Wall clock time and date at job start Tue Mar 31 2020 05:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00156 * 2 1 4 4 H 1.48495 * 109.47698 * 240.00024 * 3 2 1 5 5 H 1.48500 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46945 * 119.99800 * 3 2 1 7 7 C 1.37878 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99748 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99846 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46675 * 179.97438 * 9 7 2 11 11 S 1.81407 * 109.46831 * 179.97438 * 10 9 7 12 12 O 1.42098 * 109.46761 * 63.61803 * 11 10 9 13 13 C 1.81403 * 102.99918 * 179.97438 * 11 10 9 14 14 C 1.50701 * 109.47200 * 180.02562 * 13 11 10 15 15 O 1.21287 * 119.99646 * 0.02562 * 14 13 11 16 16 N 1.34773 * 119.99846 * 180.02562 * 14 13 11 17 17 C 1.39924 * 119.99818 * 185.27752 * 16 14 13 18 18 C 1.38873 * 120.07282 * 33.33155 * 17 16 14 19 19 C 1.38106 * 119.93058 * 179.97438 * 18 17 16 20 20 C 1.38278 * 120.07475 * 0.02562 * 19 18 17 21 21 C 1.38283 * 120.13761 * 359.95736 * 20 19 18 22 22 C 1.38106 * 120.07186 * 0.04184 * 21 20 19 23 23 H 0.96996 * 120.00241 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47361 * 60.00034 * 9 7 2 25 25 H 1.08997 * 109.47246 * 299.99769 * 9 7 2 26 26 H 1.09000 * 109.47189 * 59.99939 * 10 9 7 27 27 H 1.09001 * 109.47590 * 299.99806 * 10 9 7 28 28 H 1.09004 * 109.47239 * 60.00068 * 13 11 10 29 29 H 1.09003 * 109.47376 * 300.00768 * 13 11 10 30 30 H 0.97000 * 120.00137 * 5.27364 * 16 14 13 31 31 H 1.08005 * 120.03105 * 359.70896 * 18 17 16 32 32 H 1.08007 * 119.96089 * 179.97438 * 19 18 17 33 33 H 1.07998 * 119.93502 * 179.97438 * 20 19 18 34 34 H 1.08001 * 119.96439 * 180.02562 * 21 20 19 35 35 H 1.08003 * 120.03629 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 16 1.3381 -5.2331 -0.0034 12 8 0.5854 -5.3448 -1.2034 13 6 2.6648 -6.4703 -0.0054 14 6 2.0632 -7.8520 -0.0067 15 8 0.8581 -7.9886 -0.0068 16 7 2.8644 -8.9357 -0.0078 17 6 2.3099 -10.2155 -0.1205 18 6 1.1641 -10.4130 -0.8798 19 6 0.6196 -11.6775 -0.9895 20 6 1.2138 -12.7462 -0.3438 21 6 2.3550 -12.5529 0.4128 22 6 2.9044 -11.2910 0.5265 23 1 -0.4850 0.8400 0.0004 24 1 0.6246 -2.5563 -0.8920 25 1 0.6240 -2.5575 0.8880 26 1 2.8719 -3.6051 0.8873 27 1 2.8719 -3.6036 -0.8927 28 1 3.2817 -6.3430 0.8843 29 1 3.2805 -6.3415 -0.8956 30 1 3.8253 -8.8286 0.0695 31 1 0.6968 -9.5779 -1.3806 32 1 -0.2718 -11.8316 -1.5796 33 1 0.7859 -13.7340 -0.4308 34 1 2.8170 -13.3897 0.9156 35 1 3.7955 -11.1406 1.1179 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283803212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:42 Heat of formation + Delta-G solvation = -50.169889 kcal Electronic energy + Delta-G solvation = -18453.871486 eV Core-core repulsion = 15350.541340 eV Total energy + Delta-G solvation = -3103.330146 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.64818 -38.56018 -35.19952 -34.95396 -33.66680 -31.13129 -31.02224 -30.82535 -28.70180 -25.30979 -23.29312 -22.70310 -21.34729 -20.52020 -18.16612 -17.24765 -17.01139 -16.50785 -16.31464 -15.77998 -14.93451 -14.77796 -14.50016 -14.28626 -14.10685 -13.92465 -13.56247 -13.24460 -13.14188 -12.61993 -12.32557 -11.94373 -11.67386 -11.47503 -11.29419 -10.96518 -10.76522 -10.61696 -10.15745 -10.13737 -10.09560 -9.50515 -9.13834 -9.12991 -8.41626 -8.35183 -7.70350 -6.04347 -4.08986 1.04361 1.19819 1.78955 2.41623 2.90110 3.13999 3.30051 3.35132 3.36899 3.62579 4.21722 4.42156 4.54714 4.71216 4.74201 4.95073 5.08020 5.19478 5.30320 5.31410 5.34564 5.40619 5.80254 5.93121 6.08381 6.11895 6.12463 6.28411 6.36395 6.79952 6.82228 7.08837 7.49488 7.60907 7.88051 7.90273 8.31475 8.95510 9.55015 11.06206 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.063241 B = 0.002779 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.642468 B =10071.774298 C =10389.068924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.431 4.431 11 S 1.275 4.725 12 O -0.830 6.830 13 C -0.501 4.501 14 C 0.543 3.457 15 O -0.507 6.507 16 N -0.675 5.675 17 C 0.149 3.851 18 C -0.123 4.123 19 C -0.099 4.099 20 C -0.139 4.139 21 C -0.103 4.103 22 C -0.148 4.148 23 H 0.263 0.737 24 H 0.023 0.977 25 H 0.029 0.971 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.144 0.856 29 H 0.113 0.887 30 H 0.412 0.588 31 H 0.136 0.864 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.850 -23.541 4.285 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.570 4.570 11 S 1.470 4.530 12 O -0.825 6.825 13 C -0.635 4.635 14 C 0.330 3.670 15 O -0.381 6.381 16 N -0.321 5.321 17 C 0.055 3.945 18 C -0.143 4.143 19 C -0.118 4.118 20 C -0.158 4.158 21 C -0.121 4.121 22 C -0.169 4.169 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.124 0.876 27 H 0.090 0.910 28 H 0.162 0.838 29 H 0.132 0.868 30 H 0.248 0.752 31 H 0.154 0.846 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.872 -23.652 4.243 24.737 hybrid contribution 2.527 1.289 -1.777 3.347 sum 8.398 -22.364 2.465 24.015 Atomic orbital electron populations 1.69948 1.06046 1.27014 1.50057 1.25053 0.94921 0.99344 0.95185 0.86597 0.79535 0.82917 0.78589 1.20327 1.21161 1.20103 1.21108 0.92938 0.90427 1.51490 0.92547 1.18776 0.92980 0.90072 0.98203 1.27774 1.09977 1.13304 1.05937 1.71121 0.84598 0.85193 1.12103 1.93088 1.55177 1.83608 1.50653 1.28337 1.19894 1.06117 1.09104 1.19959 0.86826 0.85313 0.74875 1.90790 1.14119 1.86449 1.46780 1.43613 1.10929 1.04110 1.73478 1.17807 0.95758 0.84298 0.96673 1.21280 0.96326 0.98219 0.98461 1.21083 0.99580 0.92107 0.99031 1.21140 0.96643 0.99012 0.99009 1.20926 0.96075 0.96350 0.98774 1.20887 1.02213 0.92548 1.01250 0.92683 0.95876 0.95236 0.87563 0.90972 0.83832 0.86846 0.75243 0.84573 0.85657 0.86026 0.85754 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.98 4.98 -27.88 -0.14 0.84 16 10 C -0.43 -8.15 5.86 37.16 0.22 -7.94 16 11 S 1.27 20.86 12.37 -107.50 -1.33 19.53 16 12 O -0.83 -19.29 17.93 -36.34 -0.65 -19.94 16 13 C -0.50 -5.75 6.41 36.01 0.23 -5.52 16 14 C 0.54 7.21 7.59 -10.99 -0.08 7.13 16 15 O -0.51 -8.68 13.39 4.44 0.06 -8.63 16 16 N -0.68 -6.93 5.34 -9.86 -0.05 -6.98 16 17 C 0.15 1.68 6.28 -83.69 -0.53 1.15 16 18 C -0.12 -1.56 8.66 -39.39 -0.34 -1.90 16 19 C -0.10 -1.03 10.04 -39.61 -0.40 -1.43 16 20 C -0.14 -1.21 10.04 -39.55 -0.40 -1.61 16 21 C -0.10 -0.84 10.04 -39.61 -0.40 -1.23 16 22 C -0.15 -1.31 9.96 -39.39 -0.39 -1.71 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.11 1.67 8.14 -51.92 -0.42 1.25 16 27 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 28 H 0.14 1.02 8.14 -51.92 -0.42 0.60 16 29 H 0.11 1.25 8.14 -51.92 -0.42 0.82 16 30 H 0.41 2.70 8.82 -40.82 -0.36 2.34 16 31 H 0.14 2.03 6.41 -52.48 -0.34 1.69 16 32 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -38.30 319.97 -8.54 -46.84 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -4.47 Total: -0.42 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -2.64 Total: -25.56 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.68 Total: -33.08 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.59 Total: -28.57 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 20.86 SS G_CDS: -1.33 Total: 19.53 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -38.30 -8.54 -46.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283803212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.330 kcal (2) G-P(sol) polarization free energy of solvation -38.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds