Wall clock time and date at job start Tue Mar 31 2020 05:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46497 * 120.00093 * 2 1 4 4 C 1.50700 * 109.47194 * 270.00132 * 3 2 1 5 5 H 1.07993 * 119.99813 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99905 * 180.02562 * 4 3 2 7 7 N 1.31521 * 120.00191 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00008 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.46911 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46986 * 119.99818 * 8 6 4 11 11 H 1.48500 * 109.47213 * 239.99515 * 8 6 4 12 12 C 1.34780 * 119.99764 * 180.02562 * 2 1 3 13 13 O 1.21366 * 119.99882 * 185.00952 * 12 2 1 14 14 C 1.49288 * 120.00090 * 5.01564 * 12 2 1 15 15 O 1.21366 * 119.99783 * 275.22668 * 14 12 2 16 16 C 1.47314 * 120.00286 * 95.22084 * 14 12 2 17 17 C 1.39962 * 120.15934 * 174.84103 * 16 14 12 18 18 C 1.37774 * 119.83282 * 180.27727 * 17 16 14 19 19 C 1.38618 * 120.16418 * 359.49867 * 18 17 16 20 20 Cl 1.73595 * 119.83915 * 180.23425 * 19 18 17 21 21 C 1.38619 * 120.32095 * 0.50834 * 19 18 17 22 22 C 1.37772 * 120.16159 * 359.74396 * 21 19 18 23 23 H 1.08996 * 109.46718 * 264.83268 * 1 2 3 24 24 H 1.09004 * 109.46774 * 24.82571 * 1 2 3 25 25 H 1.08994 * 109.47152 * 144.82564 * 1 2 3 26 26 H 1.09004 * 109.47271 * 30.00671 * 3 2 1 27 27 H 1.09007 * 109.47037 * 149.99838 * 3 2 1 28 28 H 0.96999 * 120.00231 * 179.97438 * 7 6 4 29 29 H 1.07997 * 120.08485 * 0.02562 * 17 16 14 30 30 H 1.08003 * 119.91392 * 179.72546 * 18 17 16 31 31 H 1.08001 * 119.91757 * 179.72879 * 21 19 18 32 32 H 1.08003 * 120.08557 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0982 1.0958 -2.2416 6 6 3.1270 2.8774 -1.6727 7 7 3.5543 3.6175 -0.6730 8 14 3.4389 3.4164 -3.4339 9 1 2.8619 2.4159 -4.3672 10 1 2.8018 4.7373 -3.6675 11 1 4.9016 3.5241 -3.6669 12 6 2.1389 -1.1673 -0.0005 13 8 3.3491 -1.1693 0.0913 14 6 1.3967 -2.4576 -0.1141 15 8 0.9330 -2.9803 0.8782 16 6 1.2270 -3.0963 -1.4307 17 6 0.6272 -4.3571 -1.5285 18 6 0.4771 -4.9508 -2.7627 19 6 0.9089 -4.2981 -3.9068 20 17 0.7101 -5.0513 -5.4581 21 6 1.5040 -3.0493 -3.8176 22 6 1.6655 -2.4455 -2.5897 23 1 -0.3632 -0.0926 1.0235 24 1 -0.3633 0.9327 -0.4315 25 1 -0.3633 -0.8400 -0.5920 26 1 1.6086 2.0284 0.5139 27 1 3.1500 1.1383 0.5139 28 1 4.0318 4.4431 -0.8503 29 1 0.2866 -4.8651 -0.6384 30 1 0.0184 -5.9256 -2.8392 31 1 1.8420 -2.5485 -4.7127 32 1 2.1296 -1.4727 -2.5216 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263851912.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:08 Heat of formation + Delta-G solvation = -45.662509 kcal Electronic energy + Delta-G solvation = -19202.592311 eV Core-core repulsion = 15961.580818 eV Total energy + Delta-G solvation = -3241.011493 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.53679 -38.91437 -37.84423 -36.66886 -35.11006 -32.71523 -31.52006 -31.24850 -28.25043 -26.51087 -25.27551 -23.43595 -22.85497 -21.44265 -18.87488 -17.67426 -16.87991 -16.65236 -16.22151 -15.93443 -15.19039 -14.79035 -14.56408 -14.17787 -14.04422 -13.74201 -13.41904 -13.28441 -12.58082 -12.42876 -12.25757 -12.04295 -11.80365 -11.67458 -11.33368 -11.09880 -11.07430 -10.99250 -10.69949 -10.27390 -9.76233 -9.33202 -9.01631 -8.94140 -8.54750 -7.90916 -6.15694 -4.22104 0.25705 1.06570 1.79606 2.03698 2.86574 3.22982 3.30683 3.31799 3.35351 3.46769 4.26169 4.40462 4.51040 4.60782 4.87384 5.01876 5.10566 5.19537 5.38022 5.48546 5.71837 5.79821 5.87497 5.95018 6.06547 6.08143 6.45138 6.80859 7.17224 7.23781 7.32196 7.78272 8.05542 8.07439 8.53579 8.82347 9.43458 10.92575 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.005406 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.863429 B = 5178.369404 C = 6557.916399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.582 5.582 3 C 0.241 3.759 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.484 3.516 13 O -0.513 6.513 14 C 0.399 3.601 15 O -0.428 6.428 16 C -0.160 4.160 17 C -0.045 4.045 18 C -0.128 4.128 19 C -0.003 4.003 20 Cl -0.066 7.066 21 C -0.121 4.121 22 C -0.042 4.042 23 H 0.053 0.947 24 H 0.086 0.914 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.265 0.735 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.780 -14.343 -5.942 17.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.315 5.315 3 C 0.122 3.878 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.266 3.734 13 O -0.389 6.389 14 C 0.272 3.728 15 O -0.300 6.300 16 C -0.162 4.162 17 C -0.064 4.064 18 C -0.147 4.147 19 C -0.030 4.030 20 Cl -0.037 7.037 21 C -0.139 4.139 22 C -0.060 4.060 23 H 0.072 0.928 24 H 0.105 0.895 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.162 0.838 30 H 0.158 0.842 31 H 0.161 0.839 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.311 -14.484 -5.437 17.562 hybrid contribution 0.173 0.388 -1.182 1.256 sum -8.138 -14.096 -6.619 17.571 Atomic orbital electron populations 1.21768 0.80653 1.03195 1.01019 1.48260 1.06666 1.07320 1.69281 1.19490 0.92892 0.77346 0.98032 1.21391 1.37164 1.06710 0.91864 0.92199 1.24933 0.95151 0.96269 0.97550 1.69938 1.37862 1.14300 1.30780 0.86438 0.78186 0.78504 0.84287 1.19670 1.20862 1.20782 1.20312 0.88464 0.85057 0.79519 1.90802 1.12640 1.86130 1.49348 1.22780 0.75178 0.86691 0.88171 1.90567 1.37361 1.63109 1.38930 1.20463 1.04466 0.96947 0.94336 1.21343 0.94179 0.93018 0.97818 1.20988 1.02124 1.00989 0.90572 1.21329 1.00266 0.94482 0.86926 1.98384 1.95866 1.81677 1.27741 1.21088 1.00044 0.93775 0.99013 1.21697 0.93678 0.99988 0.90659 0.92841 0.89523 0.92862 0.94277 0.93322 0.92560 0.83755 0.84170 0.83883 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.23 59.85 0.61 1.84 16 2 N -0.58 -12.05 2.86 -183.53 -0.52 -12.57 16 3 C 0.24 6.00 5.18 -5.20 -0.03 5.98 16 4 C -0.53 -14.07 9.39 -34.44 -0.32 -14.39 16 5 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 C 0.48 10.14 6.09 -11.66 -0.07 10.07 16 13 O -0.51 -12.69 16.65 5.48 0.09 -12.60 16 14 C 0.40 6.92 5.11 -31.30 -0.16 6.76 16 15 O -0.43 -7.65 17.11 5.48 0.09 -7.56 16 16 C -0.16 -2.32 5.88 -104.91 -0.62 -2.94 16 17 C -0.05 -0.53 9.60 -39.11 -0.38 -0.90 16 18 C -0.13 -1.30 9.81 -39.61 -0.39 -1.69 16 19 C 0.00 -0.04 6.33 -39.30 -0.25 -0.28 16 20 Cl -0.07 -0.65 28.95 -51.86 -1.50 -2.15 16 21 C -0.12 -1.45 9.81 -39.61 -0.39 -1.84 16 22 C -0.04 -0.60 9.47 -39.10 -0.37 -0.97 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.09 1.33 8.03 -51.93 -0.42 0.91 16 25 H 0.05 0.74 6.99 -51.93 -0.36 0.37 16 26 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 27 H 0.05 1.37 7.36 -51.92 -0.38 0.99 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.14 1.49 7.66 -52.49 -0.40 1.09 16 30 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 31 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.15 2.44 7.15 -52.48 -0.38 2.06 16 LS Contribution 307.70 15.07 4.64 4.64 Total: -1.00 -30.71 307.70 -7.11 -37.83 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -3.17 Total: -1.84 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -2.45 Total: 3.26 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.21 Total: -37.23 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.19 Total: -20.15 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.71 -7.11 -37.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263851912.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.836 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds