Wall clock time and date at job start Tue Mar 31 2020 05:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99856 * 2 1 4 4 H 1.48501 * 109.47159 * 269.99717 * 3 2 1 5 5 H 1.48506 * 109.47496 * 29.99525 * 3 2 1 6 6 H 1.48498 * 109.47391 * 149.99937 * 3 2 1 7 7 C 1.37872 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00230 * 175.28527 * 7 2 1 9 9 C 1.50700 * 119.99989 * 355.56043 * 7 2 1 10 10 C 1.53004 * 115.55097 * 274.99073 * 9 7 2 11 11 N 1.46495 * 109.47052 * 294.33149 * 10 9 7 12 12 S 1.65609 * 120.00046 * 159.13246 * 11 10 9 13 13 O 1.42102 * 104.27418 * 181.07330 * 12 11 10 14 14 O 1.42097 * 104.27570 * 308.93027 * 12 11 10 15 15 C 1.81396 * 104.44756 * 65.00065 * 12 11 10 16 16 C 1.53001 * 109.47301 * 180.02562 * 15 12 11 17 17 C 1.52994 * 109.47580 * 179.97438 * 16 15 12 18 18 Cl 1.80302 * 109.47313 * 179.97438 * 17 16 15 19 19 C 1.53001 * 117.50004 * 129.31969 * 9 7 2 20 20 C 1.53005 * 117.50245 * 60.65787 * 9 7 2 21 21 H 0.96996 * 120.00045 * 5.00631 * 1 2 3 22 22 H 1.09003 * 109.47066 * 54.32894 * 10 9 7 23 23 H 1.09002 * 109.47448 * 174.32687 * 10 9 7 24 24 H 0.97000 * 120.00213 * 339.13692 * 11 10 9 25 25 H 1.09007 * 109.46979 * 299.99967 * 15 12 11 26 26 H 1.08998 * 109.47672 * 59.99974 * 15 12 11 27 27 H 1.09003 * 109.46937 * 300.00584 * 16 15 12 28 28 H 1.09007 * 109.47023 * 59.99319 * 16 15 12 29 29 H 1.08998 * 109.46772 * 300.00015 * 17 16 15 30 30 H 1.08997 * 109.46659 * 59.99805 * 17 16 15 31 31 H 1.08991 * 117.49791 * 359.97438 * 19 9 7 32 32 H 1.09007 * 117.49553 * 145.02396 * 19 9 7 33 33 H 1.08993 * 117.50038 * 214.98204 * 20 9 7 34 34 H 1.08998 * 117.48996 * 359.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0818 -1.1956 -0.0763 9 6 1.2545 -2.4971 0.1021 10 6 0.9144 -2.9538 1.5223 11 7 2.1508 -3.2588 2.2464 12 16 2.1586 -3.2728 3.9024 13 8 3.5044 -3.5750 4.2439 14 8 1.5717 -2.0309 4.2661 15 6 1.0642 -4.6489 4.3485 16 6 0.9872 -4.7661 5.8721 17 6 0.0637 -5.9264 6.2484 18 17 -0.0264 -6.0649 8.0439 19 6 1.5761 -3.5797 -0.9301 20 6 0.2485 -2.8214 -1.0041 21 1 -0.4850 0.8368 -0.0733 22 1 0.3765 -2.1597 2.0402 23 1 0.2900 -3.8461 1.4773 24 1 2.9649 -3.4525 1.7559 25 1 0.0673 -4.4650 3.9478 26 1 1.4578 -5.5761 3.9319 27 1 1.9840 -4.9497 6.2732 28 1 0.5933 -3.8388 6.2884 29 1 -0.9330 -5.7422 5.8474 30 1 0.4572 -6.8536 5.8321 31 1 2.3299 -3.3493 -1.6828 32 1 1.5450 -4.6173 -0.5974 33 1 -0.6554 -3.3603 -0.7202 34 1 0.1289 -2.0919 -1.8051 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404178302.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:35 Heat of formation + Delta-G solvation = -72.986284 kcal Electronic energy + Delta-G solvation = -18237.262896 eV Core-core repulsion = 15130.510507 eV Total energy + Delta-G solvation = -3106.752389 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.064 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.13929 -36.69187 -36.59007 -35.59269 -34.56654 -33.35002 -31.91310 -27.58440 -26.01102 -24.88901 -22.34505 -21.17798 -19.40621 -18.88272 -17.26577 -16.63232 -16.29084 -16.02358 -15.25806 -14.63408 -14.45262 -14.21593 -13.75484 -13.50100 -13.43454 -13.12660 -12.31633 -12.16627 -12.05765 -11.75815 -11.63401 -11.55775 -11.28501 -11.08143 -10.95241 -10.90300 -10.65125 -10.50199 -10.42659 -10.25540 -9.56050 -9.18721 -8.65868 -8.45347 -8.18380 -6.04781 -4.12066 0.51085 1.94898 3.14804 3.31001 3.39561 3.43518 4.02099 4.24821 4.39651 4.41142 4.48973 4.56111 4.99507 5.04339 5.23366 5.25127 5.28504 5.46925 5.63257 5.81368 6.16867 6.19148 6.28996 6.43974 6.65444 6.96391 7.04358 7.35092 7.53008 7.64894 7.86479 8.36453 8.88299 9.54907 11.02923 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.024676 B = 0.004370 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.446188 B = 6405.864162 C = 6766.985018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.073 3.927 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.494 4.494 8 H 0.060 0.940 9 C 0.034 3.966 10 C 0.155 3.845 11 N -1.095 6.095 12 S 2.612 3.388 13 O -0.969 6.969 14 O -0.946 6.946 15 C -0.643 4.643 16 C -0.123 4.123 17 C -0.023 4.023 18 Cl -0.187 7.187 19 C -0.212 4.212 20 C -0.145 4.145 21 H 0.261 0.739 22 H 0.083 0.917 23 H 0.032 0.968 24 H 0.416 0.584 25 H 0.135 0.865 26 H 0.133 0.867 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.190 -12.368 8.412 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.531 4.531 8 H 0.078 0.922 9 C 0.032 3.968 10 C 0.029 3.971 11 N -0.856 5.856 12 S 2.702 3.298 13 O -0.959 6.959 14 O -0.936 6.936 15 C -0.770 4.770 16 C -0.162 4.162 17 C -0.087 4.087 18 Cl -0.161 7.161 19 C -0.249 4.249 20 C -0.184 4.184 21 H 0.071 0.929 22 H 0.101 0.899 23 H 0.050 0.950 24 H 0.251 0.749 25 H 0.154 0.846 26 H 0.152 0.848 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.078 -11.623 9.289 14.918 hybrid contribution 0.168 0.227 -0.517 0.590 sum -0.910 -11.396 8.772 14.410 Atomic orbital electron populations 1.69959 1.05841 1.26887 1.48794 1.24951 0.94865 0.98986 0.94260 0.86634 0.80224 0.83546 0.77923 1.20788 1.21048 1.19665 1.20340 0.92714 0.88495 1.51565 0.92203 1.18932 0.98994 0.93424 0.85447 1.21006 0.83053 0.97260 0.95758 1.55165 1.19724 1.86550 1.24122 1.04875 0.74862 0.76154 0.73874 1.93566 1.32887 1.86244 1.83178 1.93630 1.79709 1.37692 1.82557 1.30784 1.19332 1.22977 1.03905 1.21595 1.02070 1.00386 0.92103 1.24352 1.02920 1.00994 0.80402 1.98727 1.99085 1.98709 1.19532 1.23028 1.00702 0.95476 1.05708 1.22500 0.90654 1.01407 1.03799 0.92922 0.89905 0.94965 0.74902 0.84643 0.84828 0.89170 0.88986 0.88285 0.88432 0.90357 0.91709 0.91898 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.14 12.66 55.43 0.70 -23.44 16 2 C 0.07 1.96 5.43 -17.82 -0.10 1.87 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.49 -12.86 8.75 -34.44 -0.30 -13.16 16 8 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 9 C 0.03 0.76 1.49 -155.66 -0.23 0.53 16 10 C 0.16 3.03 6.00 -4.04 -0.02 3.00 16 11 N -1.10 -18.72 5.77 -10.61 -0.06 -18.79 16 12 S 2.61 40.67 5.46 -107.50 -0.59 40.08 16 13 O -0.97 -17.09 18.08 -57.54 -1.04 -18.13 16 14 O -0.95 -18.91 17.43 -57.54 -1.00 -19.92 16 15 C -0.64 -6.48 6.07 37.16 0.23 -6.25 16 16 C -0.12 -1.18 5.35 -26.73 -0.14 -1.32 16 17 C -0.02 -0.18 6.66 37.15 0.25 0.07 16 18 Cl -0.19 -1.83 29.15 -51.86 -1.51 -3.34 16 19 C -0.21 -4.15 9.96 -26.69 -0.27 -4.41 16 20 C -0.14 -3.12 9.15 -26.69 -0.24 -3.37 16 21 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 22 H 0.08 1.84 7.60 -51.93 -0.39 1.44 16 23 H 0.03 0.52 8.09 -51.93 -0.42 0.10 16 24 H 0.42 6.87 8.66 -34.48 -0.30 6.57 16 25 H 0.14 1.20 8.14 -51.92 -0.42 0.78 16 26 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 LS Contribution 320.14 15.07 4.82 4.82 Total: -1.00 -32.07 320.14 -9.42 -41.49 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -4.89 Total: 4.01 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -0.83 Total: -23.04 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.64 Total: -42.23 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -2.04 Total: -38.05 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 40.67 SS G_CDS: -0.59 Total: 40.08 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -1.51 Total: -3.34 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.07 -9.42 -41.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404178302.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.497 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds