Wall clock time and date at job start Tue Mar 31 2020 05:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31387 * 1 3 3 Si 1.86800 * 119.99959 * 2 1 4 4 H 1.48504 * 109.47200 * 240.00394 * 3 2 1 5 5 H 1.48498 * 109.47006 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47393 * 120.00437 * 3 2 1 7 7 C 1.39020 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99544 * 199.62247 * 7 2 1 9 9 N 1.36907 * 119.99741 * 19.34451 * 7 2 1 10 10 C 1.34776 * 120.00262 * 42.34342 * 9 7 2 11 11 O 1.21625 * 119.99982 * 359.97438 * 10 9 7 12 12 C 1.47365 * 119.99781 * 179.97438 * 10 9 7 13 13 C 1.40271 * 120.20598 * 269.99529 * 12 10 9 14 14 O 1.35664 * 120.14675 * 359.97438 * 13 12 10 15 15 C 1.38599 * 119.70589 * 180.02562 * 13 12 10 16 16 C 1.38164 * 120.12945 * 359.97438 * 15 13 12 17 17 C 1.38450 * 120.41943 * 0.02951 * 16 15 13 18 18 C 1.37993 * 120.29180 * 359.71473 * 17 16 15 19 19 Cl 1.73596 * 120.06632 * 180.30035 * 18 17 16 20 20 C 1.46505 * 119.99814 * 222.33616 * 9 7 2 21 21 C 1.53005 * 117.49506 * 3.42976 * 20 9 7 22 22 C 1.52995 * 117.49894 * 294.76731 * 20 9 7 23 23 H 0.97002 * 119.99796 * 354.69165 * 1 2 3 24 24 H 0.96702 * 114.00174 * 89.99398 * 14 13 12 25 25 H 1.08008 * 119.93548 * 180.02562 * 15 13 12 26 26 H 1.08000 * 119.78949 * 180.02562 * 16 15 13 27 27 H 1.08002 * 119.84883 * 179.97438 * 17 16 15 28 28 H 1.08996 * 115.54545 * 149.08991 * 20 9 7 29 29 H 1.08991 * 117.50023 * 359.97438 * 21 20 9 30 30 H 1.09001 * 117.49176 * 145.02010 * 21 20 9 31 31 H 1.09006 * 117.49478 * 214.97425 * 22 20 9 32 32 H 1.08992 * 117.50260 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1016 1.6965 -1.2126 5 1 1.2828 2.7464 0.0006 6 1 3.1017 1.6964 1.2124 7 6 2.0090 -1.2040 -0.0005 8 1 3.0419 -1.2312 0.3136 9 7 1.3823 -2.3559 -0.3938 10 6 0.5734 -2.3488 -1.4718 11 8 0.3997 -1.3189 -2.0950 12 6 -0.1006 -3.5890 -1.8953 13 6 0.5209 -4.4534 -2.8086 14 8 1.7460 -4.1515 -3.3071 15 6 -0.1226 -5.6168 -3.2003 16 6 -1.3705 -5.9236 -2.6928 17 6 -1.9888 -5.0742 -1.7911 18 6 -1.3616 -3.9139 -1.3853 19 17 -2.1388 -2.8570 -0.2485 20 6 1.5912 -3.5964 0.3571 21 6 2.4563 -3.5224 1.6170 22 6 2.9990 -4.1956 0.3538 23 1 -0.4850 0.8365 0.0777 24 1 2.4805 -4.4983 -2.7824 25 1 0.3527 -6.2853 -3.9030 26 1 -1.8668 -6.8318 -3.0014 27 1 -2.9645 -5.3228 -1.4005 28 1 0.7495 -4.2888 0.3645 29 1 2.8702 -2.5509 1.8869 30 1 2.1838 -4.1665 2.4530 31 1 3.0833 -5.2824 0.3595 32 1 3.7696 -3.6673 -0.2073 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769731194.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:18 Heat of formation + Delta-G solvation = -8.525119 kcal Electronic energy + Delta-G solvation = -20433.756193 eV Core-core repulsion = 17194.355099 eV Total energy + Delta-G solvation = -3239.401095 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.78321 -37.97330 -36.65095 -35.95616 -35.53010 -32.77739 -31.22776 -30.21492 -29.48203 -25.28645 -23.09178 -22.27510 -21.74917 -21.10242 -19.63130 -18.18909 -17.03139 -16.09548 -15.79911 -15.63769 -14.78585 -14.62089 -14.20347 -14.00821 -13.70475 -13.09483 -12.83516 -12.56667 -12.26945 -11.83227 -11.64290 -11.12218 -10.94147 -10.86105 -10.82838 -10.65936 -10.38084 -10.21767 -10.16255 -10.00134 -9.77389 -8.71033 -8.52613 -8.35803 -8.00603 -7.02786 -6.05508 -3.81393 1.34726 1.35906 2.67615 3.32952 3.40750 3.44459 3.68957 4.03482 4.27796 4.44907 4.69357 4.78131 5.02433 5.18869 5.36099 5.46066 5.52662 5.55949 5.73476 5.79948 5.90568 6.06386 6.14861 6.32624 6.42457 6.47218 6.59742 6.68778 6.81556 6.90063 7.63535 7.91937 8.27005 9.05138 9.16215 9.65749 10.27739 11.00907 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.018316 B = 0.008174 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.323953 B = 3424.549464 C = 3820.681152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.354 4.354 8 H 0.079 0.921 9 N -0.411 5.411 10 C 0.528 3.472 11 O -0.513 6.513 12 C -0.105 4.105 13 C 0.139 3.861 14 O -0.484 6.484 15 C -0.151 4.151 16 C -0.098 4.098 17 C -0.131 4.131 18 C -0.005 4.005 19 Cl -0.032 7.032 20 C 0.075 3.925 21 C -0.170 4.170 22 C -0.212 4.212 23 H 0.264 0.736 24 H 0.390 0.610 25 H 0.131 0.869 26 H 0.131 0.869 27 H 0.132 0.868 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.798 -13.077 -0.341 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.481 4.481 8 H 0.097 0.903 9 N -0.131 5.131 10 C 0.314 3.686 11 O -0.389 6.389 12 C -0.110 4.110 13 C 0.093 3.907 14 O -0.294 6.294 15 C -0.169 4.169 16 C -0.117 4.117 17 C -0.150 4.150 18 C -0.033 4.033 19 Cl -0.003 7.003 20 C -0.031 4.031 21 C -0.207 4.207 22 C -0.252 4.252 23 H 0.074 0.926 24 H 0.247 0.753 25 H 0.149 0.851 26 H 0.149 0.851 27 H 0.150 0.850 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.467 -11.984 -1.070 12.121 hybrid contribution 0.513 0.555 0.559 0.939 sum -0.954 -11.429 -0.512 11.481 Atomic orbital electron populations 1.69852 1.06321 1.27362 1.41025 1.25216 0.94830 0.99209 0.94492 0.86303 0.79338 0.82153 0.78353 1.20022 1.21258 1.20519 1.18756 0.95178 0.84002 1.50139 0.90342 1.42572 1.42968 1.06008 1.21531 1.17167 0.83483 0.86070 0.81858 1.90664 1.62168 1.31646 1.54462 1.20916 0.95002 0.97856 0.97257 1.18333 0.87291 0.91702 0.93348 1.84780 1.13238 1.79236 1.52153 1.21355 0.96799 0.96650 1.02141 1.20901 0.94717 0.99301 0.96745 1.20983 1.00624 0.93777 0.99604 1.21026 0.93534 0.93133 0.95560 1.98439 1.79654 1.64414 1.57799 1.21639 0.92155 0.91289 0.98022 1.23053 1.04203 1.02610 0.90873 1.23373 0.99767 0.98693 1.03328 0.92621 0.75333 0.85065 0.85095 0.84990 0.88474 0.87323 0.89811 0.89849 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -23.70 11.63 55.50 0.65 -23.05 16 2 C 0.07 2.09 4.34 -17.45 -0.08 2.01 16 3 Si 0.91 22.02 29.60 -169.99 -5.03 16.99 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.35 -9.54 8.01 -15.00 -0.12 -9.66 16 8 H 0.08 2.03 7.16 -52.49 -0.38 1.65 16 9 N -0.41 -10.16 2.84 -108.96 -0.31 -10.47 16 10 C 0.53 13.70 5.00 -12.55 -0.06 13.63 16 11 O -0.51 -15.82 14.71 5.26 0.08 -15.75 16 12 C -0.11 -2.24 4.03 -104.82 -0.42 -2.67 16 13 C 0.14 2.51 6.72 -38.68 -0.26 2.25 16 14 O -0.48 -8.58 12.95 -18.69 -0.24 -8.82 16 15 C -0.15 -2.12 9.97 -39.48 -0.39 -2.51 16 16 C -0.10 -1.25 10.03 -39.53 -0.40 -1.65 16 17 C -0.13 -1.94 9.81 -39.59 -0.39 -2.33 16 18 C 0.00 -0.09 6.08 -39.07 -0.24 -0.33 16 19 Cl -0.03 -0.68 28.04 -51.86 -1.45 -2.13 16 20 C 0.08 1.50 5.89 -67.93 -0.40 1.10 16 21 C -0.17 -3.01 9.79 -26.69 -0.26 -3.27 16 22 C -0.21 -3.45 10.36 -26.69 -0.28 -3.73 16 23 H 0.26 7.47 8.32 -40.82 -0.34 7.13 16 24 H 0.39 5.23 9.06 45.56 0.41 5.64 16 25 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 26 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 27 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.10 1.87 7.10 -51.93 -0.37 1.50 16 29 H 0.11 2.13 6.68 -51.93 -0.35 1.78 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 298.04 15.07 4.49 4.49 Total: -1.00 -33.97 298.04 -7.47 -41.44 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -2.35 Total: 4.44 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -3.29 Total: -7.15 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.34 Total: -33.52 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.16 Total: -24.57 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.45 Total: -2.13 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.97 -7.47 -41.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769731194.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.913 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds