -0.374 1.485 sum 2.533 -2.155 8.167 8.819 Atomic orbital electron populations 1.22156 0.96431 1.00710 1.01670 1.19455 0.92358 0.92835 0.79121 0.92904 1.21249 1.33165 1.13994 0.89390 0.91328 1.24888 0.94386 0.94844 0.99198 1.69850 1.35335 1.22196 1.24544 0.86306 0.78777 0.79661 0.81992 1.19545 1.20604 1.20577 1.47273 1.44174 1.11667 1.19157 1.21783 1.00242 0.80361 1.02789 1.25174 0.92036 0.95441 0.89834 1.67036 1.21977 1.35062 1.08409 1.22415 0.98550 0.88121 0.97561 1.16757 0.75960 0.75085 0.81489 1.93238 1.31411 1.94983 1.95052 1.93232 1.94803 1.62250 1.64178 1.93240 1.83986 1.46003 1.90520 1.77149 1.26703 1.19630 1.09689 1.85193 1.45240 1.10782 1.21382 0.87843 0.94063 0.96308 0.92112 0.92831 0.89212 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.97 37.16 0.33 -2.76 15 2 C 0.26 5.66 2.69 -69.08 -0.19 5.47 15 3 H 0.05 1.22 6.57 -51.93 -0.34 0.88 15 4 C -0.54 -12.75 7.99 -34.44 -0.28 -13.03 15 5 H 0.07 1.63 7.33 -52.48 -0.38 1.25 15 6 C 0.07 1.72 5.30 -17.82 -0.09 1.62 15 7 N -0.88 -21.94 11.32 55.43 0.63 -21.31 15 8 Si 0.91 19.08 29.54 -169.99 -5.02 14.06 15 9 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 10 H -0.28 -5.87 7.11 56.52 0.40 -5.47 15 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 12 N -0.51 -9.94 2.85 -176.75 -0.50 -10.44 15 13 C 0.09 1.53 9.60 59.85 0.57 2.11 15 14 C 0.35 6.85 7.95 -86.36 -0.69 6.16 15 15 N -0.58 -11.15 9.64 -14.58 -0.14 -11.29 15 16 C 0.23 4.16 6.97 -159.04 -1.11 3.05 15 17 C 0.57 8.96 3.53 36.01 0.13 9.09 15 18 F -0.17 -2.53 17.30 2.25 0.04 -2.50 15 19 F -0.16 -2.46 17.24 2.25 0.04 -2.43 15 20 F -0.16 -2.40 16.97 2.25 0.04 -2.36 15 21 N -0.49 -9.27 12.08 29.54 0.36 -8.91 15 22 S 0.24 4.39 22.28 -107.50 -2.40 1.99 15 23 H 0.10 2.34 6.07 -51.93 -0.32 2.03 15 24 H 0.04 0.79 7.67 -51.93 -0.40 0.40 15 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 15 26 H 0.27 6.38 8.31 -40.82 -0.34 6.04 15 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 28 H 0.09 1.48 7.02 -51.93 -0.36 1.11 15 29 H 0.07 1.12 7.73 -51.93 -0.40 0.72 15 LS Contribution 280.52 15.07 4.23 4.23 Total: -1.00 -24.61 280.52 -6.23 -30.85 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: -2.19 Total: -3.61 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -1.32 Total: 11.72 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.34 Total: -51.95 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 0.12 Total: -7.28 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -2.40 Total: 1.99 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -24.61 -6.23 -30.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228769719.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.403 kcal (2) G-P(sol) polarization free energy of solvation -24.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds