Wall clock time and date at job start Tue Mar 31 2020 05:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99479 * 2 1 4 4 H 1.48498 * 109.47363 * 240.00047 * 3 2 1 5 5 H 1.48498 * 109.47582 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.47191 * 120.00345 * 3 2 1 7 7 C 1.37872 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00211 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99948 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47377 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.47588 * 179.97438 * 10 9 7 12 12 C 1.39674 * 120.00059 * 179.97438 * 11 10 9 13 13 C 1.38928 * 120.07392 * 354.12984 * 12 11 10 14 14 C 1.38088 * 119.92475 * 180.02562 * 13 12 11 15 15 C 1.38308 * 120.07064 * 359.97438 * 14 13 12 16 16 N 1.48023 * 119.92618 * 180.02562 * 15 14 13 17 17 O 1.21802 * 119.99476 * 0.02562 * 16 15 14 18 18 O 1.21795 * 120.00548 * 180.02562 * 16 15 14 19 19 C 1.38265 * 120.15264 * 0.02562 * 15 14 13 20 20 C 1.38126 * 120.07519 * 359.72596 * 19 15 14 21 21 N 1.48021 * 120.04275 * 180.29522 * 20 19 15 22 22 O 1.21795 * 120.00379 * 142.57826 * 21 20 19 23 23 O 1.21799 * 119.99729 * 322.58208 * 21 20 19 24 24 H 0.96995 * 119.99963 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47238 * 59.99489 * 9 7 2 26 26 H 1.09004 * 109.46787 * 299.99980 * 9 7 2 27 27 H 1.09004 * 109.47011 * 299.99677 * 10 9 7 28 28 H 1.09001 * 109.47488 * 59.99477 * 10 9 7 29 29 H 0.97004 * 119.99563 * 359.97438 * 11 10 9 30 30 H 1.08002 * 120.04031 * 0.02562 * 13 12 11 31 31 H 1.07992 * 119.96348 * 179.97438 * 14 13 12 32 32 H 1.07999 * 119.96274 * 179.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 7 1.5130 -4.9308 -0.0020 12 6 2.2115 -6.1404 -0.0024 13 6 3.5953 -6.1452 -0.1253 14 6 4.2827 -7.3428 -0.1259 15 6 3.5950 -8.5366 -0.0038 16 7 4.3352 -9.8185 -0.0042 17 8 5.5484 -9.8211 -0.1116 18 8 3.7310 -10.8706 0.1028 19 6 2.2178 -8.5354 0.1187 20 6 1.5245 -7.3408 0.1252 21 7 0.0507 -7.3400 0.2629 22 8 -0.4994 -6.4719 0.9165 23 8 -0.6118 -8.2076 -0.2773 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6242 -2.5574 0.8881 27 1 2.8728 -3.6039 -0.8910 28 1 2.8715 -3.6047 0.8890 29 1 0.5430 -4.9308 -0.0020 30 1 4.1329 -5.2133 -0.2203 31 1 5.3583 -7.3473 -0.2218 32 1 1.6839 -9.4694 0.2135 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273341480.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:03 Heat of formation + Delta-G solvation = 13.686778 kcal Electronic energy + Delta-G solvation = -21044.728581 eV Core-core repulsion = 17397.874253 eV Total energy + Delta-G solvation = -3646.854328 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.58251 -42.19831 -40.02263 -37.04328 -36.72192 -36.35099 -33.59194 -32.57750 -31.55304 -29.48954 -26.99865 -26.21987 -24.94148 -23.28288 -22.35116 -21.26229 -20.23334 -19.10092 -18.68486 -18.24714 -17.93750 -17.71342 -17.59032 -16.55461 -15.98933 -15.05433 -14.98569 -14.70156 -14.41202 -13.87118 -13.65449 -12.72463 -12.48675 -11.79856 -11.73693 -11.70272 -11.64841 -11.40477 -11.30874 -11.29262 -11.22128 -11.05990 -10.87713 -10.42827 -10.21432 -9.97343 -9.61044 -8.67378 -8.35280 -6.31101 -4.38019 -0.34920 -0.29055 0.77143 0.93014 1.11128 1.37222 2.68625 2.79643 3.15063 3.21621 3.22414 3.74214 4.03796 4.11954 4.18963 4.24113 4.67830 4.87200 5.05832 5.15560 5.19793 5.45499 5.60196 5.65472 6.07965 6.13990 6.16260 6.49169 7.07547 7.20182 7.24153 7.42546 7.47275 7.62224 7.95788 8.66464 9.28750 10.79946 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023184 B = 0.003756 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.463363 B = 7453.269190 C = 8597.173785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.103 3.897 11 N -0.680 5.680 12 C 0.320 3.680 13 C -0.189 4.189 14 C 0.029 3.971 15 C -0.120 4.120 16 N 0.045 4.955 17 O -0.164 6.164 18 O -0.172 6.172 19 C 0.060 3.940 20 C -0.135 4.135 21 N 0.037 4.963 22 O -0.160 6.160 23 O -0.144 6.144 24 H 0.266 0.734 25 H 0.026 0.974 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.417 0.583 30 H 0.169 0.831 31 H 0.166 0.834 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.601 -13.256 -0.336 14.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.572 4.572 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.018 4.018 11 N -0.298 5.298 12 C 0.196 3.804 13 C -0.212 4.212 14 C 0.008 3.992 15 C -0.207 4.207 16 N 0.562 4.438 17 O -0.379 6.379 18 O -0.384 6.384 19 C 0.039 3.961 20 C -0.225 4.225 21 N 0.557 4.443 22 O -0.371 6.371 23 O -0.364 6.364 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.258 0.742 30 H 0.187 0.813 31 H 0.184 0.816 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.810 -12.192 -0.374 13.970 hybrid contribution -0.235 0.581 0.036 0.628 sum 6.575 -11.611 -0.338 13.348 Atomic orbital electron populations 1.69937 1.06169 1.27496 1.48848 1.25005 0.94924 0.99605 0.94526 0.86521 0.79517 0.82417 0.78794 1.20030 1.21038 1.19989 1.20852 0.93033 0.89967 1.53303 0.92150 1.19342 0.94037 0.90445 0.98717 1.22355 0.97243 0.80836 1.01346 1.46467 1.11229 1.03687 1.68450 1.17953 0.92223 0.84983 0.85219 1.20782 0.90457 0.99645 1.10362 1.21014 1.02242 0.88766 0.87214 1.20307 0.91193 0.84631 1.24610 1.43245 1.01068 1.02270 0.97258 1.94537 0.95680 1.93984 1.53668 1.94554 1.70141 1.19742 1.53984 1.20215 0.91910 0.98039 0.85909 1.20032 0.80663 0.94450 1.27342 1.43223 1.02555 1.00076 0.98433 1.94575 1.73097 1.31330 1.38102 1.94564 1.63850 1.31313 1.46624 0.92388 0.95615 0.95172 0.91190 0.90922 0.74224 0.81319 0.81625 0.81241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.50 13.29 55.43 0.74 -23.76 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.53 -13.15 9.11 -34.44 -0.31 -13.47 16 8 H 0.06 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 10 C 0.10 1.64 4.90 -4.04 -0.02 1.62 16 11 N -0.68 -9.76 5.51 -58.63 -0.32 -10.09 16 12 C 0.32 3.93 6.61 -83.79 -0.55 3.37 16 13 C -0.19 -1.83 9.32 -39.38 -0.37 -2.20 16 14 C 0.03 0.26 9.55 -39.61 -0.38 -0.12 16 15 C -0.12 -1.30 6.85 -79.91 -0.55 -1.85 16 16 N 0.05 0.57 4.45 33.98 0.15 0.72 16 17 O -0.16 -2.11 18.44 -29.46 -0.54 -2.65 16 18 O -0.17 -2.31 18.44 -29.46 -0.54 -2.85 16 19 C 0.06 0.67 9.17 -39.61 -0.36 0.30 16 20 C -0.13 -1.70 6.51 -79.74 -0.52 -2.22 16 21 N 0.04 0.54 4.29 34.06 0.15 0.69 16 22 O -0.16 -2.55 16.76 -29.46 -0.49 -3.04 16 23 O -0.14 -2.13 18.95 -29.46 -0.56 -2.68 16 24 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 1.02 7.73 -51.93 -0.40 0.62 16 28 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 29 H 0.42 6.46 6.09 -40.82 -0.25 6.22 16 30 H 0.17 1.37 6.73 -52.49 -0.35 1.01 16 31 H 0.17 1.10 7.60 -52.49 -0.40 0.70 16 32 H 0.17 1.72 7.56 -52.49 -0.40 1.32 16 LS Contribution 299.72 15.07 4.52 4.52 Total: -1.00 -27.73 299.72 -7.84 -35.57 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -2.61 Total: 1.77 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -3.30 Total: -12.90 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.71 Total: -32.44 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -2.14 Total: -11.23 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.73 -7.84 -35.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273341480.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.254 kcal (2) G-P(sol) polarization free energy of solvation -27.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds