Wall clock time and date at job start Tue Mar 31 2020 05:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46990 * 2 1 4 4 C 1.50707 * 109.47188 * 240.00272 * 2 1 3 5 5 H 1.07996 * 119.99914 * 240.00238 * 4 2 1 6 6 C 1.37878 * 119.99998 * 59.99613 * 4 2 1 7 7 N 1.31523 * 119.99798 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99983 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46936 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46770 * 120.00007 * 8 6 4 11 11 H 1.48499 * 109.46977 * 240.00168 * 8 6 4 12 12 N 1.46895 * 109.47382 * 120.00214 * 2 1 3 13 13 C 1.46907 * 110.99729 * 274.99991 * 12 2 1 14 14 C 1.50699 * 109.47061 * 179.97438 * 13 12 2 15 15 N 1.29423 * 125.69536 * 89.95808 * 14 13 12 16 16 N 1.26394 * 116.47809 * 180.02562 * 15 14 13 17 17 C 1.29424 * 116.47211 * 0.02562 * 16 15 14 18 18 C 1.50703 * 125.69404 * 179.97438 * 17 16 15 19 19 F 1.39899 * 109.47132 * 5.02566 * 18 17 16 20 20 F 1.39903 * 109.46838 * 125.02233 * 18 17 16 21 21 F 1.39897 * 109.47092 * 245.02581 * 18 17 16 22 22 S 1.71209 * 108.60774 * 359.97438 * 17 16 15 23 23 H 1.08998 * 109.46999 * 300.00024 * 1 2 3 24 24 H 1.09000 * 109.47203 * 60.00223 * 1 2 3 25 25 H 1.09001 * 109.46990 * 179.97438 * 1 2 3 26 26 H 0.96996 * 119.99234 * 179.97438 * 7 6 4 27 27 H 1.00895 * 111.00405 * 151.04959 * 12 2 1 28 28 H 1.08994 * 109.46985 * 60.00351 * 13 12 2 29 29 H 1.08998 * 109.46929 * 299.99909 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 3.1455 -2.2875 -3.6039 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2226 2.3468 14 6 2.5874 -0.5218 3.5560 15 7 3.8278 -0.6419 3.9052 16 7 4.0557 -1.3073 4.9554 17 6 3.0233 -1.7951 5.5646 18 6 3.0546 -2.6171 6.8274 19 9 4.3660 -2.6800 7.3105 20 9 2.2309 -2.0241 7.7903 21 9 2.5960 -3.9101 6.5536 22 16 1.6161 -1.3507 4.6965 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7094 1.1618 -3.4844 27 1 2.9173 -1.1204 1.0287 28 1 1.0871 0.6162 2.5525 29 1 2.7589 1.0462 2.1181 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602870686.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:41 Heat of formation + Delta-G solvation = -81.241951 kcal Electronic energy + Delta-G solvation = -19155.739058 eV Core-core repulsion = 15405.664442 eV Total energy + Delta-G solvation = -3750.074616 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.55031 -48.09952 -48.00940 -41.63570 -36.44691 -33.51098 -32.08444 -29.85872 -27.79522 -25.85008 -25.20017 -23.90052 -20.94625 -20.08489 -20.00288 -18.97646 -18.38073 -18.06156 -16.73625 -15.98814 -15.21708 -14.88990 -14.81889 -14.61931 -14.45911 -14.20060 -14.16524 -14.15466 -13.77620 -13.62001 -12.97204 -12.59997 -12.23912 -11.45337 -11.09234 -10.93150 -10.82479 -10.69319 -10.49411 -10.39471 -10.28248 -10.14865 -9.90559 -9.00152 -8.61761 -7.68515 -6.15719 -4.22731 -0.12600 0.38816 0.97036 2.01731 2.13923 3.06666 3.22552 3.30951 3.35213 3.70157 3.87681 4.02025 4.31873 4.60144 4.93034 5.11413 5.19983 5.63006 5.74735 6.63880 6.91495 6.98102 7.22337 7.61996 7.67704 8.02273 8.10895 8.13025 8.37453 8.84404 9.43998 10.90684 Molecular weight = 281.05amu Principal moments of inertia in cm(-1) A = 0.037830 B = 0.003556 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.975727 B = 7871.888505 C = 8084.262120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.213 3.787 3 H 0.008 0.992 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.681 5.681 13 C 0.127 3.873 14 C 0.030 3.970 15 N -0.257 5.257 16 N -0.191 5.191 17 C -0.173 4.173 18 C 0.566 3.434 19 F -0.153 7.153 20 F -0.163 7.163 21 F -0.161 7.161 22 S 0.292 5.708 23 H 0.005 0.995 24 H 0.085 0.915 25 H 0.034 0.966 26 H 0.262 0.738 27 H 0.341 0.659 28 H 0.098 0.902 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.378 -3.726 17.345 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.106 3.894 3 H 0.026 0.974 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.315 5.315 13 C -0.006 4.006 14 C -0.245 4.245 15 N -0.098 5.098 16 N -0.033 5.033 17 C -0.452 4.452 18 C 0.508 3.492 19 F -0.134 7.134 20 F -0.145 7.145 21 F -0.142 7.142 22 S 0.535 5.465 23 H 0.024 0.976 24 H 0.103 0.897 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.159 0.841 28 H 0.116 0.884 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.770 -3.813 17.360 17.790 hybrid contribution 1.233 -0.029 -0.928 1.544 sum 0.463 -3.842 16.431 16.881 Atomic orbital electron populations 1.21767 0.97435 0.99706 0.99702 1.19201 0.92813 0.92661 0.84707 0.97388 1.21224 1.31845 1.12791 0.90145 0.91982 1.24905 0.94880 0.94954 0.99133 1.69890 1.36394 1.22731 1.23658 0.86419 0.78650 0.79635 0.82603 1.19694 1.20882 1.20978 1.60982 1.32960 1.31914 1.05612 1.20671 1.00903 0.93357 0.85696 1.30021 0.92197 0.99725 1.02595 1.71665 1.16411 1.14428 1.07285 1.71480 1.26485 1.04180 1.01166 1.28998 0.97726 1.12470 1.05968 1.16552 0.74835 0.77134 0.80715 1.93272 1.35415 1.96132 1.88581 1.93268 1.72483 1.83703 1.65003 1.93282 1.88814 1.38474 1.93655 1.83809 1.07247 1.41536 1.13871 0.97587 0.89674 0.94643 0.92781 0.84114 0.88432 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.19 37.16 0.34 -2.54 15 2 C 0.21 4.95 2.60 -68.86 -0.18 4.77 15 3 H 0.01 0.21 7.80 -51.93 -0.40 -0.19 15 4 C -0.52 -13.57 8.59 -34.44 -0.30 -13.86 15 5 H 0.06 1.61 7.62 -52.49 -0.40 1.21 15 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 15 7 N -0.89 -24.18 11.32 55.43 0.63 -23.55 15 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 15 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 12 N -0.68 -13.17 6.29 -109.22 -0.69 -13.86 15 13 C 0.13 1.99 6.08 -4.97 -0.03 1.96 15 14 C 0.03 0.44 7.04 -13.29 -0.09 0.35 15 15 N -0.26 -4.20 11.66 32.58 0.38 -3.82 15 16 N -0.19 -2.99 11.41 32.58 0.37 -2.62 15 17 C -0.17 -2.27 6.83 -13.29 -0.09 -2.36 15 18 C 0.57 6.44 3.55 36.01 0.13 6.57 15 19 F -0.15 -1.85 17.13 2.25 0.04 -1.81 15 20 F -0.16 -1.67 17.30 2.25 0.04 -1.64 15 21 F -0.16 -1.78 17.30 2.25 0.04 -1.74 15 22 S 0.29 3.41 23.04 -107.50 -2.48 0.94 15 23 H 0.01 0.10 7.45 -51.93 -0.39 -0.28 15 24 H 0.08 2.13 6.07 -51.93 -0.32 1.82 15 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 26 H 0.26 6.80 8.31 -40.82 -0.34 6.46 15 27 H 0.34 6.77 8.22 -39.29 -0.32 6.45 15 28 H 0.10 1.38 7.44 -51.93 -0.39 0.99 15 29 H 0.07 1.10 8.05 -51.93 -0.42 0.68 15 LS Contribution 284.59 15.07 4.29 4.29 Total: -1.00 -27.28 284.59 -4.91 -32.19 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -2.19 Total: -0.45 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -0.31 Total: -3.52 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.69 Total: -43.85 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.12 Total: -5.19 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -2.48 Total: 0.94 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.28 -4.91 -32.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602870686.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.055 kcal (2) G-P(sol) polarization free energy of solvation -27.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds