Wall clock time and date at job start Tue Mar 31 2020 05:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99709 * 2 1 4 4 H 1.48501 * 109.46882 * 239.99971 * 3 2 1 5 5 H 1.48496 * 109.47145 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46593 * 120.00163 * 3 2 1 7 7 C 1.37874 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99853 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00469 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47294 * 180.02562 * 9 7 2 11 11 O 1.42899 * 109.47049 * 180.02562 * 10 9 7 12 12 C 1.34916 * 117.00105 * 180.02562 * 11 10 9 13 13 O 1.21628 * 120.00040 * 359.97438 * 12 11 10 14 14 C 1.46195 * 119.99943 * 180.02562 * 12 11 10 15 15 C 1.34952 * 119.99639 * 173.28243 * 14 12 11 16 16 C 1.47123 * 120.00226 * 348.75706 * 15 14 12 17 17 C 1.40341 * 120.57379 * 132.10815 * 16 15 14 18 18 C 1.38191 * 118.28521 * 179.77671 * 17 16 15 19 19 C 1.38594 * 119.32265 * 0.50626 * 18 17 16 20 20 Cl 1.73603 * 119.44642 * 179.75415 * 19 18 17 21 21 N 1.32053 * 121.11045 * 359.47319 * 19 18 17 22 22 C 1.31661 * 121.88836 * 0.25924 * 21 19 18 23 23 H 0.97000 * 120.00272 * 359.97438 * 1 2 3 24 24 H 1.09008 * 109.46369 * 60.00132 * 9 7 2 25 25 H 1.09004 * 109.47551 * 300.00841 * 9 7 2 26 26 H 1.08994 * 109.47359 * 60.00723 * 10 9 7 27 27 H 1.09000 * 109.47243 * 300.00421 * 10 9 7 28 28 H 1.08001 * 119.99840 * 353.27151 * 14 12 11 29 29 H 1.08002 * 120.00048 * 168.76218 * 15 14 12 30 30 H 1.08001 * 120.86028 * 0.03853 * 17 16 15 31 31 H 1.07997 * 120.34122 * 180.24175 * 18 17 16 32 32 H 1.07999 * 119.73168 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5309 -4.8996 -0.0011 12 6 2.2657 -6.0311 -0.0007 13 8 3.4803 -5.9674 -0.0003 14 6 1.6019 -7.3337 -0.0018 15 6 2.3300 -8.4618 -0.1381 16 6 3.7455 -8.3808 -0.5308 17 6 4.7237 -9.1008 0.1723 18 6 6.0383 -8.9939 -0.2400 19 6 6.3476 -8.1787 -1.3174 20 17 7.9988 -8.0370 -1.8341 21 7 5.4066 -7.5123 -1.9610 22 6 4.1395 -7.5849 -1.6107 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6246 -2.5572 0.8896 26 1 2.8719 -3.6044 0.8895 27 1 2.8721 -3.6043 -0.8905 28 1 0.5290 -7.3931 0.1066 29 1 1.8735 -9.4240 0.0411 30 1 4.4555 -9.7258 1.0113 31 1 6.8174 -9.5365 0.2747 32 1 3.3985 -7.0246 -2.1615 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255476739.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:47 Heat of formation + Delta-G solvation = -42.800076 kcal Electronic energy + Delta-G solvation = -18498.177394 eV Core-core repulsion = 15257.290025 eV Total energy + Delta-G solvation = -3240.887368 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.68348 -39.72204 -36.94075 -36.42498 -34.39446 -33.34235 -32.51582 -30.57856 -29.82365 -25.75985 -24.44249 -23.83550 -22.55396 -20.89073 -19.67216 -17.95725 -17.49130 -16.83673 -16.38440 -15.98317 -15.91812 -14.82560 -14.75265 -14.46887 -14.04631 -13.83238 -13.49626 -13.23850 -12.70810 -12.37240 -12.23692 -11.80381 -11.47074 -11.27802 -11.06588 -10.75695 -10.72356 -10.44939 -10.36237 -9.99387 -9.70625 -9.61732 -9.55238 -9.32232 -8.54051 -8.43953 -6.10354 -4.14685 0.24969 1.04377 1.30504 1.67942 3.05104 3.19895 3.30806 3.34586 3.39227 3.51439 4.22118 4.39097 4.39587 4.57821 4.69197 4.88329 5.03087 5.21300 5.26230 5.42792 5.52798 5.67382 5.91473 5.95860 6.07754 6.09013 6.29515 6.63389 6.93101 7.54058 7.59980 7.61134 7.85739 8.14373 8.25144 8.90578 9.49810 11.01137 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.003548 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.916315 B = 7889.446828 C = 9066.516844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.073 3.927 11 O -0.344 6.344 12 C 0.476 3.524 13 O -0.509 6.509 14 C -0.163 4.163 15 C -0.030 4.030 16 C -0.114 4.114 17 C -0.048 4.048 18 C -0.162 4.162 19 C 0.180 3.820 20 Cl -0.038 7.038 21 N -0.479 5.479 22 C 0.186 3.814 23 H 0.264 0.736 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.002 -22.453 -0.238 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.011 4.011 10 C 0.000 4.000 11 O -0.260 6.260 12 C 0.322 3.678 13 O -0.400 6.400 14 C -0.182 4.182 15 C -0.049 4.049 16 C -0.116 4.116 17 C -0.073 4.073 18 C -0.183 4.183 19 C 0.017 3.983 20 Cl -0.010 7.010 21 N -0.189 5.189 22 C 0.027 3.973 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.170 0.830 29 H 0.168 0.832 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.604 -21.704 -0.990 23.019 hybrid contribution 0.440 0.665 0.732 1.083 sum 8.044 -21.039 -0.258 22.526 Atomic orbital electron populations 1.69961 1.06088 1.27109 1.49759 1.24974 0.94912 0.99368 0.94829 0.86534 0.79499 0.82471 0.78827 1.20022 1.21093 1.20074 1.20952 0.93152 0.90167 1.52263 0.92337 1.19162 0.94089 0.89026 0.98820 1.23257 0.96611 0.79297 1.00848 1.86233 1.41951 1.15573 1.82235 1.21433 0.86045 0.86466 0.73846 1.90908 1.15023 1.88261 1.45780 1.22588 1.01389 0.89258 1.04981 1.22288 0.91241 0.98401 0.92994 1.20015 0.94494 0.99087 0.98039 1.21577 0.91425 0.96481 0.97864 1.21630 0.97846 1.01268 0.97569 1.21712 0.87912 0.95440 0.93218 1.98399 1.14676 1.96990 1.90914 1.66907 1.01026 1.20515 1.30501 1.22699 0.91016 0.90987 0.92570 0.92650 0.95349 0.95410 0.92595 0.92477 0.83048 0.83165 0.83723 0.83811 0.82602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.03 0.69 5.34 -27.89 -0.15 0.54 16 10 C 0.07 1.63 5.31 37.15 0.20 1.82 16 11 O -0.34 -6.69 10.12 -41.08 -0.42 -7.11 16 12 C 0.48 7.75 7.09 33.93 0.24 8.00 16 13 O -0.51 -9.39 12.23 -19.36 -0.24 -9.63 16 14 C -0.16 -1.75 10.06 -37.56 -0.38 -2.13 16 15 C -0.03 -0.26 9.81 -37.14 -0.36 -0.62 16 16 C -0.11 -1.27 4.36 -104.91 -0.46 -1.72 16 17 C -0.05 -0.45 9.94 -38.81 -0.39 -0.84 16 18 C -0.16 -1.67 9.86 -39.47 -0.39 -2.06 16 19 C 0.18 2.36 7.27 -17.33 -0.13 2.23 16 20 Cl -0.04 -0.45 29.10 -51.86 -1.51 -1.96 16 21 N -0.48 -7.26 10.32 -9.93 -0.10 -7.36 16 22 C 0.19 2.56 7.96 -17.04 -0.14 2.42 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.03 0.78 8.14 -51.92 -0.42 0.35 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 27 H 0.06 1.28 8.13 -51.93 -0.42 0.85 16 28 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 29 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 30 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.16 2.09 7.44 -52.49 -0.39 1.70 16 LS Contribution 305.76 15.07 4.61 4.61 Total: -1.00 -33.07 305.76 -7.61 -40.69 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -3.31 Total: -4.08 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -2.36 Total: -6.00 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.63 Total: -33.10 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.65 Total: -16.73 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.51 Total: -1.96 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.07 -7.61 -40.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255476739.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.115 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds