Wall clock time and date at job start Tue Mar 31 2020 05:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 119.99997 * 2 1 4 4 H 1.48495 * 109.47263 * 239.99734 * 3 2 1 5 5 H 1.48497 * 109.47163 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47096 * 119.99911 * 3 2 1 7 7 C 1.38799 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00306 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00047 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47177 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99888 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00268 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00263 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47102 * 180.02562 * 14 13 11 16 16 C 1.38258 * 119.99734 * 260.01749 * 15 14 13 17 17 C 1.38213 * 120.00082 * 179.97438 * 16 15 14 18 18 C 1.38263 * 119.99986 * 0.02562 * 17 16 15 19 19 C 1.38215 * 119.99577 * 359.70149 * 18 17 16 20 20 C 1.38209 * 120.00423 * 79.99836 * 15 14 13 21 21 C 1.50701 * 119.99797 * 0.02562 * 20 15 14 22 22 O 1.42903 * 109.46878 * 179.97438 * 21 20 15 23 23 H 0.96995 * 120.00269 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47306 * 59.99748 * 10 9 7 25 25 H 1.09002 * 109.46744 * 299.99732 * 10 9 7 26 26 H 0.97001 * 119.99949 * 0.02562 * 13 11 10 27 27 H 1.09000 * 109.47273 * 59.99796 * 14 13 11 28 28 H 1.09002 * 109.47004 * 299.99640 * 14 13 11 29 29 H 1.08002 * 120.00011 * 0.02562 * 16 15 14 30 30 H 1.07994 * 120.00169 * 180.02562 * 17 16 15 31 31 H 1.07998 * 119.99986 * 179.97438 * 18 17 16 32 32 H 1.08004 * 119.99524 * 180.29857 * 19 18 17 33 33 H 1.09002 * 109.47060 * 299.99979 * 21 20 15 34 34 H 1.09001 * 109.47380 * 60.00066 * 21 20 15 35 35 H 0.96700 * 113.99509 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8441 -6.3431 0.0022 14 6 2.3304 -7.7151 0.0024 15 6 3.4849 -8.6837 0.0036 16 6 3.8818 -9.2875 -1.1752 17 6 4.9410 -10.1755 -1.1742 18 6 5.6032 -10.4604 0.0056 19 6 5.2099 -9.8525 1.1829 20 6 4.1471 -8.9683 1.1829 21 6 3.7143 -8.3103 2.4677 22 8 4.5459 -8.7627 3.5382 23 1 -0.4850 0.8400 0.0004 24 1 3.1238 -3.7310 0.8925 25 1 3.1251 -3.7317 -0.8875 26 1 3.8009 -6.1835 0.0032 27 1 1.7220 -7.8754 -0.8877 28 1 1.7216 -7.8750 0.8923 29 1 3.3648 -9.0646 -2.0968 30 1 5.2513 -10.6468 -2.0950 31 1 6.4305 -11.1546 0.0064 32 1 5.7303 -10.0714 2.1037 33 1 3.8037 -7.2283 2.3699 34 1 2.6773 -8.5716 2.6784 35 1 4.3242 -8.3789 4.3976 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532162111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:07 Heat of formation + Delta-G solvation = -68.064670 kcal Electronic energy + Delta-G solvation = -18625.842495 eV Core-core repulsion = 15521.736373 eV Total energy + Delta-G solvation = -3104.106122 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.15585 -38.86760 -36.87676 -34.86331 -32.44018 -31.99703 -31.46650 -29.29225 -26.57953 -25.69158 -25.29383 -22.19022 -21.03771 -20.42072 -17.97107 -17.68841 -16.90096 -16.30623 -15.92480 -15.52821 -15.19477 -14.88155 -14.81150 -14.74960 -14.02945 -13.94464 -13.31973 -13.10681 -12.94398 -12.71046 -12.52493 -12.33850 -11.81823 -11.25202 -11.06764 -11.05398 -11.04367 -10.77695 -10.61658 -9.84117 -9.58960 -9.07653 -9.03715 -8.92477 -8.86026 -8.25687 -6.51519 -6.22607 -3.93503 0.97099 1.14932 3.02330 3.06009 3.22918 3.26593 3.29425 3.48886 3.85552 3.85768 4.19599 4.46573 4.56913 4.76744 4.83065 5.03159 5.11214 5.12491 5.16797 5.20666 5.35051 5.49300 5.56616 5.68066 5.80071 5.84046 5.87117 6.12352 6.19455 6.27113 6.36888 6.53969 6.72872 7.30988 7.58294 7.67060 8.34028 8.56878 9.22601 10.84773 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027990 B = 0.003194 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.104293 B = 8763.846653 C = 8964.155845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.735 5.735 14 C 0.160 3.840 15 C -0.101 4.101 16 C -0.100 4.100 17 C -0.123 4.123 18 C -0.117 4.117 19 C -0.100 4.100 20 C -0.073 4.073 21 C 0.113 3.887 22 O -0.572 6.572 23 H 0.269 0.731 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.399 0.601 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.400 -19.801 2.002 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.390 5.390 14 C 0.036 3.964 15 C -0.101 4.101 16 C -0.118 4.118 17 C -0.141 4.141 18 C -0.135 4.135 19 C -0.118 4.118 20 C -0.074 4.074 21 C 0.035 3.965 22 O -0.378 6.378 23 H 0.079 0.921 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.233 0.767 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 9.470 -20.358 1.516 22.503 hybrid contribution 2.196 1.618 0.370 2.753 sum 11.665 -18.739 1.886 22.154 Atomic orbital electron populations 1.70004 1.05954 1.27594 1.46753 1.24989 0.95027 0.99022 0.94499 0.86223 0.79238 0.81217 0.78818 1.19920 1.20804 1.19934 1.22833 0.94891 0.91672 1.59117 0.90966 1.85388 1.04860 0.96290 1.96732 1.23534 1.06607 0.95276 1.04974 1.20346 0.86498 0.86227 0.75135 1.90709 1.15317 1.85555 1.47496 1.46087 1.10083 1.04865 1.77972 1.20124 0.93190 0.79853 1.03228 1.19660 0.98057 0.99443 0.92989 1.21072 0.96921 0.96478 0.97336 1.21179 0.96250 0.98435 0.98273 1.21238 0.99830 0.99736 0.92745 1.21006 0.96331 0.95901 0.98531 1.19617 0.96427 0.97854 0.93513 1.20959 0.93296 0.97406 0.84807 1.86381 1.59818 1.71992 1.19604 0.92109 0.89241 0.89170 0.76704 0.90548 0.90770 0.85500 0.85883 0.85975 0.84947 0.91615 0.91901 0.76729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 11 C 0.53 9.72 7.85 -10.99 -0.09 9.63 16 12 O -0.52 -11.51 15.86 5.55 0.09 -11.42 16 13 N -0.74 -9.77 5.35 -61.47 -0.33 -10.10 16 14 C 0.16 1.90 5.21 -5.19 -0.03 1.87 16 15 C -0.10 -1.05 5.25 -104.63 -0.55 -1.60 16 16 C -0.10 -0.94 9.67 -39.58 -0.38 -1.33 16 17 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 18 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 19 C -0.10 -1.00 9.38 -39.58 -0.37 -1.37 16 20 C -0.07 -0.77 5.88 -104.63 -0.62 -1.38 16 21 C 0.11 1.08 6.28 36.01 0.23 1.31 16 22 O -0.57 -5.09 12.14 -35.23 -0.43 -5.52 16 23 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 25 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 26 H 0.40 4.45 8.46 -40.82 -0.35 4.11 16 27 H 0.08 0.94 8.01 -51.93 -0.42 0.53 16 28 H 0.07 0.91 7.06 -51.93 -0.37 0.54 16 29 H 0.13 1.06 8.04 -52.49 -0.42 0.63 16 30 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.13 1.29 7.01 -52.48 -0.37 0.92 16 33 H 0.07 0.64 7.94 -51.93 -0.41 0.23 16 34 H 0.06 0.58 7.55 -51.93 -0.39 0.18 16 35 H 0.39 1.83 9.12 45.56 0.42 2.25 16 LS Contribution 320.47 15.07 4.83 4.83 Total: -1.00 -34.84 320.47 -8.06 -42.90 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -3.54 Total: 3.68 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -2.18 Total: -11.50 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.40 Total: -35.45 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.34 Total: -16.94 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.84 -8.06 -42.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532162111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.166 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds