Wall clock time and date at job start Tue Mar 31 2020 05:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00127 * 2 1 4 4 H 1.48494 * 109.47144 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46940 * 299.99955 * 3 2 1 6 6 H 1.48507 * 109.47004 * 59.99535 * 3 2 1 7 7 C 1.37873 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00320 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99798 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.47193 * 179.97438 * 9 7 2 11 11 S 1.65595 * 119.99876 * 165.00215 * 10 9 7 12 12 O 1.42105 * 106.40149 * 178.54167 * 11 10 9 13 13 O 1.42098 * 106.40317 * 311.46040 * 11 10 9 14 14 C 1.76204 * 107.21987 * 65.00402 * 11 10 9 15 15 C 1.38233 * 119.99533 * 269.72685 * 14 11 10 16 16 C 1.38242 * 119.99838 * 179.79085 * 15 14 11 17 17 C 1.38233 * 119.99783 * 0.43555 * 16 15 14 18 18 C 1.50701 * 119.99932 * 179.84003 * 17 16 15 19 19 C 1.53001 * 117.49749 * 8.72339 * 18 17 16 20 20 C 1.52997 * 117.49612 * 300.06217 * 18 17 16 21 21 C 1.38236 * 119.99992 * 359.81512 * 17 16 15 22 22 C 1.38226 * 120.00179 * 89.99674 * 14 11 10 23 23 H 0.97005 * 120.00292 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47277 * 60.00300 * 9 7 2 25 25 H 1.08993 * 109.47815 * 300.00096 * 9 7 2 26 26 H 0.96997 * 120.00091 * 345.00187 * 10 9 7 27 27 H 1.08007 * 120.00465 * 359.97438 * 15 14 11 28 28 H 1.08001 * 119.99794 * 180.27551 * 16 15 14 29 29 H 1.09001 * 115.55095 * 154.39688 * 18 17 16 30 30 H 1.08995 * 117.50037 * 359.97438 * 19 18 17 31 31 H 1.08998 * 117.49552 * 145.02306 * 19 18 17 32 32 H 1.08998 * 117.49812 * 214.97760 * 20 18 17 33 33 H 1.09000 * 117.50029 * 359.97438 * 20 18 17 34 34 H 1.07999 * 120.00199 * 180.02562 * 21 17 16 35 35 H 1.07994 * 120.00174 * 359.97438 * 22 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 16 1.6881 -5.1422 0.3717 12 8 2.8237 -5.9880 0.2517 13 8 0.9250 -5.0301 1.5651 14 6 0.5646 -5.6355 -0.8929 15 6 -0.7862 -5.3752 -0.7572 16 6 -1.6672 -5.7584 -1.7512 17 6 -1.1985 -6.4099 -2.8767 18 6 -2.1593 -6.8308 -3.9587 19 6 -3.6024 -6.3332 -3.8547 20 6 -3.2766 -7.8020 -3.5725 21 6 0.1517 -6.6747 -3.0100 22 6 1.0332 -6.2877 -2.0179 23 1 -0.4851 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8902 26 1 3.1349 -3.4541 -0.2169 27 1 -1.1531 -4.8699 0.1241 28 1 -2.7221 -5.5511 -1.6472 29 1 -1.7309 -6.9275 -4.9563 30 1 -3.8569 -5.7018 -3.0035 31 1 -4.1235 -6.1029 -4.7839 32 1 -3.5836 -8.5374 -4.3162 33 1 -3.3165 -8.1369 -2.5360 34 1 0.5180 -7.1833 -3.8895 35 1 2.0880 -6.4946 -2.1221 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451456901.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:32 Heat of formation + Delta-G solvation = -31.667939 kcal Electronic energy + Delta-G solvation = -19400.702650 eV Core-core repulsion = 16298.174808 eV Total energy + Delta-G solvation = -3102.527842 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.67351 -36.85891 -36.69213 -35.30997 -34.61607 -32.15526 -31.06472 -30.72376 -26.74145 -24.35617 -23.04120 -22.52399 -22.29470 -20.61851 -19.02976 -17.77447 -17.30562 -16.37663 -15.94112 -15.59750 -15.13385 -14.76994 -14.65751 -14.25154 -13.50939 -13.49934 -13.17294 -13.02647 -12.58613 -12.13013 -11.84909 -11.80808 -11.71967 -11.57062 -11.47961 -11.21842 -10.99287 -10.94334 -10.72393 -10.62074 -10.40771 -10.12843 -9.42819 -8.96488 -8.91336 -8.83516 -8.23356 -6.18804 -4.23223 0.81105 1.10008 1.42401 3.24082 3.29160 3.31900 3.35782 3.72952 3.90001 4.28132 4.33616 4.34492 4.61391 4.68578 4.76314 4.92168 5.00575 5.16028 5.19062 5.34439 5.43644 5.58011 5.59676 5.79869 5.84048 5.87914 6.04874 6.24921 6.27797 6.44491 6.49554 6.93599 7.27982 7.33693 7.79185 7.80452 8.17160 8.81261 9.41864 10.91686 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.005050 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.748911 B = 5543.262070 C = 6619.225471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.067 0.933 9 C 0.245 3.755 10 N -1.103 6.103 11 S 2.691 3.309 12 O -0.981 6.981 13 O -0.963 6.963 14 C -0.672 4.672 15 C -0.007 4.007 16 C -0.144 4.144 17 C -0.005 4.005 18 C -0.126 4.126 19 C -0.174 4.174 20 C -0.167 4.167 21 C -0.141 4.141 22 C -0.017 4.017 23 H 0.265 0.735 24 H 0.022 0.978 25 H 0.039 0.961 26 H 0.411 0.589 27 H 0.143 0.857 28 H 0.130 0.870 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 -12.991 -8.003 15.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.569 4.569 8 H 0.085 0.915 9 C 0.122 3.878 10 N -0.865 5.865 11 S 2.779 3.221 12 O -0.971 6.971 13 O -0.953 6.953 14 C -0.758 4.758 15 C -0.027 4.027 16 C -0.163 4.163 17 C -0.005 4.005 18 C -0.144 4.144 19 C -0.211 4.211 20 C -0.204 4.204 21 C -0.160 4.160 22 C -0.036 4.036 23 H 0.075 0.925 24 H 0.040 0.960 25 H 0.057 0.943 26 H 0.245 0.755 27 H 0.161 0.839 28 H 0.148 0.852 29 H 0.134 0.866 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.146 0.854 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.782 -13.401 -7.242 15.965 hybrid contribution 0.311 1.163 -0.898 1.502 sum -4.471 -12.238 -8.140 15.363 Atomic orbital electron populations 1.69944 1.06066 1.27236 1.49617 1.24968 0.94973 0.99464 0.94779 0.86360 0.79980 0.82896 0.77700 1.19571 1.20878 1.20772 1.21239 0.93518 0.89890 1.52207 0.91524 1.19098 0.87823 0.83546 0.97315 1.55439 1.19564 1.23761 1.87762 1.01816 0.73229 0.72847 0.74210 1.93520 1.49632 1.66638 1.87341 1.93560 1.72653 1.86373 1.42739 1.31168 1.11245 1.14998 1.18378 1.20992 0.91268 0.92430 0.97969 1.21140 1.00278 1.00679 0.94177 1.19384 0.93540 0.94108 0.93498 1.21134 0.89450 1.05426 0.98407 1.23117 0.96836 0.97162 1.03972 1.23045 1.01416 0.92981 1.02953 1.20988 0.92642 1.02540 0.99790 1.20865 1.00154 0.91720 0.90845 0.92522 0.96029 0.94323 0.75512 0.83934 0.85193 0.86636 0.87949 0.88232 0.88341 0.88413 0.85402 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 13.29 55.43 0.74 -24.56 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.16 9.27 -34.44 -0.32 -14.48 16 8 H 0.07 1.71 7.65 -52.49 -0.40 1.31 16 9 C 0.25 6.06 5.98 -5.19 -0.03 6.03 16 10 N -1.10 -22.49 5.99 -11.65 -0.07 -22.56 16 11 S 2.69 51.00 5.74 -107.50 -0.62 50.38 16 12 O -0.98 -19.22 17.28 -57.17 -0.99 -20.21 16 13 O -0.96 -20.94 16.75 -57.17 -0.96 -21.90 16 14 C -0.67 -11.43 5.95 -39.59 -0.24 -11.66 16 15 C -0.01 -0.12 9.52 -39.58 -0.38 -0.50 16 16 C -0.14 -2.03 9.30 -39.58 -0.37 -2.40 16 17 C -0.01 -0.07 5.61 -104.62 -0.59 -0.65 16 18 C -0.13 -1.26 6.04 -91.77 -0.55 -1.81 16 19 C -0.17 -1.54 9.86 -26.69 -0.26 -1.80 16 20 C -0.17 -1.40 10.17 -26.69 -0.27 -1.68 16 21 C -0.14 -1.84 9.74 -39.58 -0.39 -2.22 16 22 C -0.02 -0.25 9.52 -39.59 -0.38 -0.63 16 23 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.04 1.03 7.75 -51.93 -0.40 0.63 16 26 H 0.41 7.62 8.54 -34.47 -0.29 7.33 16 27 H 0.14 2.34 7.61 -52.48 -0.40 1.94 16 28 H 0.13 1.53 6.02 -52.49 -0.32 1.22 16 29 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.10 0.93 6.18 -51.93 -0.32 0.61 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.14 1.84 7.62 -52.49 -0.40 1.44 16 LS Contribution 314.77 15.07 4.74 4.74 Total: -1.00 -32.33 314.77 -10.25 -42.58 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.21 Total: 6.02 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: -3.87 Total: -30.23 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.67 Total: -47.12 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -1.95 Total: -42.11 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 51.00 SS G_CDS: -0.62 Total: 50.38 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.33 -10.25 -42.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451456901.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.909 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds