Wall clock time and date at job start Tue Mar 31 2020 05:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36903 * 120.00018 * 2 1 4 4 H 1.07994 * 120.00142 * 139.29181 * 3 2 1 5 5 C 1.39026 * 120.00049 * 319.30224 * 3 2 1 6 6 N 1.31374 * 120.00249 * 162.58259 * 5 3 2 7 7 Si 1.86803 * 119.99657 * 342.57642 * 5 3 2 8 8 H 1.48498 * 109.47170 * 92.91551 * 7 5 3 9 9 H 1.48500 * 109.46801 * 212.91590 * 7 5 3 10 10 H 1.48503 * 109.47322 * 332.91302 * 7 5 3 11 11 C 1.34777 * 119.99962 * 179.97438 * 2 1 3 12 12 O 1.21619 * 119.99757 * 5.42578 * 11 2 1 13 13 C 1.47432 * 119.99681 * 185.42167 * 11 2 1 14 14 C 1.39585 * 120.05040 * 319.00203 * 13 11 2 15 15 C 1.37882 * 120.16102 * 180.02562 * 14 13 11 16 16 Cl 1.73598 * 120.02174 * 179.83499 * 15 14 13 17 17 C 1.38749 * 119.95044 * 359.86247 * 15 14 13 18 18 C 1.37678 * 120.32652 * 0.02562 * 17 15 14 19 19 C 1.38843 * 120.89265 * 0.31452 * 18 17 15 20 20 O 1.36132 * 111.40381 * 179.13044 * 19 18 17 21 21 C 1.43781 * 109.12522 * 18.71720 * 20 19 18 22 22 C 1.51683 * 132.11182 * 180.35646 * 18 17 15 23 23 H 1.08997 * 109.47744 * 264.58897 * 1 2 3 24 24 H 1.09004 * 109.47432 * 24.59306 * 1 2 3 25 25 H 1.09006 * 109.46775 * 144.58640 * 1 2 3 26 26 H 0.96997 * 120.00214 * 180.02562 * 6 5 3 27 27 H 1.08001 * 119.91812 * 0.02976 * 14 13 11 28 28 H 1.08004 * 119.83498 * 179.97438 * 17 15 14 29 29 H 1.09002 * 110.75202 * 214.11976 * 21 20 19 30 30 H 1.09002 * 110.74921 * 90.94434 * 21 20 19 31 31 H 1.09000 * 110.94371 * 46.43145 * 22 18 17 32 32 H 1.08999 * 110.97656 * 282.74303 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.0335 1.2988 0.6100 5 6 1.7066 2.2440 -0.7851 6 7 2.1314 3.4636 -0.5439 7 14 0.5074 1.9320 -2.1830 8 1 -0.8823 2.1191 -1.6942 9 1 0.7762 2.8868 -3.2881 10 1 0.6751 0.5420 -2.6781 11 6 2.1389 -1.1672 0.0005 12 8 1.5348 -2.2181 -0.0986 13 6 3.6082 -1.1699 0.1212 14 6 4.3679 -0.2233 -0.5681 15 6 5.7423 -0.2241 -0.4573 16 17 6.6838 0.9523 -1.3195 17 6 6.3722 -1.1661 0.3433 18 6 5.6315 -2.1025 1.0289 19 6 4.2469 -2.1283 0.9294 20 8 3.7145 -3.1399 1.6686 21 6 4.6815 -3.5724 2.6408 22 6 6.0298 -3.2274 1.9653 23 1 -0.3634 -0.0969 1.0230 24 1 -0.3634 0.9345 -0.4277 25 1 -0.3633 -0.8376 -0.5955 26 1 1.8220 4.2021 -1.0914 27 1 3.8780 0.5117 -1.1896 28 1 7.4489 -1.1653 0.4284 29 1 4.6004 -4.6452 2.8155 30 1 4.5645 -3.0208 3.5737 31 1 6.7571 -2.8831 2.7006 32 1 6.4160 -4.0808 1.4080 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334418461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:10 Heat of formation + Delta-G solvation = -27.218392 kcal Electronic energy + Delta-G solvation = -19997.055983 eV Core-core repulsion = 16756.844288 eV Total energy + Delta-G solvation = -3240.211696 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.91153 -38.77201 -37.18780 -35.67154 -34.91775 -32.51068 -31.99676 -29.85743 -29.05405 -26.60390 -25.12166 -23.44056 -22.23639 -21.63165 -19.19761 -17.74467 -17.09987 -16.38779 -16.24121 -15.94518 -15.25132 -14.99686 -14.32740 -14.07966 -13.41191 -13.07488 -12.95273 -12.74936 -12.69507 -12.58367 -12.15543 -12.07017 -11.65368 -11.54350 -11.44323 -11.08938 -10.88154 -10.56477 -10.39934 -10.09909 -10.02254 -9.31160 -8.75115 -8.49672 -7.86490 -7.68730 -6.53642 -4.17815 1.33161 1.54376 2.50762 3.01420 3.18340 3.26820 3.48146 3.51313 4.04545 4.10203 4.34714 4.48803 4.71187 4.87989 5.00659 5.12751 5.35048 5.46150 5.65436 5.72418 5.76076 5.91967 6.05127 6.18525 6.25502 6.32802 6.47265 6.55499 6.61268 6.94729 7.27171 7.37068 7.98540 8.17159 8.84971 9.23574 9.58118 10.55053 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.008163 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.996497 B = 3429.109652 C = 4809.794446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.461 5.461 3 C -0.354 4.354 4 H 0.108 0.892 5 C 0.068 3.932 6 N -0.853 5.853 7 Si 0.878 3.122 8 H -0.273 1.273 9 H -0.286 1.286 10 H -0.259 1.259 11 C 0.523 3.477 12 O -0.581 6.581 13 C -0.104 4.104 14 C -0.013 4.013 15 C -0.079 4.079 16 Cl -0.071 7.071 17 C -0.052 4.052 18 C -0.188 4.188 19 C 0.150 3.850 20 O -0.283 6.283 21 C 0.046 3.954 22 C -0.101 4.101 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.277 0.723 27 H 0.170 0.830 28 H 0.130 0.870 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.221 -7.446 2.870 11.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.182 5.182 3 C -0.480 4.480 4 H 0.126 0.874 5 C -0.141 4.141 6 N -0.488 5.488 7 Si 0.705 3.295 8 H -0.199 1.199 9 H -0.213 1.213 10 H -0.183 1.183 11 C 0.312 3.688 12 O -0.466 6.466 13 C -0.108 4.108 14 C -0.031 4.031 15 C -0.105 4.105 16 Cl -0.043 7.043 17 C -0.071 4.071 18 C -0.189 4.189 19 C 0.102 3.898 20 O -0.196 6.196 21 C -0.030 4.030 22 C -0.138 4.138 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.188 0.812 28 H 0.148 0.852 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.742 -7.730 2.702 11.269 hybrid contribution -0.330 0.369 -0.606 0.782 sum 7.411 -7.361 2.096 10.654 Atomic orbital electron populations 1.21818 0.82466 1.01298 1.01259 1.43489 1.04396 1.05578 1.64693 1.19162 1.13355 0.87972 1.27560 0.87424 1.25368 0.97004 0.94675 0.97012 1.69701 1.42804 0.98735 1.37514 0.86927 0.80822 0.79471 0.82273 1.19929 1.21291 1.18332 1.17920 0.86142 0.84011 0.80738 1.90673 1.69489 1.31767 1.54667 1.19075 0.94660 0.95176 1.01864 1.21614 0.90680 0.95021 0.95834 1.20500 0.91999 0.95975 1.02056 1.98340 1.72495 1.57559 1.75872 1.20057 0.99659 0.92571 0.94817 1.20438 0.92999 1.00481 1.04994 1.19573 0.90672 0.87513 0.92016 1.87035 1.40234 1.46643 1.45668 1.23862 0.85990 1.01321 0.91808 1.21718 0.98287 0.96450 0.97388 0.93166 0.91856 0.91936 0.91239 0.81234 0.85178 0.87749 0.90584 0.89146 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.66 8.96 59.85 0.54 2.19 16 2 N -0.46 -11.41 2.53 -123.42 -0.31 -11.72 16 3 C -0.35 -9.04 6.84 -15.00 -0.10 -9.14 16 4 H 0.11 2.91 6.66 -52.49 -0.35 2.56 16 5 C 0.07 1.74 5.34 -17.46 -0.09 1.64 16 6 N -0.85 -22.77 13.95 55.50 0.77 -22.00 16 7 Si 0.88 20.06 24.94 -169.99 -4.24 15.82 16 8 H -0.27 -5.97 6.64 56.52 0.38 -5.59 16 9 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 11 C 0.52 13.00 7.27 -12.52 -0.09 12.91 16 12 O -0.58 -15.59 16.36 5.25 0.09 -15.51 16 13 C -0.10 -2.29 5.34 -104.72 -0.56 -2.85 16 14 C -0.01 -0.26 7.54 -39.21 -0.30 -0.55 16 15 C -0.08 -1.39 6.32 -39.52 -0.25 -1.64 16 16 Cl -0.07 -1.16 28.96 -51.86 -1.50 -2.66 16 17 C -0.05 -0.80 9.81 -39.60 -0.39 -1.18 16 18 C -0.19 -2.96 6.27 -104.12 -0.65 -3.61 16 19 C 0.15 2.93 6.71 -38.43 -0.26 2.67 16 20 O -0.28 -5.33 10.84 -20.16 -0.22 -5.55 16 21 C 0.05 0.56 8.00 38.05 0.30 0.87 16 22 C -0.10 -1.15 7.12 -26.50 -0.19 -1.34 16 23 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.06 1.39 3.55 -51.93 -0.18 1.21 16 25 H 0.06 1.35 7.52 -51.93 -0.39 0.96 16 26 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.17 3.79 6.16 -52.49 -0.32 3.46 16 28 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 29 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 284.91 15.07 4.29 4.29 Total: -1.00 -30.24 284.91 -6.10 -36.34 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -2.95 Total: 1.02 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -2.04 Total: -0.03 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.46 Total: -33.72 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.13 Total: -21.06 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.24 Total: 15.82 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.50 Total: -2.66 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.24 -6.10 -36.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334418461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.124 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds