Wall clock time and date at job start Tue Mar 31 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86801 * 119.99948 * 2 1 4 4 H 1.48494 * 109.47121 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47025 * 120.00025 * 3 2 1 6 6 H 1.48500 * 109.47050 * 239.99561 * 3 2 1 7 7 C 1.39946 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00182 * 151.89297 * 7 2 1 9 9 C 1.41393 * 119.99989 * 331.89917 * 7 2 1 10 10 C 1.40736 * 120.24215 * 335.74629 * 9 7 2 11 11 C 1.37598 * 119.74567 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24786 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.50284 * 359.97438 * 12 11 10 14 14 C 1.37646 * 120.24612 * 359.67623 * 13 12 11 15 15 S 1.76199 * 120.12950 * 180.31466 * 14 13 12 16 16 O 1.42106 * 106.40200 * 358.01086 * 15 14 13 17 17 O 1.42103 * 106.40102 * 130.92994 * 15 14 13 18 18 N 1.65600 * 107.22189 * 244.46947 * 15 14 13 19 19 C 1.46502 * 119.99773 * 64.83117 * 18 15 14 20 20 C 1.53785 * 113.61083 * 242.40098 * 19 18 15 21 21 C 1.53949 * 87.01957 * 220.04691 * 20 19 18 22 22 C 1.53778 * 113.61573 * 144.79686 * 19 18 15 23 23 H 0.97006 * 120.00097 * 174.62240 * 1 2 3 24 24 H 1.07991 * 120.12755 * 359.97438 * 10 9 7 25 25 H 1.07997 * 119.87998 * 180.02562 * 11 10 9 26 26 H 1.07997 * 119.75200 * 179.97438 * 12 11 10 27 27 H 1.08001 * 119.88189 * 179.97438 * 13 12 11 28 28 H 0.96997 * 119.99942 * 244.82524 * 18 15 14 29 29 H 1.09003 * 112.85292 * 13.59297 * 19 18 15 30 30 H 1.09000 * 113.61400 * 334.56832 * 20 19 18 31 31 H 1.09002 * 113.61194 * 105.46786 * 20 19 18 32 32 H 1.08996 * 113.53898 * 270.81488 * 21 20 19 33 33 H 1.09002 * 113.66723 * 139.93099 * 21 20 19 34 34 H 1.08995 * 113.61082 * 254.52734 * 22 19 18 35 35 H 1.08997 * 113.61513 * 25.34190 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2772 2.7464 -0.0006 5 1 3.0959 1.6964 1.2125 6 1 3.0960 1.6964 -1.2124 7 6 2.0079 -1.2119 0.0005 8 1 2.9925 -1.2673 -0.4401 9 6 1.4260 -2.3640 0.5778 10 6 0.4346 -2.2367 1.5685 11 6 -0.1245 -3.3648 2.1238 12 6 0.2859 -4.6233 1.7111 13 6 1.2615 -4.7606 0.7362 14 6 1.8294 -3.6461 0.1618 15 16 3.0635 -3.8242 -1.0832 16 8 3.2820 -5.2202 -1.2348 17 8 2.6760 -2.9772 -2.1564 18 7 4.4688 -3.1944 -0.4743 19 6 5.1150 -3.8255 0.6791 20 6 5.2000 -2.9123 1.9135 21 6 6.6117 -3.4833 2.1391 22 6 6.6511 -3.7734 0.6294 23 1 -0.4850 -0.8364 -0.0787 24 1 0.1144 -1.2575 1.8923 25 1 -0.8857 -3.2696 2.8839 26 1 -0.1580 -5.5033 2.1526 27 1 1.5739 -5.7458 0.4225 28 1 4.8640 -2.4076 -0.8814 29 1 4.7185 -4.8174 0.8962 30 1 5.1923 -1.8495 1.6718 31 1 4.4915 -3.1737 2.6996 32 1 6.6245 -4.3813 2.7566 33 1 7.3393 -2.7376 2.4595 34 1 7.1125 -4.7289 0.3802 35 1 7.0410 -2.9473 0.0347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601434378.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:46 Heat of formation + Delta-G solvation = -52.416805 kcal Electronic energy + Delta-G solvation = -20684.735036 eV Core-core repulsion = 17581.307456 eV Total energy + Delta-G solvation = -3103.427580 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.65338 -37.80471 -36.23912 -34.86992 -34.14182 -32.44675 -30.20093 -29.47893 -25.40701 -25.40027 -24.18826 -21.80370 -21.21596 -19.69924 -18.68021 -18.29028 -16.86929 -16.33395 -15.93472 -15.02548 -14.87810 -14.57652 -14.18428 -13.72147 -13.34479 -12.87232 -12.65303 -12.49023 -12.26314 -12.21543 -11.83479 -11.64982 -11.24372 -11.17065 -11.15842 -11.02927 -10.63433 -10.57551 -10.53965 -10.52075 -10.11597 -9.87821 -9.47871 -9.23631 -8.75129 -8.21086 -7.85797 -7.53493 -4.85291 1.51565 2.24804 2.65392 3.03551 3.15110 3.22615 3.82916 3.91105 4.29502 4.67748 4.76546 4.83642 5.01998 5.10013 5.17418 5.52568 5.59593 5.80705 5.92106 5.93691 5.98235 6.06034 6.15952 6.23570 6.30234 6.35231 6.62937 6.76440 6.90409 7.09089 7.28582 7.38064 7.47016 7.59857 7.64860 7.79688 7.97127 8.34027 8.55797 9.71414 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013657 B = 0.009156 C = 0.007446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.683574 B = 3057.351845 C = 3759.728779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.044 3.956 3 Si 1.061 2.939 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.493 4.493 8 H 0.087 0.913 9 C 0.166 3.834 10 C -0.215 4.215 11 C -0.054 4.054 12 C -0.268 4.268 13 C 0.014 3.986 14 C -0.782 4.782 15 S 2.699 3.301 16 O -1.000 7.000 17 O -0.969 6.969 18 N -1.109 6.109 19 C 0.137 3.863 20 C -0.151 4.151 21 C -0.143 4.143 22 C -0.145 4.145 23 H 0.304 0.696 24 H 0.110 0.890 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.411 0.589 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.910 -1.531 3.867 9.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.182 4.182 3 Si 0.883 3.117 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.520 4.520 8 H 0.105 0.895 9 C 0.161 3.839 10 C -0.235 4.235 11 C -0.073 4.073 12 C -0.289 4.289 13 C -0.006 4.006 14 C -0.877 4.877 15 S 2.797 3.203 16 O -0.990 6.990 17 O -0.959 6.959 18 N -0.863 5.863 19 C 0.029 3.971 20 C -0.191 4.191 21 C -0.181 4.181 22 C -0.185 4.185 23 H 0.118 0.882 24 H 0.128 0.872 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.244 0.756 29 H 0.128 0.872 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.475 -0.440 3.099 9.034 hybrid contribution -0.144 -1.205 0.602 1.355 sum 8.331 -1.646 3.701 9.264 Atomic orbital electron populations 1.70450 1.08397 1.34850 1.24867 1.27163 0.95496 1.04655 0.90879 0.83692 0.76030 0.73429 0.78526 1.19428 1.19500 1.19352 1.20894 1.04791 0.94815 1.31476 0.89469 1.16929 0.88808 0.90019 0.88190 1.21303 1.03438 0.97336 1.01388 1.20809 0.96493 0.93272 0.96745 1.20417 1.06111 0.96054 1.06275 1.20313 0.92498 0.95822 0.91958 1.29756 1.28831 0.99428 1.29724 1.01098 0.72789 0.72291 0.74167 1.93447 1.85978 1.32998 1.86605 1.93539 1.81870 1.67811 1.52680 1.55639 1.42843 1.43495 1.44322 1.22139 0.92812 0.96746 0.85445 1.23463 0.96368 1.00767 0.98453 1.22754 0.97939 1.01166 0.96238 1.23317 0.96186 1.02226 0.96760 0.88170 0.87213 0.88722 0.88633 0.87404 0.75553 0.87207 0.89230 0.90978 0.90218 0.91310 0.91212 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.20 12.32 55.55 0.68 -18.51 16 2 C 0.04 1.05 4.88 -17.34 -0.08 0.97 16 3 Si 1.06 20.09 30.01 -169.99 -5.10 14.99 16 4 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 6 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.49 -12.10 7.69 -37.74 -0.29 -12.39 16 8 H 0.09 2.01 5.62 -52.48 -0.30 1.72 16 9 C 0.17 4.10 5.30 -106.83 -0.57 3.54 16 10 C -0.21 -5.16 8.02 -38.87 -0.31 -5.47 16 11 C -0.05 -1.19 10.02 -39.66 -0.40 -1.59 16 12 C -0.27 -5.78 10.05 -39.29 -0.39 -6.17 16 13 C 0.01 0.31 9.54 -39.66 -0.38 -0.06 16 14 C -0.78 -18.46 5.93 -38.87 -0.23 -18.69 16 15 S 2.70 59.03 4.91 -107.50 -0.53 58.50 16 16 O -1.00 -22.85 16.50 -57.17 -0.94 -23.79 16 17 O -0.97 -24.20 16.57 -57.17 -0.95 -25.14 16 18 N -1.11 -19.34 4.90 -4.20 -0.02 -19.36 16 19 C 0.14 2.08 4.42 -67.12 -0.30 1.78 16 20 C -0.15 -2.13 7.89 -25.83 -0.20 -2.34 16 21 C -0.14 -1.60 8.09 -25.83 -0.21 -1.81 16 22 C -0.15 -1.74 7.87 -25.92 -0.20 -1.95 16 23 H 0.30 7.91 6.85 -40.82 -0.28 7.63 16 24 H 0.11 2.65 6.51 -52.49 -0.34 2.31 16 25 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 26 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 27 H 0.11 2.25 7.33 -52.49 -0.38 1.86 16 28 H 0.41 6.39 8.66 -34.47 -0.30 6.09 16 29 H 0.11 1.72 7.78 -51.93 -0.40 1.31 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 303.94 15.07 4.58 4.58 Total: -1.00 -29.72 303.94 -10.03 -39.75 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -4.18 Total: 13.17 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: -3.57 Total: -44.18 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.66 Total: -37.87 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -1.89 Total: -48.94 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.10 Total: 14.99 kcal Atomic # 16 Polarization: 59.03 SS G_CDS: -0.53 Total: 58.50 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.72 -10.03 -39.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601434378.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.668 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds