Wall clock time and date at job start Tue Mar 31 2020 05:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86792 * 120.00449 * 2 1 4 4 H 1.48498 * 109.47551 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47201 * 300.00435 * 3 2 1 6 6 H 1.48499 * 109.47050 * 60.00143 * 3 2 1 7 7 C 1.39878 * 119.99571 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99718 * 192.50840 * 7 2 1 9 9 C 1.41135 * 119.99911 * 12.50680 * 7 2 1 10 10 C 1.40885 * 120.15417 * 208.75306 * 9 7 2 11 11 C 1.36337 * 119.83625 * 180.24964 * 10 9 7 12 12 C 1.39568 * 120.16129 * 359.51303 * 11 10 9 13 13 N 1.38856 * 119.84353 * 180.24922 * 12 11 10 14 14 S 1.65599 * 120.00099 * 133.36504 * 13 12 11 15 15 O 1.42104 * 104.27531 * 53.93943 * 14 13 12 16 16 O 1.42098 * 104.27733 * 181.79718 * 14 13 12 17 17 C 1.81407 * 104.45112 * 297.86910 * 14 13 12 18 18 C 1.53781 * 113.61332 * 283.23846 * 17 14 13 19 19 C 1.53954 * 87.01623 * 220.04700 * 18 17 14 20 20 C 1.53774 * 113.61395 * 185.63151 * 17 14 13 21 21 C 1.39565 * 120.31602 * 0.26769 * 12 11 10 22 22 C 1.36341 * 120.16080 * 359.97438 * 21 12 11 23 23 H 0.96996 * 119.99383 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.08109 * 0.02562 * 10 9 7 25 25 H 1.08001 * 119.92068 * 179.77917 * 11 10 9 26 26 H 0.96997 * 120.00368 * 313.36601 * 13 12 11 27 27 H 1.08994 * 112.84523 * 54.43296 * 17 14 13 28 28 H 1.09005 * 113.61371 * 334.56350 * 18 17 14 29 29 H 1.09001 * 113.61214 * 105.46487 * 18 17 14 30 30 H 1.08994 * 113.53507 * 270.80840 * 19 18 17 31 31 H 1.09003 * 113.66563 * 139.93456 * 19 18 17 32 32 H 1.09008 * 113.61448 * 254.52697 * 20 17 14 33 33 H 1.08999 * 113.61815 * 25.34733 * 20 17 14 34 34 H 1.08001 * 119.92138 * 180.02562 * 21 12 11 35 35 H 1.08000 * 120.08684 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6176 0.0000 4 1 3.7032 1.3462 -0.0006 5 1 1.8844 2.3964 -1.2125 6 1 1.8845 2.3963 1.2125 7 6 2.0084 -1.2114 -0.0005 8 1 3.0691 -1.2226 0.2020 9 6 1.3277 -2.4190 -0.2658 10 6 1.7904 -3.6287 0.2887 11 6 1.1309 -4.7922 0.0241 12 6 -0.0059 -4.7854 -0.7856 13 7 -0.6755 -5.9735 -1.0466 14 16 -2.3249 -6.0408 -0.9141 15 8 -2.7864 -4.9828 -1.7430 16 8 -2.6450 -7.3939 -1.2068 17 6 -2.6542 -5.6719 0.8313 18 6 -2.3709 -6.8530 1.7746 19 6 -3.6461 -6.4467 2.5356 20 6 -4.1347 -5.8137 1.2221 21 6 -0.4727 -3.5901 -1.3345 22 6 0.1797 -2.4197 -1.0824 23 1 -0.4849 0.8401 -0.0004 24 1 2.6675 -3.6349 0.9189 25 1 1.4864 -5.7209 0.4455 26 1 -0.1773 -6.7641 -1.3065 27 1 -2.2042 -4.7345 1.1580 28 1 -2.4434 -7.8264 1.2894 29 1 -1.4574 -6.7365 2.3577 30 1 -3.4668 -5.7218 3.3295 31 1 -4.2489 -7.2939 2.8628 32 1 -4.6432 -4.8595 1.3600 33 1 -4.6907 -6.5013 0.5848 34 1 -1.3532 -3.5921 -1.9598 35 1 -0.1828 -1.4954 -1.5075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717746813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:34 Heat of formation + Delta-G solvation = -35.128998 kcal Electronic energy + Delta-G solvation = -19957.009446 eV Core-core repulsion = 16854.331522 eV Total energy + Delta-G solvation = -3102.677924 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.48107 -38.08588 -36.63833 -35.58223 -34.77884 -32.81450 -29.59979 -28.74646 -26.19232 -25.83821 -24.74043 -21.28780 -20.92997 -20.05225 -18.71157 -17.41404 -17.32927 -16.99079 -16.38696 -15.56379 -15.22623 -14.77981 -14.08234 -13.55708 -13.51760 -12.84382 -12.71497 -12.52142 -12.43358 -12.28649 -12.09640 -11.78032 -11.67447 -11.64766 -11.38889 -11.16964 -10.76364 -10.72303 -10.61679 -10.54445 -10.33899 -9.90049 -9.70419 -9.34523 -8.93182 -7.67884 -7.18165 -6.83431 -4.43160 0.65913 2.61848 2.97530 3.03397 3.07561 3.08411 3.13348 3.86742 4.03977 4.15759 4.37007 4.52058 4.61423 4.80088 4.93456 5.44637 5.52989 5.55460 5.65736 5.75837 5.83603 5.94911 6.10976 6.17517 6.28231 6.36016 6.91181 6.95909 7.09415 7.12729 7.41990 7.53154 7.81769 7.95473 8.06676 8.16713 8.53267 8.77547 8.85597 10.10597 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025823 B = 0.004860 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.057833 B = 5759.997384 C = 5951.337121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.454 4.454 8 H 0.080 0.920 9 C 0.109 3.891 10 C -0.215 4.215 11 C -0.090 4.090 12 C -0.011 4.011 13 N -1.033 6.033 14 S 2.602 3.398 15 O -0.954 6.954 16 O -0.978 6.978 17 C -0.616 4.616 18 C -0.110 4.110 19 C -0.127 4.127 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.147 4.147 23 H 0.282 0.718 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.408 0.592 27 H 0.156 0.844 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 -7.857 3.866 9.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.484 4.484 8 H 0.098 0.902 9 C 0.106 3.894 10 C -0.236 4.236 11 C -0.112 4.112 12 C -0.107 4.107 13 N -0.784 5.784 14 S 2.698 3.302 15 O -0.944 6.944 16 O -0.968 6.968 17 C -0.726 4.726 18 C -0.148 4.148 19 C -0.165 4.165 20 C -0.154 4.154 21 C -0.142 4.142 22 C -0.167 4.167 23 H 0.093 0.907 24 H 0.115 0.885 25 H 0.111 0.889 26 H 0.243 0.757 27 H 0.174 0.826 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.143 0.857 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.221 -7.785 3.198 9.904 hybrid contribution 0.897 0.739 0.587 1.302 sum -4.324 -7.046 3.785 9.093 Atomic orbital electron populations 1.69832 1.07488 1.29344 1.35103 1.25953 0.94862 1.01452 0.92310 0.86199 0.80812 0.80736 0.78627 1.18404 1.19647 1.19947 1.19626 0.96531 0.90697 1.41561 0.90210 1.17761 0.91317 0.92185 0.88167 1.20679 1.03556 0.92989 1.06359 1.20315 0.96198 0.97063 0.97620 1.16836 1.00745 0.84099 1.09037 1.52371 1.25608 1.17602 1.82826 1.05519 0.73430 0.73724 0.77481 1.93548 1.80198 1.57314 1.63335 1.93519 1.83337 1.35964 1.84008 1.31881 1.06045 1.09754 1.24870 1.22591 0.99916 0.95369 0.96972 1.22768 0.96709 1.00679 0.96345 1.22565 0.91657 1.02525 0.98612 1.21257 1.00990 0.92332 0.99668 1.21049 0.98329 0.96653 1.00675 0.90710 0.88542 0.88924 0.75674 0.82576 0.88656 0.89741 0.89443 0.90865 0.89548 0.89483 0.85683 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.79 10.91 55.54 0.61 -19.18 16 2 C 0.07 1.74 5.22 -17.33 -0.09 1.65 16 3 Si 0.91 18.00 29.58 -169.99 -5.03 12.97 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 7 C -0.45 -11.47 9.04 -37.87 -0.34 -11.81 16 8 H 0.08 1.93 7.88 -52.49 -0.41 1.51 16 9 C 0.11 2.76 5.55 -106.79 -0.59 2.17 16 10 C -0.22 -4.90 9.74 -39.27 -0.38 -5.29 16 11 C -0.09 -1.85 9.90 -39.77 -0.39 -2.24 16 12 C -0.01 -0.24 6.04 -83.69 -0.51 -0.74 16 13 N -1.03 -17.96 5.63 32.51 0.18 -17.78 16 14 S 2.60 44.33 5.29 -107.50 -0.57 43.76 16 15 O -0.95 -19.63 15.09 -57.54 -0.87 -20.50 16 16 O -0.98 -17.52 17.41 -57.54 -1.00 -18.52 16 17 C -0.62 -8.84 4.28 -25.92 -0.11 -8.95 16 18 C -0.11 -1.33 7.66 -25.83 -0.20 -1.52 16 19 C -0.13 -1.34 8.09 -25.83 -0.21 -1.55 16 20 C -0.11 -1.39 7.67 -25.93 -0.20 -1.59 16 21 C -0.12 -2.84 9.14 -39.77 -0.36 -3.20 16 22 C -0.15 -3.72 8.60 -39.26 -0.34 -4.06 16 23 H 0.28 6.40 8.30 -40.82 -0.34 6.07 16 24 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 25 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 26 H 0.41 6.09 8.91 -34.46 -0.31 5.78 16 27 H 0.16 2.42 8.14 -51.93 -0.42 1.99 16 28 H 0.10 1.09 7.55 -51.93 -0.39 0.70 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.13 2.94 5.60 -52.49 -0.29 2.65 16 35 H 0.12 3.24 6.25 -52.49 -0.33 2.91 16 LS Contribution 305.57 15.07 4.60 4.60 Total: -1.00 -29.50 305.57 -10.05 -39.55 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -4.25 Total: 12.24 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: -3.72 Total: -37.15 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.79 Total: -36.96 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -1.87 Total: -39.02 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: 44.33 SS G_CDS: -0.57 Total: 43.76 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.50 -10.05 -39.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717746813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.419 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds