Wall clock time and date at job start Tue Mar 31 2020 05:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00156 * 2 1 4 4 H 1.48495 * 109.47698 * 240.00024 * 3 2 1 5 5 H 1.48500 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46945 * 119.99800 * 3 2 1 7 7 C 1.37878 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99748 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99846 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46675 * 179.97438 * 9 7 2 11 11 S 1.81407 * 109.46831 * 179.97438 * 10 9 7 12 12 O 1.42098 * 109.46761 * 63.61803 * 11 10 9 13 13 C 1.81403 * 102.99918 * 179.97438 * 11 10 9 14 14 C 1.50701 * 109.47200 * 180.02562 * 13 11 10 15 15 O 1.21287 * 119.99646 * 0.02562 * 14 13 11 16 16 N 1.34773 * 119.99846 * 180.02562 * 14 13 11 17 17 C 1.39924 * 119.99818 * 185.27752 * 16 14 13 18 18 C 1.38873 * 120.07282 * 33.33155 * 17 16 14 19 19 C 1.38106 * 119.93058 * 179.97438 * 18 17 16 20 20 C 1.38278 * 120.07475 * 0.02562 * 19 18 17 21 21 C 1.38283 * 120.13761 * 359.95736 * 20 19 18 22 22 C 1.38106 * 120.07186 * 0.04184 * 21 20 19 23 23 H 0.96996 * 120.00241 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47361 * 60.00034 * 9 7 2 25 25 H 1.08997 * 109.47246 * 299.99769 * 9 7 2 26 26 H 1.09000 * 109.47189 * 59.99939 * 10 9 7 27 27 H 1.09001 * 109.47590 * 299.99806 * 10 9 7 28 28 H 1.09004 * 109.47239 * 60.00068 * 13 11 10 29 29 H 1.09003 * 109.47376 * 300.00768 * 13 11 10 30 30 H 0.97000 * 120.00137 * 5.27364 * 16 14 13 31 31 H 1.08005 * 120.03105 * 359.70896 * 18 17 16 32 32 H 1.08007 * 119.96089 * 179.97438 * 19 18 17 33 33 H 1.07998 * 119.93502 * 179.97438 * 20 19 18 34 34 H 1.08001 * 119.96439 * 180.02562 * 21 20 19 35 35 H 1.08003 * 120.03629 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 16 1.3381 -5.2331 -0.0034 12 8 0.5854 -5.3448 -1.2034 13 6 2.6648 -6.4703 -0.0054 14 6 2.0632 -7.8520 -0.0067 15 8 0.8581 -7.9886 -0.0068 16 7 2.8644 -8.9357 -0.0078 17 6 2.3099 -10.2155 -0.1205 18 6 1.1641 -10.4130 -0.8798 19 6 0.6196 -11.6775 -0.9895 20 6 1.2138 -12.7462 -0.3438 21 6 2.3550 -12.5529 0.4128 22 6 2.9044 -11.2910 0.5265 23 1 -0.4850 0.8400 0.0004 24 1 0.6246 -2.5563 -0.8920 25 1 0.6240 -2.5575 0.8880 26 1 2.8719 -3.6051 0.8873 27 1 2.8719 -3.6036 -0.8927 28 1 3.2817 -6.3430 0.8843 29 1 3.2805 -6.3415 -0.8956 30 1 3.8253 -8.8286 0.0695 31 1 0.6968 -9.5779 -1.3806 32 1 -0.2718 -11.8316 -1.5796 33 1 0.7859 -13.7340 -0.4308 34 1 2.8170 -13.3897 0.9156 35 1 3.7955 -11.1406 1.1179 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283803212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:42 Heat of formation + Delta-G solvation = -79.058373 kcal Electronic energy + Delta-G solvation = -18455.124185 eV Core-core repulsion = 15350.541340 eV Total energy + Delta-G solvation = -3104.582845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.56782 -39.41837 -36.79365 -35.91170 -35.69749 -32.85440 -31.94166 -31.83087 -29.57538 -27.31226 -24.15719 -23.56664 -23.06495 -21.51585 -19.05642 -18.75533 -18.30511 -18.05586 -17.20795 -16.76870 -16.57359 -15.95127 -15.91027 -15.62641 -15.34875 -14.95279 -14.55298 -14.36999 -14.26285 -14.07391 -13.76625 -13.41669 -12.96840 -12.76149 -12.64461 -12.58820 -12.19272 -11.96857 -11.91795 -11.53839 -11.49976 -11.12701 -10.85551 -10.58470 -9.88219 -9.16680 -9.12864 -8.20201 -6.34067 0.25533 0.45220 0.48400 1.40427 1.43974 1.45198 1.52044 1.82340 2.01781 2.40867 2.88011 2.93104 3.11830 3.59151 4.00498 4.06382 4.15313 4.30261 4.32772 4.48184 4.51669 4.52565 4.59177 4.64087 5.05399 5.10130 5.33648 5.36727 5.44136 5.52420 5.54501 5.61989 5.78184 6.07792 6.17713 6.28388 6.81618 6.99228 7.35490 8.90732 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.063241 B = 0.002779 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.642468 B =10071.774298 C =10389.068924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.033 3.967 10 C -0.424 4.424 11 S 1.304 4.696 12 O -0.912 6.912 13 C -0.478 4.478 14 C 0.535 3.465 15 O -0.556 6.556 16 N -0.656 5.656 17 C 0.126 3.874 18 C -0.156 4.156 19 C -0.114 4.114 20 C -0.137 4.137 21 C -0.100 4.100 22 C -0.141 4.141 23 H 0.265 0.735 24 H -0.028 1.028 25 H 0.022 0.978 26 H 0.149 0.851 27 H 0.065 0.935 28 H 0.204 0.796 29 H 0.129 0.871 30 H 0.431 0.569 31 H 0.100 0.900 32 H 0.130 0.870 33 H 0.148 0.852 34 H 0.159 0.841 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.508 -25.237 6.155 28.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.180 1.180 7 C -0.579 4.579 8 H 0.088 0.912 9 C -0.005 4.005 10 C -0.562 4.562 11 S 1.503 4.497 12 O -0.907 6.907 13 C -0.616 4.616 14 C 0.323 3.677 15 O -0.434 6.434 16 N -0.303 5.303 17 C 0.032 3.968 18 C -0.176 4.176 19 C -0.133 4.133 20 C -0.156 4.156 21 C -0.118 4.118 22 C -0.161 4.161 23 H 0.074 0.926 24 H -0.010 1.010 25 H 0.040 0.960 26 H 0.167 0.833 27 H 0.084 0.916 28 H 0.221 0.779 29 H 0.147 0.853 30 H 0.271 0.729 31 H 0.118 0.882 32 H 0.148 0.852 33 H 0.166 0.834 34 H 0.177 0.823 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.559 -25.330 6.113 27.755 hybrid contribution 1.448 1.572 -2.338 3.168 sum 11.007 -23.758 3.775 26.454 Atomic orbital electron populations 1.70110 1.08029 1.28064 1.51365 1.26103 0.95818 1.03757 0.94697 0.85420 0.78160 0.77628 0.79350 1.19719 1.21097 1.18040 1.21643 0.93801 0.91599 1.50840 0.91243 1.18653 0.93811 0.92623 0.95429 1.27620 1.08705 1.12255 1.07632 1.70168 0.85008 0.84626 1.09870 1.92986 1.59729 1.85018 1.53005 1.28003 1.17862 1.02856 1.12887 1.20220 0.86445 0.86492 0.74506 1.90798 1.16296 1.87104 1.49219 1.43373 1.11671 1.03202 1.72093 1.18013 0.95959 0.85226 0.97584 1.21201 0.97942 0.98156 1.00309 1.21256 1.00168 0.92038 0.99824 1.21496 0.96668 0.99441 0.97974 1.21409 0.95429 0.97149 0.97822 1.21246 1.02689 0.91834 1.00309 0.92649 1.00996 0.95970 0.83335 0.91589 0.77851 0.85280 0.72866 0.88230 0.85180 0.83407 0.82304 0.82553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.08 13.29 21.45 0.28 -57.79 16 2 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 3 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.54 -30.46 9.11 25.60 0.23 -30.23 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.03 1.76 4.98 29.85 0.15 1.90 16 10 C -0.42 -15.78 5.86 71.98 0.42 -15.36 16 11 S 1.30 43.08 12.37 -56.49 -0.70 42.38 16 12 O -0.91 -45.05 17.93 -147.92 -2.65 -47.70 16 13 C -0.48 -9.66 6.41 71.24 0.46 -9.20 16 14 C 0.54 13.68 7.59 87.66 0.67 14.34 16 15 O -0.56 -19.80 13.39 -1.99 -0.03 -19.82 16 16 N -0.66 -12.11 5.34 -303.50 -1.62 -13.73 16 17 C 0.13 2.69 6.28 38.15 0.24 2.93 16 18 C -0.16 -4.12 8.66 22.39 0.19 -3.92 16 19 C -0.11 -2.39 10.04 22.25 0.22 -2.17 16 20 C -0.14 -2.07 10.04 22.29 0.22 -1.85 16 21 C -0.10 -1.26 10.04 22.25 0.22 -1.03 16 22 C -0.14 -2.02 9.96 22.39 0.22 -1.80 16 23 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 24 H -0.03 -1.77 8.14 -2.39 -0.02 -1.79 16 25 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.15 4.19 8.14 -2.39 -0.02 4.17 16 27 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.20 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.43 4.06 8.82 -92.71 -0.82 3.25 16 31 H 0.10 3.31 6.41 -2.91 -0.02 3.29 16 32 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 35 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -90.90 319.97 1.31 -89.59 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.28 Total: 7.33 kcal Atomic # 6 Polarization: -49.99 SS G_CDS: 3.71 Total: -46.27 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -1.34 Total: -71.52 kcal Atomic # 8 Polarization: -64.85 SS G_CDS: -2.68 Total: -67.53 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 43.08 SS G_CDS: -0.70 Total: 42.38 kcal Total: -90.90 1.31 -89.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283803212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.536 kcal (2) G-P(sol) polarization free energy of solvation -90.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds