Wall clock time and date at job start Tue Mar 31 2020 05:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31369 * 1 3 3 Si 1.86802 * 119.99848 * 2 1 4 4 H 1.48497 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47018 * 300.00194 * 3 2 1 6 6 H 1.48496 * 109.47166 * 60.00209 * 3 2 1 7 7 C 1.39040 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00154 * 159.84885 * 7 2 1 9 9 N 1.36883 * 119.99917 * 339.84801 * 7 2 1 10 10 C 1.34774 * 119.99813 * 134.18582 * 9 7 2 11 11 O 1.21602 * 120.00391 * 185.98246 * 10 9 7 12 12 C 1.47671 * 120.00078 * 5.98581 * 10 9 7 13 13 C 1.39643 * 120.13212 * 325.03584 * 12 10 9 14 14 C 1.38374 * 119.80021 * 180.02562 * 13 12 10 15 15 O 1.35932 * 119.96541 * 179.97438 * 14 13 12 16 16 C 1.38902 * 120.07245 * 0.25255 * 14 13 12 17 17 C 1.38211 * 120.27116 * 359.49083 * 16 14 13 18 18 C 1.38138 * 120.20362 * 0.50791 * 17 16 14 19 19 Cl 1.73601 * 120.04290 * 179.76633 * 18 17 16 20 20 C 1.46500 * 120.00157 * 314.19368 * 9 7 2 21 21 C 1.52999 * 117.49796 * 1.15886 * 20 9 7 22 22 C 1.53005 * 117.49632 * 292.50170 * 20 9 7 23 23 H 0.97003 * 120.00161 * 5.05068 * 1 2 3 24 24 H 1.07996 * 120.10253 * 0.04340 * 13 12 10 25 25 H 0.96698 * 113.99790 * 89.99532 * 15 14 13 26 26 H 1.08001 * 119.85958 * 179.72363 * 16 14 13 27 27 H 1.08011 * 119.90101 * 180.23507 * 17 16 14 28 28 H 1.08997 * 115.55156 * 146.83727 * 20 9 7 29 29 H 1.09002 * 117.49934 * 0.02562 * 21 20 9 30 30 H 1.09000 * 117.49465 * 145.01914 * 21 20 9 31 31 H 1.08997 * 117.49557 * 214.97910 * 22 20 9 32 32 H 1.09001 * 117.49520 * 0.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.7076 1.3465 0.0006 5 1 1.8888 2.3965 -1.2125 6 1 1.8889 2.3964 1.2125 7 6 2.0089 -1.2041 0.0005 8 1 3.0393 -1.2329 -0.3216 9 7 1.3874 -2.3531 0.4095 10 6 1.5147 -3.4825 -0.3149 11 8 0.8770 -4.4731 -0.0137 12 6 2.4286 -3.5170 -1.4742 13 6 2.5925 -2.3825 -2.2718 14 6 3.4503 -2.4227 -3.3568 15 8 3.6119 -1.3205 -4.1357 16 6 4.1420 -3.5899 -3.6544 17 6 3.9861 -4.7129 -2.8640 18 6 3.1328 -4.6854 -1.7780 19 17 2.9355 -6.1003 -0.7916 20 6 0.5837 -2.3551 1.6343 21 6 0.4555 -1.0351 2.3973 22 6 1.3195 -2.1654 2.9623 23 1 -0.4850 0.8368 -0.0740 24 1 2.0516 -1.4764 -2.0423 25 1 4.3240 -0.7344 -3.8449 26 1 4.8072 -3.6188 -4.5047 27 1 4.5298 -5.6162 -3.0986 28 1 -0.2808 -3.0190 1.6283 29 1 0.9689 -0.1652 1.9877 30 1 -0.4932 -0.8308 2.8935 31 1 0.9388 -2.7041 3.8300 32 1 2.4014 -2.0387 2.9246 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292683280.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:15 Heat of formation + Delta-G solvation = -5.621597 kcal Electronic energy + Delta-G solvation = -20114.714556 eV Core-core repulsion = 16875.439367 eV Total energy + Delta-G solvation = -3239.275188 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.72848 -38.39048 -36.77092 -35.89312 -35.38989 -33.29029 -31.73977 -30.35919 -29.06039 -25.31431 -23.68725 -22.24165 -21.33605 -20.86891 -19.47641 -18.15369 -16.97284 -16.30682 -15.97315 -15.42619 -15.04119 -14.84160 -14.32668 -13.93192 -13.50900 -13.01182 -12.97737 -12.56425 -12.21577 -12.12206 -11.78008 -11.55320 -11.29435 -10.90982 -10.74055 -10.54941 -10.45904 -10.41755 -10.23300 -9.78132 -9.36172 -8.81165 -8.57351 -8.41807 -8.08014 -7.38376 -6.51638 -4.24504 1.29149 1.59491 2.67132 2.98009 3.10486 3.12302 3.52339 3.91313 4.19892 4.45653 4.53948 4.71294 5.12376 5.21579 5.32865 5.70776 5.77441 5.97559 6.00559 6.11777 6.15196 6.30577 6.41054 6.48091 6.69873 6.74868 6.84323 7.02240 7.08634 7.25895 7.30575 7.88667 7.92591 8.21100 8.87953 9.34223 9.79784 10.48815 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.008948 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.441642 B = 3128.403958 C = 4591.372776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.361 4.361 8 H 0.090 0.910 9 N -0.405 5.405 10 C 0.518 3.482 11 O -0.575 6.575 12 C -0.071 4.071 13 C -0.080 4.080 14 C 0.082 3.918 15 O -0.496 6.496 16 C -0.130 4.130 17 C -0.119 4.119 18 C -0.011 4.011 19 Cl -0.055 7.055 20 C 0.111 3.889 21 C -0.145 4.145 22 C -0.218 4.218 23 H 0.273 0.727 24 H 0.178 0.822 25 H 0.386 0.614 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.575 -1.312 -2.924 8.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.152 4.152 3 Si 0.724 3.276 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.488 4.488 8 H 0.107 0.893 9 N -0.122 5.122 10 C 0.307 3.693 11 O -0.459 6.459 12 C -0.075 4.075 13 C -0.098 4.098 14 C 0.038 3.962 15 O -0.306 6.306 16 C -0.149 4.149 17 C -0.138 4.138 18 C -0.039 4.039 19 Cl -0.026 7.026 20 C 0.005 3.995 21 C -0.183 4.183 22 C -0.257 4.257 23 H 0.083 0.917 24 H 0.195 0.805 25 H 0.242 0.758 26 H 0.148 0.852 27 H 0.150 0.850 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.559 -2.014 -2.915 7.455 hybrid contribution 0.815 1.116 0.273 1.408 sum 7.374 -0.898 -2.642 7.884 Atomic orbital electron populations 1.70039 1.06110 1.28136 1.42472 1.25388 0.95119 0.99610 0.95076 0.86325 0.80457 0.82206 0.78566 1.18871 1.20171 1.20026 1.19324 0.96519 0.84961 1.48030 0.89271 1.42614 1.43462 1.08027 1.18052 1.18011 0.84103 0.84602 0.82567 1.90682 1.48520 1.35760 1.70938 1.19824 0.97940 0.91935 0.97838 1.22657 0.96528 1.00171 0.90472 1.18531 0.98513 0.87457 0.91696 1.84825 1.58432 1.34302 1.53030 1.21342 1.00575 0.92896 1.00099 1.20683 0.99558 0.99072 0.94468 1.21013 0.99206 0.88885 0.94780 1.98360 1.96544 1.38190 1.69490 1.21105 0.95825 1.00279 0.82246 1.23196 0.99677 0.94089 1.01342 1.23385 0.99113 1.05408 0.97790 0.91673 0.80464 0.75839 0.85226 0.84979 0.87639 0.86984 0.90606 0.90280 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.50 11.34 55.50 0.63 -19.87 16 2 C 0.06 1.32 2.89 -17.45 -0.05 1.27 16 3 Si 0.90 17.76 29.17 -169.99 -4.96 12.80 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.36 -8.50 5.58 -15.00 -0.08 -8.58 16 8 H 0.09 2.05 6.57 -52.49 -0.34 1.71 16 9 N -0.40 -9.93 2.77 -108.85 -0.30 -10.24 16 10 C 0.52 12.83 7.12 -12.41 -0.09 12.74 16 11 O -0.58 -15.27 14.81 5.28 0.08 -15.19 16 12 C -0.07 -1.54 5.50 -104.95 -0.58 -2.12 16 13 C -0.08 -1.59 7.76 -39.01 -0.30 -1.89 16 14 C 0.08 1.38 6.70 -39.29 -0.26 1.12 16 15 O -0.50 -7.35 13.50 -19.53 -0.26 -7.62 16 16 C -0.13 -1.91 9.98 -39.35 -0.39 -2.30 16 17 C -0.12 -1.84 9.81 -39.63 -0.39 -2.23 16 18 C -0.01 -0.21 6.33 -39.05 -0.25 -0.45 16 19 Cl -0.05 -1.04 26.65 -51.86 -1.38 -2.42 16 20 C 0.11 2.59 5.62 -67.93 -0.38 2.21 16 21 C -0.15 -3.12 8.17 -26.69 -0.22 -3.34 16 22 C -0.22 -4.42 10.39 -26.69 -0.28 -4.70 16 23 H 0.27 6.33 8.32 -40.82 -0.34 5.99 16 24 H 0.18 3.89 5.50 -52.49 -0.29 3.60 16 25 H 0.39 3.85 9.06 45.56 0.41 4.26 16 26 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.13 1.66 8.06 -52.48 -0.42 1.23 16 28 H 0.11 2.57 7.78 -51.93 -0.40 2.16 16 29 H 0.11 2.56 4.51 -51.93 -0.23 2.33 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 LS Contribution 287.67 15.07 4.34 4.34 Total: -1.00 -28.28 287.67 -7.24 -35.52 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -2.11 Total: 10.96 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -3.27 Total: -8.27 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 0.33 Total: -30.10 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.19 Total: -22.81 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -4.96 Total: 12.80 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.38 Total: -2.42 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.28 -7.24 -35.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292683280.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.896 kcal (2) G-P(sol) polarization free energy of solvation -28.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds