Wall clock time and date at job start Tue Mar 31 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86801 * 119.99948 * 2 1 4 4 H 1.48494 * 109.47121 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47025 * 120.00025 * 3 2 1 6 6 H 1.48500 * 109.47050 * 239.99561 * 3 2 1 7 7 C 1.39946 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00182 * 151.89297 * 7 2 1 9 9 C 1.41393 * 119.99989 * 331.89917 * 7 2 1 10 10 C 1.40736 * 120.24215 * 335.74629 * 9 7 2 11 11 C 1.37598 * 119.74567 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24786 * 0.02562 * 11 10 9 13 13 C 1.38611 * 120.50284 * 359.97438 * 12 11 10 14 14 C 1.37646 * 120.24612 * 359.67623 * 13 12 11 15 15 S 1.76199 * 120.12950 * 180.31466 * 14 13 12 16 16 O 1.42106 * 106.40200 * 358.01086 * 15 14 13 17 17 O 1.42103 * 106.40102 * 130.92994 * 15 14 13 18 18 N 1.65600 * 107.22189 * 244.46947 * 15 14 13 19 19 C 1.46502 * 119.99773 * 64.83117 * 18 15 14 20 20 C 1.53785 * 113.61083 * 242.40098 * 19 18 15 21 21 C 1.53949 * 87.01957 * 220.04691 * 20 19 18 22 22 C 1.53778 * 113.61573 * 144.79686 * 19 18 15 23 23 H 0.97006 * 120.00097 * 174.62240 * 1 2 3 24 24 H 1.07991 * 120.12755 * 359.97438 * 10 9 7 25 25 H 1.07997 * 119.87998 * 180.02562 * 11 10 9 26 26 H 1.07997 * 119.75200 * 179.97438 * 12 11 10 27 27 H 1.08001 * 119.88189 * 179.97438 * 13 12 11 28 28 H 0.96997 * 119.99942 * 244.82524 * 18 15 14 29 29 H 1.09003 * 112.85292 * 13.59297 * 19 18 15 30 30 H 1.09000 * 113.61400 * 334.56832 * 20 19 18 31 31 H 1.09002 * 113.61194 * 105.46786 * 20 19 18 32 32 H 1.08996 * 113.53898 * 270.81488 * 21 20 19 33 33 H 1.09002 * 113.66723 * 139.93099 * 21 20 19 34 34 H 1.08995 * 113.61082 * 254.52734 * 22 19 18 35 35 H 1.08997 * 113.61513 * 25.34190 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2772 2.7464 -0.0006 5 1 3.0959 1.6964 1.2125 6 1 3.0960 1.6964 -1.2124 7 6 2.0079 -1.2119 0.0005 8 1 2.9925 -1.2673 -0.4401 9 6 1.4260 -2.3640 0.5778 10 6 0.4346 -2.2367 1.5685 11 6 -0.1245 -3.3648 2.1238 12 6 0.2859 -4.6233 1.7111 13 6 1.2615 -4.7606 0.7362 14 6 1.8294 -3.6461 0.1618 15 16 3.0635 -3.8242 -1.0832 16 8 3.2820 -5.2202 -1.2348 17 8 2.6760 -2.9772 -2.1564 18 7 4.4688 -3.1944 -0.4743 19 6 5.1150 -3.8255 0.6791 20 6 5.2000 -2.9123 1.9135 21 6 6.6117 -3.4833 2.1391 22 6 6.6511 -3.7734 0.6294 23 1 -0.4850 -0.8364 -0.0787 24 1 0.1144 -1.2575 1.8923 25 1 -0.8857 -3.2696 2.8839 26 1 -0.1580 -5.5033 2.1526 27 1 1.5739 -5.7458 0.4225 28 1 4.8640 -2.4076 -0.8814 29 1 4.7185 -4.8174 0.8962 30 1 5.1923 -1.8495 1.6718 31 1 4.4915 -3.1737 2.6996 32 1 6.6245 -4.3813 2.7566 33 1 7.3393 -2.7376 2.4595 34 1 7.1125 -4.7289 0.3802 35 1 7.0410 -2.9473 0.0347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601434378.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:46 Heat of formation + Delta-G solvation = -71.452081 kcal Electronic energy + Delta-G solvation = -20685.560468 eV Core-core repulsion = 17581.307456 eV Total energy + Delta-G solvation = -3104.253011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.79313 -39.56096 -38.06665 -36.72148 -35.92878 -33.81396 -31.98897 -31.27519 -27.21396 -26.43102 -25.32161 -23.57767 -23.00960 -20.87996 -20.31665 -20.01751 -18.51658 -17.90433 -17.46503 -16.66680 -16.38216 -15.97569 -15.75403 -15.48974 -15.08049 -14.41709 -14.07874 -13.99278 -13.62655 -13.40794 -13.36756 -13.24825 -13.06191 -12.98721 -12.87491 -12.76312 -12.24367 -11.99873 -11.79837 -11.64300 -11.59046 -11.23294 -11.14483 -10.96806 -10.17142 -9.99120 -9.68259 -9.38269 -6.71214 -0.19513 0.43876 0.87440 1.49197 1.62729 1.77016 2.27380 2.31082 2.54398 2.94265 3.32871 3.67190 3.78451 3.85807 3.98798 4.08992 4.21081 4.32507 4.33590 4.62746 4.80970 4.89505 4.93841 4.98429 5.10217 5.16298 5.19405 5.25139 5.27526 5.48951 5.59260 5.64499 5.66795 5.84444 5.97180 6.15366 6.23855 6.53447 6.75002 7.83254 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013657 B = 0.009156 C = 0.007446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.683574 B = 3057.351845 C = 3759.728779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.009 3.991 3 Si 1.105 2.895 4 H -0.270 1.270 5 H -0.249 1.249 6 H -0.256 1.256 7 C -0.521 4.521 8 H 0.094 0.906 9 C 0.147 3.853 10 C -0.239 4.239 11 C -0.053 4.053 12 C -0.266 4.266 13 C -0.001 4.001 14 C -0.798 4.798 15 S 2.716 3.284 16 O -1.011 7.011 17 O -1.005 7.005 18 N -1.097 6.097 19 C 0.115 3.885 20 C -0.157 4.157 21 C -0.126 4.126 22 C -0.135 4.135 23 H 0.287 0.713 24 H 0.100 0.900 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.122 0.878 28 H 0.421 0.579 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.703 -1.741 4.858 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.211 4.211 3 Si 0.920 3.080 4 H -0.194 1.194 5 H -0.173 1.173 6 H -0.180 1.180 7 C -0.547 4.547 8 H 0.112 0.888 9 C 0.142 3.858 10 C -0.259 4.259 11 C -0.072 4.072 12 C -0.285 4.285 13 C -0.021 4.021 14 C -0.892 4.892 15 S 2.813 3.187 16 O -1.002 7.002 17 O -0.995 6.995 18 N -0.855 5.855 19 C 0.008 3.992 20 C -0.197 4.197 21 C -0.164 4.164 22 C -0.174 4.174 23 H 0.100 0.900 24 H 0.118 0.882 25 H 0.143 0.857 26 H 0.146 0.854 27 H 0.140 0.860 28 H 0.256 0.744 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.257 -0.672 4.103 11.068 hybrid contribution -0.713 -1.303 0.342 1.524 sum 9.544 -1.975 4.445 10.712 Atomic orbital electron populations 1.70565 1.09168 1.33648 1.27479 1.28547 0.95514 1.07731 0.89286 0.83210 0.75331 0.69593 0.79883 1.19447 1.17270 1.17968 1.21120 1.05375 0.95474 1.32751 0.88847 1.17214 0.89235 0.90705 0.88596 1.21369 1.04501 0.97759 1.02270 1.21175 0.96450 0.92803 0.96749 1.20838 1.05171 0.97085 1.05455 1.20638 0.92855 0.96198 0.92389 1.30061 1.29822 0.99505 1.29795 1.00416 0.73144 0.71775 0.73362 1.93422 1.86278 1.33733 1.86729 1.93483 1.82992 1.68593 1.54463 1.55275 1.41195 1.43955 1.45094 1.22555 0.95142 0.96545 0.84975 1.23485 0.98340 1.00385 0.97459 1.22720 0.95932 1.01886 0.95873 1.23316 0.92995 1.03512 0.97582 0.90019 0.88216 0.85727 0.85380 0.86003 0.74358 0.87968 0.89684 0.92476 0.88990 0.89334 0.89870 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.69 12.32 21.83 0.27 -40.42 16 2 C 0.01 0.46 4.88 85.26 0.42 0.87 16 3 Si 1.10 40.01 30.01 68.60 2.06 42.07 16 4 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.25 -8.10 7.11 99.48 0.71 -7.40 16 6 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 7 C -0.52 -25.99 7.69 23.46 0.18 -25.81 16 8 H 0.09 4.37 5.62 -2.91 -0.02 4.35 16 9 C 0.15 7.43 5.30 -21.29 -0.11 7.32 16 10 C -0.24 -11.66 8.02 22.73 0.18 -11.48 16 11 C -0.05 -2.28 10.02 22.22 0.22 -2.06 16 12 C -0.27 -11.01 10.05 22.46 0.23 -10.78 16 13 C 0.00 -0.05 9.54 22.22 0.21 0.16 16 14 C -0.80 -37.95 5.93 22.73 0.13 -37.81 16 15 S 2.72 119.32 4.91 -56.49 -0.28 119.04 16 16 O -1.01 -45.93 16.50 -128.00 -2.11 -48.04 16 17 O -1.00 -51.06 16.57 -128.00 -2.12 -53.18 16 18 N -1.10 -37.55 4.90 -167.19 -0.82 -38.37 16 19 C 0.12 3.34 4.42 45.52 0.20 3.54 16 20 C -0.16 -4.22 7.89 31.18 0.25 -3.98 16 21 C -0.13 -2.43 8.09 31.18 0.25 -2.18 16 22 C -0.13 -2.83 7.87 31.12 0.24 -2.58 16 23 H 0.29 15.60 6.85 -92.70 -0.63 14.96 16 24 H 0.10 4.97 6.51 -2.92 -0.02 4.95 16 25 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 26 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 27 H 0.12 4.96 7.33 -2.91 -0.02 4.94 16 28 H 0.42 12.73 8.66 -96.75 -0.84 11.89 16 29 H 0.10 3.11 7.78 -2.39 -0.02 3.09 16 30 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -64.50 303.94 -0.19 -64.68 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: 0.41 Total: 39.00 kcal Atomic # 6 Polarization: -87.19 SS G_CDS: 2.40 Total: -84.78 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -0.55 Total: -78.79 kcal Atomic # 8 Polarization: -96.98 SS G_CDS: -4.23 Total: -101.21 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.06 Total: 42.07 kcal Atomic # 16 Polarization: 119.32 SS G_CDS: -0.28 Total: 119.04 kcal Total: -64.50 -0.19 -64.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601434378.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.769 kcal (2) G-P(sol) polarization free energy of solvation -64.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds