Wall clock time and date at job start Tue Mar 31 2020 05:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48509 * 109.46977 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47069 * 299.99977 * 3 2 1 6 6 H 1.48502 * 109.47309 * 60.00364 * 3 2 1 7 7 C 1.37876 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99757 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00265 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47393 * 180.02562 * 9 7 2 11 11 N 1.46493 * 109.47245 * 179.97438 * 10 9 7 12 12 C 1.34779 * 120.00437 * 179.97438 * 11 10 9 13 13 O 1.21374 * 119.99399 * 0.02562 * 12 11 10 14 14 C 1.49284 * 120.00389 * 180.02562 * 12 11 10 15 15 O 1.21362 * 119.99715 * 5.35553 * 14 12 11 16 16 C 1.47315 * 119.99957 * 185.36034 * 14 12 11 17 17 C 1.39972 * 120.15703 * 354.08805 * 16 14 12 18 18 C 1.37772 * 119.83348 * 180.25292 * 17 16 14 19 19 C 1.38627 * 120.16091 * 359.45076 * 18 17 16 20 20 Cl 1.73599 * 119.84133 * 180.27425 * 19 18 17 21 21 C 1.38618 * 120.32070 * 0.26039 * 19 18 17 22 22 C 1.37777 * 120.16382 * 0.02562 * 21 19 18 23 23 H 0.96995 * 120.00073 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46981 * 59.99741 * 9 7 2 25 25 H 1.09003 * 109.46697 * 299.99801 * 9 7 2 26 26 H 1.08997 * 109.47129 * 59.99411 * 10 9 7 27 27 H 1.09001 * 109.47126 * 300.00091 * 10 9 7 28 28 H 0.97003 * 120.00367 * 0.02562 * 11 10 9 29 29 H 1.07993 * 120.08385 * 0.02562 * 17 16 14 30 30 H 1.07994 * 119.92316 * 179.72775 * 18 17 16 31 31 H 1.08005 * 119.91845 * 180.02562 * 21 19 18 32 32 H 1.07996 * 120.08005 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5130 -4.9307 0.0001 12 6 2.1868 -6.0980 -0.0003 13 8 3.4005 -6.0979 -0.0007 14 6 1.4404 -7.3908 -0.0003 15 8 0.2308 -7.3931 -0.0980 16 6 2.1723 -8.6638 0.1185 17 6 3.5719 -8.6740 0.1070 18 6 4.2495 -9.8688 0.2132 19 6 3.5487 -11.0579 0.3427 20 17 4.4110 -12.5580 0.4831 21 6 2.1626 -11.0548 0.3608 22 6 1.4714 -9.8682 0.2497 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8902 25 1 0.6249 -2.5571 0.8897 26 1 2.8721 -3.6042 0.8894 27 1 2.8720 -3.6043 -0.8905 28 1 0.5429 -4.9308 0.0000 29 1 4.1192 -7.7480 0.0114 30 1 5.3293 -9.8788 0.2001 31 1 1.6232 -11.9850 0.4624 32 1 0.3916 -9.8673 0.2644 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272904974.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:55 Heat of formation + Delta-G solvation = -71.876199 kcal Electronic energy + Delta-G solvation = -18163.756889 eV Core-core repulsion = 14921.608686 eV Total energy + Delta-G solvation = -3242.148203 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.91767 -40.06835 -39.40554 -37.53633 -36.77325 -34.88290 -32.31206 -32.15835 -31.71839 -27.80609 -26.19131 -24.08721 -23.54677 -22.67334 -21.25236 -18.99044 -18.60989 -18.36449 -17.56470 -17.04188 -16.55786 -16.47482 -16.14233 -15.67129 -15.50181 -15.23256 -14.64035 -14.57789 -14.31421 -14.30469 -13.37333 -13.23757 -12.97018 -12.96664 -12.54863 -12.51855 -12.42320 -12.29945 -11.85854 -11.66815 -11.41701 -10.62900 -10.49125 -10.22758 -10.17252 -9.92321 -8.24351 -6.35242 -0.93022 0.22237 0.40091 0.96750 1.42129 1.42985 1.55499 1.64141 1.85101 2.41007 2.58752 3.05536 3.10980 3.53056 3.73649 3.84260 4.14166 4.19300 4.38413 4.45842 4.55569 4.81569 4.89113 4.97356 5.02340 5.09210 5.24556 5.43321 5.54583 5.62011 5.71022 5.78751 6.12583 6.32615 6.77864 6.86977 7.34578 8.87862 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.049215 B = 0.002670 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.799390 B =10482.908768 C =11021.538323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.017 3.983 10 C 0.136 3.864 11 N -0.690 5.690 12 C 0.477 3.523 13 O -0.532 6.532 14 C 0.403 3.597 15 O -0.432 6.432 16 C -0.179 4.179 17 C -0.059 4.059 18 C -0.131 4.131 19 C -0.002 4.002 20 Cl -0.055 7.055 21 C -0.126 4.126 22 C -0.041 4.041 23 H 0.265 0.735 24 H 0.007 0.993 25 H 0.008 0.992 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.414 0.586 29 H 0.169 0.831 30 H 0.157 0.843 31 H 0.166 0.834 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.755 -24.002 0.836 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.020 4.020 10 C 0.013 3.987 11 N -0.342 5.342 12 C 0.261 3.739 13 O -0.412 6.412 14 C 0.277 3.723 15 O -0.305 6.305 16 C -0.181 4.181 17 C -0.077 4.077 18 C -0.149 4.149 19 C -0.029 4.029 20 Cl -0.026 7.026 21 C -0.144 4.144 22 C -0.060 4.060 23 H 0.074 0.926 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.250 0.750 29 H 0.186 0.814 30 H 0.175 0.825 31 H 0.184 0.816 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.887 -24.003 0.796 24.727 hybrid contribution -0.246 1.031 -0.005 1.060 sum 5.641 -22.972 0.791 23.667 Atomic orbital electron populations 1.70076 1.07687 1.27965 1.51109 1.25912 0.95767 1.03281 0.94471 0.85367 0.79101 0.78652 0.77744 1.18577 1.20440 1.20412 1.21485 0.93770 0.91564 1.51320 0.91693 1.19186 0.94385 0.92008 0.96428 1.21483 0.95091 0.80822 1.01279 1.46246 1.11885 1.05827 1.70203 1.20981 0.88283 0.86173 0.78486 1.90503 1.13883 1.86911 1.49856 1.22463 0.88173 0.89394 0.72258 1.90582 1.16105 1.89622 1.34170 1.20163 0.94971 0.93018 1.09921 1.22602 0.93255 1.00482 0.91352 1.21358 1.01981 0.90031 1.01536 1.21577 0.93204 0.87898 1.00173 1.98398 1.76798 1.31551 1.95824 1.21259 0.91812 0.99704 1.01648 1.21530 1.01521 0.89937 0.92981 0.92583 0.97437 0.97408 0.91848 0.91901 0.75022 0.81418 0.82532 0.81616 0.82672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.26 13.29 21.45 0.28 -53.98 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.97 42.89 29.54 68.60 2.03 44.91 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.54 -29.48 9.11 25.60 0.23 -29.25 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 0.86 5.09 29.85 0.15 1.01 16 10 C 0.14 5.47 5.61 86.38 0.48 5.96 16 11 N -0.69 -23.72 5.55 -464.59 -2.58 -26.30 16 12 C 0.48 15.15 7.84 87.22 0.68 15.83 16 13 O -0.53 -18.18 13.42 -3.32 -0.04 -18.22 16 14 C 0.40 10.93 7.17 27.64 0.20 11.13 16 15 O -0.43 -12.47 16.50 -3.28 -0.05 -12.52 16 16 C -0.18 -4.08 5.88 -20.05 -0.12 -4.20 16 17 C -0.06 -1.29 9.30 22.58 0.21 -1.08 16 18 C -0.13 -2.30 9.81 22.25 0.22 -2.08 16 19 C 0.00 -0.03 6.33 22.45 0.14 0.12 16 20 Cl -0.05 -0.78 28.95 -2.72 -0.08 -0.86 16 21 C -0.13 -1.85 9.81 22.25 0.22 -1.63 16 22 C -0.04 -0.74 9.60 22.58 0.22 -0.52 16 23 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 24 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 25 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.41 13.44 7.95 -92.71 -0.74 12.70 16 29 H 0.17 4.19 4.84 -3.53 -0.02 4.17 16 30 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 31 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.16 2.40 7.67 -2.91 -0.02 2.37 16 Total: -1.00 -61.34 304.76 3.08 -58.26 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.43 Total: 12.73 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 3.10 Total: -4.02 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -2.29 Total: -80.28 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.10 Total: -30.75 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -61.34 3.08 -58.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272904974.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.618 kcal (2) G-P(sol) polarization free energy of solvation -61.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds