Wall clock time and date at job start Tue Mar 31 2020 05:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00264 * 2 1 4 4 H 1.48503 * 109.47378 * 239.99627 * 3 2 1 5 5 H 1.48501 * 109.47160 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47331 * 119.99760 * 3 2 1 7 7 C 1.37885 * 119.99633 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99551 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46811 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.46985 * 179.97438 * 10 9 7 12 12 C 1.34706 * 117.00217 * 179.97438 * 11 10 9 13 13 O 1.21477 * 119.99835 * 0.02562 * 12 11 10 14 14 C 1.47742 * 120.00581 * 180.02562 * 12 11 10 15 15 C 1.39585 * 120.11682 * 0.02562 * 14 12 11 16 16 C 1.38439 * 119.78334 * 179.97438 * 15 14 12 17 17 O 1.35909 * 119.98167 * 179.97438 * 16 15 14 18 18 C 1.38862 * 120.04195 * 359.97438 * 16 15 14 19 19 C 1.38258 * 120.24449 * 0.03791 * 18 16 15 20 20 N 1.48018 * 119.89270 * 179.97438 * 19 18 16 21 21 O 1.21799 * 119.99794 * 179.97438 * 20 19 18 22 22 O 1.21797 * 119.99787 * 359.97438 * 20 19 18 23 23 C 1.37995 * 120.21432 * 359.96496 * 19 18 16 24 24 H 0.97006 * 119.99709 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47143 * 60.00282 * 9 7 2 26 26 H 1.09000 * 109.47443 * 299.99997 * 9 7 2 27 27 H 1.09001 * 109.47112 * 60.00362 * 10 9 7 28 28 H 1.09000 * 109.47342 * 299.99771 * 10 9 7 29 29 H 1.07991 * 120.10681 * 359.70001 * 15 14 12 30 30 H 0.96696 * 114.00594 * 90.00165 * 17 16 15 31 31 H 1.07993 * 119.87993 * 180.02562 * 18 16 15 32 32 H 1.07999 * 120.01905 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5191 -4.9196 0.0001 12 6 2.2527 -6.0494 -0.0004 13 8 3.4658 -5.9858 -0.0008 14 6 1.5820 -7.3658 -0.0004 15 6 0.1882 -7.4417 -0.0004 16 6 -0.4331 -8.6788 -0.0010 17 8 -1.7899 -8.7575 -0.0005 18 6 0.3292 -9.8396 -0.0020 19 6 1.7098 -9.7660 -0.0017 20 7 2.5147 -11.0083 -0.0022 21 8 3.7310 -10.9457 -0.0024 22 8 1.9606 -12.0929 -0.0024 23 6 2.3398 -8.5383 -0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8718 -3.6044 0.8895 28 1 2.8718 -3.6045 -0.8905 29 1 -0.4035 -6.5383 0.0044 30 1 -2.1830 -8.7797 -0.8837 31 1 -0.1582 -10.8033 -0.0028 32 1 3.4185 -8.4846 -0.0012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769046826.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:31 Heat of formation + Delta-G solvation = -110.725819 kcal Electronic energy + Delta-G solvation = -20577.014182 eV Core-core repulsion = 16892.472168 eV Total energy + Delta-G solvation = -3684.542014 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.53252 -40.83271 -39.72277 -37.43562 -36.86221 -36.32788 -33.52545 -32.70720 -30.87341 -30.36151 -27.02185 -25.86378 -24.38967 -22.95792 -21.66638 -20.97631 -19.80479 -19.00326 -18.06217 -17.83260 -17.58858 -17.12192 -16.42115 -16.33500 -16.24463 -15.80143 -15.37448 -14.60923 -13.77597 -13.34041 -13.25700 -13.03040 -12.63007 -12.45170 -11.95782 -11.80425 -11.45776 -11.43261 -11.43028 -11.21614 -10.87666 -10.87329 -10.58401 -10.16746 -9.84967 -9.79812 -9.67485 -9.44356 -8.54157 -6.20522 -4.25581 -0.62153 -0.02776 0.84419 0.94232 2.08663 2.64172 2.94874 3.23862 3.28383 3.29658 3.31325 4.00534 4.08205 4.25436 4.29465 4.34480 4.54999 4.88045 5.11321 5.16477 5.33527 5.47045 5.54190 5.85662 5.90398 6.00358 6.44743 6.61949 6.91020 7.30218 7.38912 7.46712 7.69906 7.85320 8.10827 8.79450 9.39583 10.90824 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.003115 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.492172 B = 8987.891246 C = 9853.410684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.348 6.348 12 C 0.503 3.497 13 O -0.498 6.498 14 C -0.094 4.094 15 C -0.037 4.037 16 C 0.105 3.895 17 O -0.480 6.480 18 C -0.060 4.060 19 C -0.040 4.040 20 N 0.030 4.970 21 O -0.148 6.148 22 O -0.155 6.155 23 C -0.007 4.007 24 H 0.265 0.735 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.171 0.829 30 H 0.402 0.598 31 H 0.165 0.835 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 -18.862 -1.717 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.264 6.264 12 C 0.346 3.654 13 O -0.387 6.387 14 C -0.096 4.096 15 C -0.055 4.055 16 C 0.060 3.940 17 O -0.291 6.291 18 C -0.079 4.079 19 C -0.123 4.123 20 N 0.551 4.449 21 O -0.366 6.366 22 O -0.371 6.371 23 C -0.026 4.026 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.188 0.812 30 H 0.260 0.740 31 H 0.183 0.817 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.798 -18.049 -1.112 18.299 hybrid contribution 0.626 0.630 -0.472 1.006 sum -2.172 -17.419 -1.584 17.625 Atomic orbital electron populations 1.69955 1.06119 1.27268 1.49427 1.24978 0.94937 0.99451 0.94683 0.86507 0.79489 0.82319 0.78861 1.20009 1.21069 1.19998 1.20914 0.93194 0.89976 1.52723 0.92203 1.19188 0.94152 0.88856 0.98986 1.23827 0.96579 0.77780 1.01481 1.86556 1.41940 1.15570 1.82333 1.20593 0.85638 0.85164 0.74055 1.90865 1.14592 1.88098 1.45153 1.19001 0.92980 0.91260 1.06383 1.22414 0.93965 0.99585 0.89581 1.17922 0.84296 0.90317 1.01508 1.84915 1.14074 1.95725 1.34414 1.21498 0.90933 1.01612 0.93892 1.20616 0.91239 0.84789 1.15641 1.43456 1.01441 1.02311 0.97720 1.94594 0.95198 1.93901 1.52909 1.94546 1.74276 1.15039 1.53275 1.21099 1.03267 0.88240 0.89970 0.92546 0.95253 0.95235 0.91791 0.91788 0.81197 0.74039 0.81741 0.81125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 13.29 55.43 0.74 -24.67 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.53 -14.25 9.11 -34.44 -0.31 -14.57 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.62 5.35 -27.88 -0.15 0.47 16 10 C 0.08 1.53 5.41 37.16 0.20 1.74 16 11 O -0.35 -6.11 9.47 -40.51 -0.38 -6.49 16 12 C 0.50 7.85 7.90 34.61 0.27 8.12 16 13 O -0.50 -8.96 16.13 -19.25 -0.31 -9.27 16 14 C -0.09 -1.10 5.87 -105.00 -0.62 -1.72 16 15 C -0.04 -0.35 9.56 -39.01 -0.37 -0.72 16 16 C 0.11 0.83 6.70 -39.28 -0.26 0.57 16 17 O -0.48 -3.09 13.50 -19.45 -0.26 -3.35 16 18 C -0.06 -0.49 9.49 -39.34 -0.37 -0.86 16 19 C -0.04 -0.41 6.84 -80.03 -0.55 -0.96 16 20 N 0.03 0.36 4.45 33.92 0.15 0.51 16 21 O -0.15 -1.95 18.44 -29.46 -0.54 -2.49 16 22 O -0.16 -1.88 18.43 -29.46 -0.54 -2.42 16 23 C -0.01 -0.07 9.10 -39.16 -0.36 -0.43 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.17 1.57 7.61 -52.49 -0.40 1.17 16 30 H 0.40 0.58 9.06 45.56 0.41 0.99 16 31 H 0.17 1.06 7.59 -52.49 -0.40 0.67 16 32 H 0.17 1.92 7.19 -52.49 -0.38 1.55 16 LS Contribution 305.42 15.07 4.60 4.60 Total: -1.00 -31.46 305.42 -6.18 -37.64 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: -1.99 Total: -3.01 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -2.61 Total: -6.76 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.89 Total: -24.16 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -2.04 Total: -24.03 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.46 -6.18 -37.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769046826.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.081 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds