Wall clock time and date at job start Tue Mar 31 2020 05:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47079 * 2 1 4 4 C 1.46903 * 111.00063 * 75.88943 * 3 2 1 5 5 C 1.50695 * 109.47185 * 195.61240 * 4 3 2 6 6 H 1.08004 * 119.99964 * 355.26249 * 5 4 3 7 7 C 1.37873 * 120.00084 * 175.26082 * 5 4 3 8 8 N 1.31512 * 120.00365 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00017 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47557 * 89.99880 * 9 7 5 11 11 H 1.48498 * 109.47050 * 210.00101 * 9 7 5 12 12 H 1.48501 * 109.47107 * 330.00152 * 9 7 5 13 13 C 1.40728 * 110.99730 * 199.84169 * 3 2 1 14 14 C 1.37793 * 122.46064 * 295.75186 * 13 3 2 15 15 C 1.36545 * 114.39654 * 179.81769 * 14 13 3 16 16 C 1.43208 * 125.29682 * 180.19239 * 15 14 13 17 17 N 6.32678 * 174.65789 * 80.35108 * 2 1 3 18 18 S 1.75864 * 109.40740 * 0.43137 * 15 14 13 19 19 C 1.34319 * 122.46521 * 116.04674 * 13 3 2 20 20 N 1.48062 * 125.00893 * 359.97438 * 19 13 3 21 21 O 1.21799 * 119.99940 * 359.97438 * 20 19 13 22 22 O 1.21798 * 119.99803 * 180.02562 * 20 19 13 23 23 H 1.09005 * 109.47100 * 302.14192 * 1 2 3 24 24 H 1.09001 * 109.46769 * 62.13650 * 1 2 3 25 25 H 1.08994 * 109.47486 * 182.14029 * 1 2 3 26 26 H 1.08997 * 109.47372 * 240.00283 * 2 1 3 27 27 H 1.08999 * 109.47096 * 119.99613 * 2 1 3 28 28 H 1.09001 * 109.46679 * 315.60847 * 4 3 2 29 29 H 1.08996 * 109.47328 * 75.61204 * 4 3 2 30 30 H 0.96994 * 120.00327 * 179.97438 * 8 7 5 31 31 H 1.07999 * 122.80670 * 0.02562 * 14 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8799 1.9928 1.3301 5 6 2.0210 3.4888 1.2161 6 1 2.2727 3.9367 0.2660 7 6 1.8288 4.2858 2.3245 8 7 1.5218 3.7407 3.4813 9 14 2.0030 6.1403 2.1831 10 1 0.6881 6.7360 1.8346 11 1 2.4693 6.6940 3.4797 12 1 2.9902 6.4653 1.1224 13 6 3.3529 1.4485 -0.4459 14 6 4.3920 0.8620 0.2433 15 6 5.6165 1.0218 -0.3393 16 6 6.8505 0.5070 0.1737 17 7 7.8293 0.0987 0.5807 18 16 5.4435 1.9639 -1.8142 19 6 3.7069 2.0901 -1.5716 20 7 2.7722 2.7992 -2.4749 21 8 1.5820 2.8290 -2.2182 22 8 3.1936 3.3518 -3.4752 23 1 -0.3633 0.5468 0.8702 24 1 -0.3633 0.4803 -0.9085 25 1 -0.3634 -1.0269 0.0384 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.8990 1.7505 1.7389 29 1 2.6550 1.6041 1.9905 30 1 1.3869 4.3014 4.2612 31 1 4.2494 0.3183 1.1655 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407213166.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:48 Heat of formation + Delta-G solvation = 78.239360 kcal Electronic energy + Delta-G solvation = -19719.393566 eV Core-core repulsion = 16518.091319 eV Total energy + Delta-G solvation = -3201.302247 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.54700 -39.52722 -37.06117 -35.94237 -35.29717 -32.80547 -31.13158 -29.84286 -27.35746 -25.97433 -23.82590 -22.94311 -21.90522 -20.09355 -19.39221 -18.28467 -17.13341 -17.05265 -16.74268 -16.22070 -15.19914 -15.11261 -14.43338 -14.08948 -13.93751 -13.60002 -13.26353 -13.01832 -12.53053 -12.40136 -11.81265 -11.69305 -11.49180 -11.31074 -11.07888 -11.01033 -10.78593 -10.74465 -10.60621 -10.51028 -10.04112 -9.50308 -9.32664 -8.71598 -8.59967 -7.91437 -6.19483 -4.20986 -0.43297 0.40982 1.15473 1.23384 1.94738 2.21772 2.52497 2.95815 3.25704 3.32084 3.35799 3.46335 4.19461 4.41059 4.76732 5.04689 5.18247 5.32255 5.38876 5.58801 5.80169 5.84106 6.09646 6.35323 6.63658 6.72264 6.85354 6.88372 7.04953 7.48921 7.72903 7.85375 8.14153 8.17928 8.83426 9.43919 10.90659 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.012401 B = 0.007441 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.329366 B = 3761.867403 C = 4016.596669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.058 3.942 3 N -0.486 5.486 4 C 0.195 3.805 5 C -0.509 4.509 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.209 3.791 14 C -0.092 4.092 15 C -0.109 4.109 16 C 0.282 3.718 17 N -0.385 5.385 18 S 0.295 5.705 19 C -0.155 4.155 20 N 0.063 4.937 21 O -0.067 6.067 22 O -0.210 6.210 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.054 0.946 29 H -0.001 1.001 30 H 0.264 0.736 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.290 -7.597 -7.925 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.069 4.069 3 N -0.210 5.210 4 C 0.072 3.928 5 C -0.547 4.547 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.099 3.901 14 C -0.132 4.132 15 C -0.232 4.232 16 C -0.034 4.034 17 N -0.063 5.063 18 S 0.562 5.438 19 C -0.359 4.359 20 N 0.587 4.413 21 O -0.304 6.304 22 O -0.408 6.408 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.017 0.983 30 H 0.074 0.926 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.043 -7.639 -8.270 13.280 hybrid contribution -1.041 0.562 1.471 1.888 sum 6.001 -7.077 -6.799 11.503 Atomic orbital electron populations 1.21719 0.93893 1.00596 1.03795 1.22080 0.97325 0.87637 0.99840 1.60495 1.10299 1.17198 1.32997 1.20050 0.98036 0.94860 0.79815 1.21005 1.47743 0.90517 0.95461 0.92262 1.24897 0.94966 0.99017 0.95119 1.69915 1.47587 1.35714 1.00053 0.86531 0.78789 0.85086 0.77338 1.20155 1.21175 1.19939 1.17727 0.93028 0.90062 0.89315 1.21210 0.89503 1.00864 1.01641 1.20304 0.91490 1.08504 1.02862 1.24024 0.91542 0.93817 0.94050 1.81305 1.09620 1.08218 1.07115 1.84375 0.94775 1.47548 1.17132 1.26164 0.95126 1.13220 1.01368 1.42195 1.01057 0.98657 0.99397 1.94670 0.96588 1.61814 1.77279 1.94520 1.82360 1.47229 1.16693 0.91570 0.91512 0.92982 0.92128 0.94457 0.92785 0.98297 0.92647 0.81349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 10.05 37.16 0.37 -1.67 16 2 C 0.06 0.87 5.38 -3.82 -0.02 0.85 16 3 N -0.49 -9.11 3.05 -173.87 -0.53 -9.64 16 4 C 0.19 4.42 4.48 -4.98 -0.02 4.40 16 5 C -0.51 -13.28 8.87 -34.44 -0.31 -13.59 16 6 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 9 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.21 3.55 3.91 -85.31 -0.33 3.22 16 14 C -0.09 -1.32 8.90 -40.36 -0.36 -1.68 16 15 C -0.11 -1.39 6.31 -38.26 -0.24 -1.63 16 16 C 0.28 3.64 15.82 -22.47 -0.36 3.28 16 17 N -0.39 -5.48 18.54 41.84 0.78 -4.71 16 18 S 0.30 3.74 23.07 -107.50 -2.48 1.26 16 19 C -0.16 -2.62 7.52 -10.99 -0.08 -2.70 16 20 N 0.06 1.21 4.46 33.58 0.15 1.36 16 21 O -0.07 -1.38 17.84 -29.46 -0.53 -1.90 16 22 O -0.21 -3.90 19.07 -29.46 -0.56 -4.46 16 23 H 0.07 1.07 6.71 -51.93 -0.35 0.72 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.80 7.92 -51.93 -0.41 0.39 16 27 H 0.04 0.52 8.00 -51.93 -0.42 0.11 16 28 H 0.05 1.31 6.52 -51.93 -0.34 0.97 16 29 H 0.00 -0.02 7.06 -51.93 -0.37 -0.38 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.17 2.19 7.69 -52.49 -0.40 1.79 16 LS Contribution 303.08 15.07 4.57 4.57 Total: -1.00 -28.63 303.08 -7.00 -35.63 By element: Atomic # 1 Polarization: -3.63 SS G_CDS: -2.67 Total: -6.30 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -1.44 Total: -7.94 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 1.13 Total: -37.03 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -1.09 Total: -6.37 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -2.48 Total: 1.26 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.63 -7.00 -35.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407213166.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.872 kcal (2) G-P(sol) polarization free energy of solvation -28.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds