Wall clock time and date at job start Tue Mar 31 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 120.00189 * 2 1 4 4 H 1.48494 * 109.47128 * 89.99969 * 3 2 1 5 5 H 1.48501 * 109.46955 * 209.99615 * 3 2 1 6 6 H 1.48499 * 109.47031 * 329.99334 * 3 2 1 7 7 C 1.39949 * 119.99588 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99740 * 159.51507 * 7 2 1 9 9 C 1.41399 * 119.99772 * 339.51187 * 7 2 1 10 10 C 1.40730 * 120.24799 * 331.66673 * 9 7 2 11 11 C 1.37597 * 119.74565 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.24746 * 0.02562 * 11 10 9 13 13 C 1.38610 * 120.50070 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.25100 * 359.66428 * 13 12 11 15 15 S 1.76193 * 120.13049 * 180.32392 * 14 13 12 16 16 O 1.42095 * 106.40574 * 225.03718 * 15 14 13 17 17 O 1.42104 * 106.40145 * 357.95712 * 15 14 13 18 18 N 1.65603 * 107.21969 * 111.49677 * 15 14 13 19 19 C 1.46497 * 120.00074 * 66.73691 * 18 15 14 20 20 C 1.52992 * 109.47126 * 163.28162 * 19 18 15 21 21 C 1.53009 * 117.49669 * 243.74757 * 20 19 18 22 22 C 1.53001 * 117.50055 * 175.09011 * 20 19 18 23 23 H 0.96999 * 120.00282 * 175.43917 * 1 2 3 24 24 H 1.07998 * 120.12822 * 359.97438 * 10 9 7 25 25 H 1.08001 * 119.87591 * 180.02562 * 11 10 9 26 26 H 1.08000 * 119.74312 * 179.97438 * 12 11 10 27 27 H 1.07999 * 119.87209 * 179.97438 * 13 12 11 28 28 H 0.97004 * 119.99691 * 246.74406 * 18 15 14 29 29 H 1.09003 * 109.47025 * 283.28007 * 19 18 15 30 30 H 1.09001 * 109.46891 * 43.27641 * 19 18 15 31 31 H 1.08998 * 115.55636 * 29.41684 * 20 19 18 32 32 H 1.08996 * 117.49887 * 359.97438 * 21 20 19 33 33 H 1.08997 * 117.49670 * 145.02361 * 21 20 19 34 34 H 1.09000 * 117.50358 * 214.97784 * 22 20 19 35 35 H 1.09006 * 117.49771 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 1.4000 5 1 3.5399 1.4400 -0.7000 6 1 1.4399 2.6526 -0.7002 7 6 2.0079 -1.2120 0.0005 8 1 3.0367 -1.2418 -0.3268 9 6 1.3679 -2.3976 0.4297 10 6 0.3246 -2.3386 1.3723 11 6 -0.2907 -3.4988 1.7831 12 6 0.1140 -4.7227 1.2723 13 6 1.1412 -4.7928 0.3442 14 6 1.7667 -3.6446 -0.0858 15 16 3.0663 -3.7365 -1.2719 16 8 4.1005 -2.8834 -0.8011 17 8 3.2622 -5.1170 -1.5463 18 7 2.5009 -3.0570 -2.6723 19 6 2.2018 -1.6238 -2.7223 20 6 2.1056 -1.1735 -4.1813 21 6 3.1361 -0.1565 -4.6762 22 6 1.6847 0.2731 -4.4480 23 1 -0.4850 -0.8374 -0.0668 24 1 0.0086 -1.3865 1.7723 25 1 -1.0919 -3.4560 2.5060 26 1 -0.3743 -5.6283 1.6007 27 1 1.4485 -5.7515 -0.0466 28 1 2.3677 -3.6081 -3.4594 29 1 1.2536 -1.4328 -2.2199 30 1 2.9960 -1.0693 -2.2225 31 1 1.7697 -1.9335 -4.8868 32 1 3.8823 0.1920 -3.9622 33 1 3.4778 -0.2473 -5.7073 34 1 1.0722 0.4649 -5.3290 35 1 1.4760 0.9039 -3.5839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619571793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:49 Heat of formation + Delta-G solvation = -60.482443 kcal Electronic energy + Delta-G solvation = -20768.616653 eV Core-core repulsion = 17664.839321 eV Total energy + Delta-G solvation = -3103.777332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.72565 -38.71580 -38.07828 -36.74463 -35.97178 -34.94885 -32.00920 -31.22633 -27.59376 -26.84465 -23.66878 -23.17311 -22.97796 -21.77272 -20.35914 -19.93858 -18.53127 -17.93650 -17.31697 -16.67338 -16.51618 -15.92077 -15.68045 -15.35488 -15.02228 -14.89211 -14.66962 -14.27979 -13.85735 -13.38806 -13.19296 -13.05987 -13.00657 -12.82336 -12.75263 -12.35004 -12.26468 -12.08131 -11.94588 -11.60157 -11.28775 -11.15938 -11.03313 -10.96211 -10.12609 -10.01843 -9.62701 -9.26957 -6.70159 -0.21425 0.41635 0.85693 1.49380 1.59184 1.77646 2.23783 2.31701 2.57621 2.89553 2.97243 3.36071 3.64962 3.89522 4.08000 4.13750 4.22205 4.31951 4.37832 4.61333 4.62994 4.81285 4.84588 4.99527 5.06357 5.08681 5.11523 5.32754 5.34292 5.42957 5.50196 5.58991 5.77001 5.85529 5.99491 6.16279 6.29247 6.57702 6.76265 7.93698 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013833 B = 0.010401 C = 0.007135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.660400 B = 2691.484040 C = 3923.642934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.023 3.977 3 Si 1.085 2.915 4 H -0.266 1.266 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.540 4.540 8 H 0.110 0.890 9 C 0.144 3.856 10 C -0.237 4.237 11 C -0.055 4.055 12 C -0.261 4.261 13 C -0.003 4.003 14 C -0.800 4.800 15 S 2.726 3.274 16 O -1.000 7.000 17 O -1.009 7.009 18 N -1.105 6.105 19 C 0.158 3.842 20 C -0.174 4.174 21 C -0.174 4.174 22 C -0.173 4.173 23 H 0.293 0.707 24 H 0.103 0.897 25 H 0.126 0.874 26 H 0.130 0.870 27 H 0.124 0.876 28 H 0.421 0.579 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.124 0.876 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.411 1.546 -7.282 7.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.198 4.198 3 Si 0.902 3.098 4 H -0.190 1.190 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.567 4.567 8 H 0.128 0.872 9 C 0.139 3.861 10 C -0.256 4.256 11 C -0.073 4.073 12 C -0.281 4.281 13 C -0.022 4.022 14 C -0.894 4.894 15 S 2.822 3.178 16 O -0.990 6.990 17 O -1.000 7.000 18 N -0.865 5.865 19 C 0.032 3.968 20 C -0.194 4.194 21 C -0.211 4.211 22 C -0.210 4.210 23 H 0.106 0.894 24 H 0.121 0.879 25 H 0.144 0.856 26 H 0.148 0.852 27 H 0.142 0.858 28 H 0.256 0.744 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.033 2.946 -6.987 7.653 hybrid contribution -0.832 -1.960 0.407 2.168 sum 0.200 0.985 -6.581 6.657 Atomic orbital electron populations 1.70538 1.08562 1.34050 1.28025 1.28052 0.95524 1.06345 0.89899 0.83424 0.75782 0.70994 0.79577 1.19045 1.18054 1.18069 1.21659 1.02482 0.93778 1.38784 0.87248 1.17346 0.89703 0.91144 0.87866 1.21446 1.03423 0.97828 1.02928 1.21214 0.96869 0.92694 0.96540 1.20895 1.03495 0.97637 1.06083 1.20657 0.92328 0.95943 0.93296 1.30131 1.30829 1.00251 1.28189 1.00149 0.73721 0.70982 0.72968 1.93427 1.56255 1.68187 1.81171 1.93425 1.86736 1.34287 1.85567 1.55149 1.85695 1.17331 1.28341 1.21128 1.01050 0.78907 0.95728 1.22568 1.06544 0.94185 0.96061 1.23189 0.92315 1.02473 1.03130 1.23041 0.98334 0.95906 1.03759 0.89361 0.87913 0.85576 0.85225 0.85779 0.74362 0.92148 0.91419 0.85783 0.89363 0.86503 0.86551 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.35 12.41 21.83 0.27 -37.08 16 2 C 0.02 1.03 4.55 85.26 0.39 1.42 16 3 Si 1.09 39.70 29.98 68.60 2.06 41.76 16 4 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 5 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 6 H -0.26 -8.75 7.11 99.48 0.71 -8.05 16 7 C -0.54 -26.34 4.81 23.46 0.11 -26.23 16 8 H 0.11 5.51 4.09 -2.91 -0.01 5.50 16 9 C 0.14 7.19 5.27 -21.29 -0.11 7.08 16 10 C -0.24 -11.35 7.82 22.73 0.18 -11.17 16 11 C -0.05 -2.31 10.02 22.22 0.22 -2.08 16 12 C -0.26 -10.72 10.05 22.46 0.23 -10.50 16 13 C 0.00 -0.11 9.53 22.22 0.21 0.10 16 14 C -0.80 -37.81 5.97 22.73 0.14 -37.67 16 15 S 2.73 118.38 5.44 -56.49 -0.31 118.08 16 16 O -1.00 -48.94 14.87 -128.00 -1.90 -50.84 16 17 O -1.01 -45.09 16.97 -128.00 -2.17 -47.27 16 18 N -1.10 -39.44 5.99 -187.50 -1.12 -40.56 16 19 C 0.16 5.71 4.72 86.38 0.41 6.12 16 20 C -0.17 -4.80 5.90 -10.79 -0.06 -4.87 16 21 C -0.17 -4.18 10.18 30.62 0.31 -3.87 16 22 C -0.17 -4.31 10.25 30.62 0.31 -4.00 16 23 H 0.29 14.37 6.31 -92.71 -0.59 13.78 16 24 H 0.10 5.02 6.50 -2.91 -0.02 5.00 16 25 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 26 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 27 H 0.12 4.99 7.33 -2.91 -0.02 4.97 16 28 H 0.42 12.14 8.56 -96.74 -0.83 11.31 16 29 H 0.06 2.48 6.40 -2.39 -0.02 2.47 16 30 H 0.07 2.68 5.83 -2.39 -0.01 2.67 16 31 H 0.12 2.89 7.98 -2.39 -0.02 2.87 16 32 H 0.09 2.29 8.03 -2.39 -0.02 2.27 16 33 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -59.79 297.64 -0.36 -60.15 By element: Atomic # 1 Polarization: 40.95 SS G_CDS: 0.48 Total: 41.43 kcal Atomic # 6 Polarization: -88.00 SS G_CDS: 2.33 Total: -85.67 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -0.85 Total: -77.64 kcal Atomic # 8 Polarization: -94.03 SS G_CDS: -4.07 Total: -98.11 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.06 Total: 41.76 kcal Atomic # 16 Polarization: 118.38 SS G_CDS: -0.31 Total: 118.08 kcal Total: -59.79 -0.36 -60.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619571793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.333 kcal (2) G-P(sol) polarization free energy of solvation -59.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds