Wall clock time and date at job start Tue Mar 31 2020 05:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31391 * 1 3 3 Si 1.86792 * 120.00142 * 2 1 4 4 H 1.48502 * 109.47203 * 89.76102 * 3 2 1 5 5 H 1.48503 * 109.46918 * 209.76219 * 3 2 1 6 6 H 1.48500 * 109.47041 * 329.76101 * 3 2 1 7 7 C 1.39022 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00294 * 321.71516 * 7 2 1 9 9 N 1.36905 * 119.99837 * 141.71065 * 7 2 1 10 10 C 1.34775 * 120.00175 * 130.66592 * 9 7 2 11 11 O 1.21626 * 120.00363 * 188.65359 * 10 9 7 12 12 C 1.47377 * 119.99569 * 8.65926 * 10 9 7 13 13 C 1.39807 * 120.18271 * 322.02554 * 12 10 9 14 14 C 1.37717 * 119.91328 * 179.97438 * 13 12 10 15 15 C 1.38709 * 120.29096 * 359.97438 * 14 13 12 16 16 Cl 1.73599 * 119.81062 * 180.02562 * 15 14 13 17 17 C 1.38219 * 120.37782 * 0.04185 * 15 14 13 18 18 C 1.38620 * 120.07620 * 359.70034 * 17 15 14 19 19 O 1.35661 * 120.14809 * 180.28072 * 18 17 15 20 20 C 1.46507 * 120.00125 * 310.66790 * 9 7 2 21 21 C 1.52997 * 117.49885 * 359.76069 * 20 9 7 22 22 C 1.53001 * 117.49733 * 291.10046 * 20 9 7 23 23 H 0.97003 * 119.99588 * 359.97438 * 1 2 3 24 24 H 1.07996 * 120.03805 * 0.02562 * 13 12 10 25 25 H 1.08003 * 119.85021 * 180.02562 * 14 13 12 26 26 H 1.07997 * 119.96586 * 179.97438 * 17 15 14 27 27 H 0.96702 * 113.99590 * 270.25039 * 19 18 17 28 28 H 1.08996 * 115.54877 * 145.43082 * 20 9 7 29 29 H 1.09004 * 117.49683 * 359.97438 * 21 20 9 30 30 H 1.08994 * 117.50298 * 145.01807 * 21 20 9 31 31 H 1.09004 * 117.49605 * 214.98037 * 22 20 9 32 32 H 1.08998 * 117.49597 * 359.97339 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6176 0.0000 4 1 2.4904 2.0493 1.4001 5 1 3.5480 1.4385 -0.6950 6 1 1.4479 2.6511 -0.7051 7 6 2.0090 -1.2040 0.0005 8 1 1.6432 -2.0385 0.5804 9 7 3.1572 -1.3318 -0.7341 10 6 4.2683 -1.8398 -0.1650 11 8 5.3266 -1.8089 -0.7635 12 6 4.2007 -2.4327 1.1826 13 6 3.3865 -1.8583 2.1632 14 6 3.3271 -2.4173 3.4205 15 6 4.0717 -3.5489 3.7188 16 17 3.9870 -4.2436 5.3075 17 6 4.8809 -4.1265 2.7586 18 6 4.9482 -3.5798 1.4865 19 8 5.7376 -4.1487 0.5413 20 6 3.1781 -0.9165 -2.1389 21 6 1.8836 -0.3529 -2.7283 22 6 2.3657 -1.7481 -3.1336 23 1 -0.4850 0.8401 0.0004 24 1 2.8042 -0.9780 1.9348 25 1 2.6975 -1.9730 4.1771 26 1 5.4581 -5.0072 2.9983 27 1 6.6415 -3.8054 0.5250 28 1 4.1180 -0.4899 -2.4890 29 1 1.0162 -0.2916 -2.0710 30 1 1.9718 0.4442 -3.4664 31 1 2.7711 -1.8682 -4.1383 32 1 1.8161 -2.6044 -2.7429 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299440643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:40 Heat of formation + Delta-G solvation = -10.675059 kcal Electronic energy + Delta-G solvation = -19990.840125 eV Core-core repulsion = 16751.345802 eV Total energy + Delta-G solvation = -3239.494323 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.94327 -38.36167 -36.87163 -36.12541 -35.79990 -33.40760 -32.05229 -30.31088 -29.44023 -25.27990 -23.62201 -22.39484 -21.60987 -21.00382 -19.41166 -18.18475 -17.33547 -16.54560 -15.84082 -15.46407 -15.23540 -14.88212 -14.18743 -14.18337 -13.42661 -13.22831 -13.13868 -12.90307 -12.61020 -12.30261 -11.79200 -11.70317 -11.33883 -11.00568 -10.96612 -10.76689 -10.59869 -10.34930 -10.18944 -10.01087 -9.58525 -9.07042 -8.58174 -8.54144 -8.25712 -7.58904 -6.79078 -4.27901 1.18039 1.56791 2.24162 3.02453 3.16297 3.27710 3.44610 3.96591 4.08090 4.18303 4.49235 4.57071 4.96948 5.15220 5.36195 5.52363 5.73229 5.73814 5.82533 5.89882 5.93363 6.25394 6.34199 6.37242 6.46806 6.64150 6.76551 6.84409 7.05805 7.15712 7.27531 7.95137 7.98999 8.13239 8.77453 9.19320 9.57992 10.27151 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.019872 B = 0.006664 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.655413 B = 4200.752288 C = 5051.978653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.102 3.898 3 Si 0.838 3.162 4 H -0.271 1.271 5 H -0.254 1.254 6 H -0.279 1.279 7 C -0.384 4.384 8 H 0.101 0.899 9 N -0.424 5.424 10 C 0.533 3.467 11 O -0.584 6.584 12 C -0.120 4.120 13 C -0.035 4.035 14 C -0.140 4.140 15 C -0.009 4.009 16 Cl -0.081 7.081 17 C -0.160 4.160 18 C 0.156 3.844 19 O -0.484 6.484 20 C 0.078 3.922 21 C -0.194 4.194 22 C -0.187 4.187 23 H 0.279 0.721 24 H 0.171 0.829 25 H 0.134 0.866 26 H 0.135 0.865 27 H 0.394 0.606 28 H 0.110 0.890 29 H 0.136 0.864 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.914 -2.763 4.720 7.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.111 4.111 3 Si 0.661 3.339 4 H -0.197 1.197 5 H -0.177 1.177 6 H -0.204 1.204 7 C -0.509 4.509 8 H 0.118 0.882 9 N -0.143 5.143 10 C 0.323 3.677 11 O -0.469 6.469 12 C -0.123 4.123 13 C -0.053 4.053 14 C -0.159 4.159 15 C -0.036 4.036 16 Cl -0.052 7.052 17 C -0.179 4.179 18 C 0.110 3.890 19 O -0.295 6.295 20 C -0.027 4.027 21 C -0.231 4.231 22 C -0.226 4.226 23 H 0.089 0.911 24 H 0.188 0.812 25 H 0.152 0.848 26 H 0.153 0.847 27 H 0.252 0.748 28 H 0.128 0.872 29 H 0.154 0.846 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.699 -3.030 4.402 7.116 hybrid contribution 0.532 1.019 0.286 1.185 sum 5.230 -2.011 4.688 7.306 Atomic orbital electron populations 1.70072 1.06926 1.29089 1.38906 1.25357 0.94366 0.98563 0.92807 0.87313 0.82860 0.84277 0.79483 1.19651 1.17712 1.20421 1.18770 1.01285 0.99376 1.31467 0.88178 1.42813 1.09628 1.55266 1.06568 1.18056 0.83566 0.81222 0.84849 1.90619 1.29319 1.61913 1.65029 1.20512 0.99943 0.95798 0.96079 1.22137 0.93090 1.00265 0.89823 1.21092 1.00862 0.95899 0.98007 1.20845 1.00201 0.96368 0.86191 1.98343 1.97591 1.84313 1.24998 1.21033 1.02698 1.02499 0.91676 1.18258 0.93434 0.90517 0.86831 1.84686 1.26391 1.63744 1.54643 1.21645 0.95357 1.02728 0.82967 1.23645 1.00522 0.95711 1.03231 1.23179 1.05018 0.95703 0.98679 0.91063 0.81217 0.84785 0.84673 0.74839 0.87200 0.84603 0.90092 0.89877 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.03 13.37 55.50 0.74 -19.29 16 2 C 0.10 2.41 2.88 -17.45 -0.05 2.36 16 3 Si 0.84 18.55 26.78 -169.99 -4.55 14.00 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.25 -5.88 6.85 56.52 0.39 -5.49 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.38 -9.20 5.70 -15.00 -0.09 -9.29 16 8 H 0.10 2.56 6.91 -52.49 -0.36 2.20 16 9 N -0.42 -10.00 2.24 -108.95 -0.24 -10.24 16 10 C 0.53 12.48 7.15 -12.54 -0.09 12.39 16 11 O -0.58 -14.45 15.87 -11.37 -0.18 -14.63 16 12 C -0.12 -2.46 5.48 -104.84 -0.57 -3.03 16 13 C -0.03 -0.66 7.87 -39.19 -0.31 -0.97 16 14 C -0.14 -2.27 9.80 -39.60 -0.39 -2.66 16 15 C -0.01 -0.14 6.32 -39.41 -0.25 -0.39 16 16 Cl -0.08 -1.08 28.94 -51.86 -1.50 -2.58 16 17 C -0.16 -2.50 9.75 -39.45 -0.38 -2.89 16 18 C 0.16 2.84 6.68 -38.69 -0.26 2.58 16 19 O -0.48 -8.51 12.23 -35.31 -0.43 -8.94 16 20 C 0.08 1.71 4.93 -67.93 -0.33 1.37 16 21 C -0.19 -3.96 8.15 -26.69 -0.22 -4.17 16 22 C -0.19 -3.68 10.41 -26.69 -0.28 -3.96 16 23 H 0.28 6.38 8.31 -40.82 -0.34 6.04 16 24 H 0.17 3.46 5.58 -52.49 -0.29 3.16 16 25 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 26 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.39 5.38 9.06 45.56 0.41 5.79 16 28 H 0.11 2.41 7.79 -51.93 -0.40 2.00 16 29 H 0.14 3.11 4.85 -51.93 -0.25 2.85 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 LS Contribution 288.67 15.07 4.35 4.35 Total: -1.00 -27.01 288.67 -7.20 -34.21 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -2.16 Total: 11.78 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -3.22 Total: -8.65 kcal Atomic # 7 Polarization: -30.03 SS G_CDS: 0.50 Total: -29.53 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.61 Total: -23.57 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -4.55 Total: 14.00 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.50 Total: -2.58 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.01 -7.20 -34.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299440643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.535 kcal (2) G-P(sol) polarization free energy of solvation -27.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds