Wall clock time and date at job start Tue Mar 31 2020 05:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86795 * 120.00363 * 2 1 4 4 H 1.48506 * 109.47188 * 270.00063 * 3 2 1 5 5 H 1.48505 * 109.47138 * 29.99567 * 3 2 1 6 6 H 1.48496 * 109.47339 * 149.99784 * 3 2 1 7 7 C 1.40136 * 119.99654 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.41797 * 120.00024 * 359.97438 * 7 2 1 10 10 O 1.21768 * 119.99812 * 0.02562 * 9 7 2 11 11 N 1.34781 * 119.99692 * 179.97438 * 9 7 2 12 12 C 1.39557 * 119.99751 * 184.62105 * 11 9 7 13 13 C 1.39379 * 120.02192 * 144.90850 * 12 11 9 14 14 C 1.37701 * 120.51723 * 179.97438 * 13 12 11 15 15 C 1.39134 * 120.20380 * 0.02562 * 14 13 12 16 16 O 1.35158 * 132.19241 * 180.02562 * 15 14 13 17 17 C 1.35105 * 111.55914 * 179.97438 * 16 15 14 18 18 C 1.38998 * 132.27672 * 179.97438 * 17 16 15 19 19 C 1.37899 * 120.08661 * 179.97438 * 18 17 16 20 20 C 1.38584 * 120.60042 * 0.08354 * 19 18 17 21 21 C 1.37915 * 120.13686 * 359.95503 * 20 19 18 22 22 C 1.39077 * 119.73473 * 0.02562 * 21 20 19 23 23 C 1.40275 * 119.32093 * 0.02562 * 15 14 13 24 24 C 1.38752 * 120.02441 * 324.63903 * 12 11 9 25 25 H 0.97000 * 119.99786 * 0.02562 * 1 2 3 26 26 H 0.96991 * 119.99841 * 4.35165 * 11 9 7 27 27 H 1.08003 * 119.74563 * 0.02562 * 13 12 11 28 28 H 1.07996 * 119.89686 * 180.02562 * 14 13 12 29 29 H 1.07999 * 119.95796 * 0.03164 * 18 17 16 30 30 H 1.08001 * 119.69861 * 180.02562 * 19 18 17 31 31 H 1.08008 * 119.92963 * 179.97438 * 20 19 18 32 32 H 1.08000 * 120.13605 * 179.97438 * 21 20 19 33 33 H 1.08004 * 120.16403 * 359.97253 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 2.4879 2.0463 -1.4001 5 1 1.4378 2.6527 0.7000 6 1 3.5379 1.4401 0.7001 7 6 2.0069 -1.2137 0.0005 8 1 3.0869 -1.2137 0.0010 9 6 1.2978 -2.4416 0.0016 10 8 0.0802 -2.4415 0.0016 11 7 1.9717 -3.6089 0.0016 12 6 1.2772 -4.8155 -0.0947 13 6 1.8318 -5.8854 -0.7950 14 6 1.1557 -7.0807 -0.8960 15 6 -0.0916 -7.2320 -0.2984 16 8 -0.9516 -8.2733 -0.2435 17 6 -2.0629 -7.9628 0.4593 18 6 -3.2016 -8.6931 0.7788 19 6 -4.2055 -8.1159 1.5277 20 6 -4.0936 -6.8065 1.9676 21 6 -2.9715 -6.0661 1.6597 22 6 -1.9529 -6.6386 0.9054 23 6 -0.6511 -6.1555 0.4057 24 6 0.0367 -4.9528 0.5114 25 1 -0.4850 0.8401 -0.0004 26 1 2.9396 -3.6100 0.0646 27 1 2.7998 -5.7763 -1.2614 28 1 1.5950 -7.9032 -1.4407 29 1 -3.2999 -9.7142 0.4410 30 1 -5.0873 -8.6892 1.7727 31 1 -4.8866 -6.3651 2.5531 32 1 -2.8845 -5.0456 2.0022 33 1 -0.3941 -4.1276 1.0590 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548444419.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:13 Heat of formation + Delta-G solvation = 6.384867 kcal Electronic energy + Delta-G solvation = -20406.772127 eV Core-core repulsion = 17170.450427 eV Total energy + Delta-G solvation = -3236.321699 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.084 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.05955 -38.83369 -37.70329 -36.46801 -33.39121 -32.52710 -31.91572 -30.42506 -29.01896 -28.50524 -26.39105 -23.84432 -22.75405 -21.94243 -20.72712 -20.06624 -18.14542 -17.66633 -16.79220 -16.42228 -15.86934 -15.52773 -15.33535 -14.69828 -14.25800 -13.84830 -13.68971 -13.42531 -13.21358 -12.76348 -12.72921 -12.24139 -12.11961 -11.86164 -11.72791 -11.36580 -11.12506 -11.00896 -10.69665 -10.52611 -10.38129 -9.71013 -9.27046 -8.94666 -8.46292 -7.94057 -7.70077 -6.98739 -6.41784 -4.95109 0.91289 1.30536 1.99441 2.09862 2.86408 3.02486 3.10123 3.13392 3.78858 3.93960 4.16202 4.43119 4.48949 4.71757 4.83622 4.98095 5.12158 5.28309 5.35860 5.50746 5.61749 5.66077 5.76630 5.94425 6.00816 6.28916 6.33090 6.38378 6.53222 6.57708 6.76655 6.85714 6.92457 7.07410 7.20017 7.47462 7.79899 7.97550 8.12218 8.75938 9.22858 10.33442 10.53179 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.025321 B = 0.004294 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.557481 B = 6519.700706 C = 7527.865239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.088 3.912 3 Si 0.913 3.087 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.543 3.457 10 O -0.567 6.567 11 N -0.700 5.700 12 C 0.175 3.825 13 C -0.133 4.133 14 C -0.096 4.096 15 C 0.034 3.966 16 O -0.207 6.207 17 C 0.082 3.918 18 C -0.124 4.124 19 C -0.091 4.091 20 C -0.146 4.146 21 C -0.058 4.058 22 C -0.113 4.113 23 C -0.103 4.103 24 C -0.075 4.075 25 H 0.273 0.727 26 H 0.394 0.606 27 H 0.133 0.867 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 -12.266 2.070 12.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.352 3.648 10 O -0.451 6.451 11 N -0.344 5.344 12 C 0.076 3.924 13 C -0.154 4.154 14 C -0.115 4.115 15 C -0.012 4.012 16 O -0.112 6.112 17 C 0.036 3.964 18 C -0.142 4.142 19 C -0.109 4.109 20 C -0.164 4.164 21 C -0.076 4.076 22 C -0.114 4.114 23 C -0.104 4.104 24 C -0.096 4.096 25 H 0.084 0.916 26 H 0.227 0.773 27 H 0.151 0.849 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.981 -12.260 1.949 12.767 hybrid contribution 0.950 0.897 -0.093 1.310 sum -2.030 -11.363 1.857 11.691 Atomic orbital electron populations 1.70005 1.07304 1.27948 1.32192 1.25761 0.94653 1.00711 0.92380 0.86274 0.80191 0.80727 0.79091 1.19489 1.20213 1.18660 1.20042 0.94376 0.89917 1.52962 0.91095 1.17099 0.87632 0.82066 0.77994 1.90641 1.13600 1.85816 1.54994 1.44127 1.09520 1.03950 1.76788 1.17740 0.93221 0.87099 0.94346 1.20749 1.01341 0.92556 1.00745 1.19555 0.91038 0.98461 1.02486 1.19443 0.93056 0.85459 1.03217 1.83950 1.25643 1.37554 1.64061 1.19594 0.88150 0.93889 0.94809 1.19897 0.91117 1.00184 1.03041 1.20857 0.97767 0.95293 0.97028 1.20999 0.98258 0.94611 1.02572 1.20663 0.91626 1.00091 0.95263 1.19421 0.95288 0.94223 1.02423 1.19223 0.93971 0.95174 1.02035 1.20842 0.94516 0.95320 0.98937 0.91596 0.77280 0.84886 0.85379 0.85269 0.84998 0.85322 0.85062 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.22 11.73 55.55 0.65 -20.57 16 2 C 0.09 2.32 5.50 -17.35 -0.10 2.22 16 3 Si 0.91 18.99 29.56 -169.99 -5.02 13.96 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.54 -14.31 9.31 -37.51 -0.35 -14.66 16 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 9 C 0.54 14.73 7.41 -14.90 -0.11 14.62 16 10 O -0.57 -17.36 12.32 5.13 0.06 -17.30 16 11 N -0.70 -15.30 5.31 -12.40 -0.07 -15.37 16 12 C 0.18 3.63 6.30 -83.73 -0.53 3.10 16 13 C -0.13 -2.23 9.94 -39.35 -0.39 -2.62 16 14 C -0.10 -1.56 10.05 -39.45 -0.40 -1.95 16 15 C 0.03 0.63 7.34 -38.48 -0.28 0.35 16 16 O -0.21 -3.67 10.58 1.04 0.01 -3.66 16 17 C 0.08 1.38 7.34 -38.58 -0.28 1.09 16 18 C -0.12 -1.62 10.06 -39.42 -0.40 -2.02 16 19 C -0.09 -1.05 10.01 -39.58 -0.40 -1.44 16 20 C -0.15 -1.84 10.04 -39.57 -0.40 -2.24 16 21 C -0.06 -0.93 10.08 -39.39 -0.40 -1.32 16 22 C -0.11 -2.06 6.38 -105.06 -0.67 -2.73 16 23 C -0.10 -2.07 6.38 -105.06 -0.67 -2.74 16 24 C -0.07 -1.65 8.72 -39.13 -0.34 -1.99 16 25 H 0.27 7.00 8.29 -40.82 -0.34 6.67 16 26 H 0.39 7.21 8.78 -40.82 -0.36 6.86 16 27 H 0.13 1.82 8.06 -52.48 -0.42 1.39 16 28 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 32 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.15 3.72 6.24 -52.48 -0.33 3.39 16 LS Contribution 295.19 15.07 4.45 4.45 Total: -1.00 -32.86 295.19 -8.39 -41.25 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -2.77 Total: 9.58 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -5.70 Total: -12.34 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.59 Total: -35.94 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.07 Total: -20.96 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.86 -8.39 -41.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548444419.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.637 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds