Wall clock time and date at job start Tue Mar 31 2020 05:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.40398 * 120.20696 * 80.55438 * 3 2 1 5 5 N 1.39037 * 120.17163 * 0.02653 * 4 3 2 6 6 C 1.46497 * 119.99817 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47068 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99912 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99911 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00266 * 359.97438 * 9 7 6 11 11 Si 1.86810 * 119.99735 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47126 * 59.99841 * 11 9 7 13 13 H 1.48498 * 109.46692 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47158 * 299.99929 * 11 9 7 15 15 C 1.38840 * 119.65420 * 180.02562 * 4 3 2 16 16 C 1.38060 * 120.07513 * 0.02562 * 15 4 3 17 17 C 1.38527 * 120.41862 * 359.97438 * 16 15 4 18 18 C 1.37841 * 120.34627 * 359.72232 * 17 16 15 19 19 S 1.76199 * 120.04248 * 180.30333 * 18 17 16 20 20 N 1.65595 * 107.21988 * 115.25729 * 19 18 17 21 21 O 1.42106 * 106.39962 * 228.79607 * 19 18 17 22 22 O 1.42096 * 106.40218 * 1.71450 * 19 18 17 23 23 H 0.97001 * 119.99727 * 359.97438 * 5 4 3 24 24 H 1.08995 * 109.47307 * 299.99916 * 6 5 4 25 25 H 1.09002 * 109.47253 * 59.99778 * 6 5 4 26 26 H 0.97004 * 120.00331 * 180.02562 * 10 9 7 27 27 H 1.08004 * 119.96222 * 179.97438 * 15 4 3 28 28 H 1.07999 * 119.79114 * 180.02562 * 16 15 4 29 29 H 1.08005 * 119.82834 * 180.02562 * 17 16 15 30 30 H 0.97004 * 120.00258 * 359.97438 * 20 19 18 31 31 H 0.97003 * 120.00318 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2744 -0.1982 -1.1969 5 7 2.5873 -0.3963 -2.3893 6 6 3.3283 -0.6028 -3.6360 7 6 2.3567 -0.7924 -4.7723 8 1 1.2936 -0.7616 -4.5845 9 6 2.8250 -1.0050 -6.0515 10 7 4.1195 -1.0420 -6.2802 11 14 1.6206 -1.2393 -7.4601 12 1 0.7662 -0.0314 -7.5870 13 1 2.3717 -1.4488 -8.7239 14 1 0.7664 -2.4235 -7.1893 15 6 4.6628 -0.1959 -1.1836 16 6 5.3430 0.0005 0.0017 17 6 4.6490 0.1970 1.1844 18 6 3.2706 0.2042 1.1901 19 16 2.3961 0.4628 2.6977 20 7 1.5733 1.8921 2.5482 21 8 1.4128 -0.5604 2.7717 22 8 3.3800 0.6692 3.7020 23 1 1.6173 -0.3977 -2.3955 24 1 3.9549 0.2666 -3.8346 25 1 3.9558 -1.4893 -3.5432 26 1 4.4490 -1.1912 -7.1803 27 1 5.2112 -0.3487 -2.1014 28 1 6.4230 0.0018 0.0066 29 1 5.1908 0.3501 2.1060 30 1 1.6398 2.4066 1.7286 31 1 1.0249 2.2149 3.2803 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784615985.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:17 Heat of formation + Delta-G solvation = -20.510837 kcal Electronic energy + Delta-G solvation = -19085.019508 eV Core-core repulsion = 15879.435131 eV Total energy + Delta-G solvation = -3205.584377 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.67231 -37.25205 -36.17026 -35.87456 -35.56907 -33.30321 -32.91485 -31.48141 -29.78489 -26.78537 -24.30771 -23.27244 -21.71783 -19.54978 -19.18448 -17.76718 -17.48750 -17.31689 -16.11154 -16.09619 -15.34258 -15.00879 -14.81540 -14.59475 -14.29815 -13.39944 -13.18453 -13.14425 -12.77649 -12.44096 -12.24109 -12.18552 -12.09502 -11.98957 -11.97979 -11.69611 -11.12251 -11.08965 -10.73523 -10.59557 -10.33629 -10.10334 -9.65449 -9.23261 -8.75386 -7.15766 -6.39657 -4.46368 0.28206 0.56774 1.43114 2.73091 3.00662 3.06109 3.14882 3.19891 3.22073 3.44108 3.86706 3.88875 3.99901 4.21818 4.59125 4.98689 5.01610 5.19256 5.36811 5.54270 5.58358 5.85305 5.96546 6.18106 6.40222 6.59834 6.84192 6.87960 7.08153 7.35909 7.55534 7.66729 7.79184 8.19814 8.60257 9.21341 10.70507 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.031145 B = 0.004299 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.815096 B = 6511.839109 C = 7222.891821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C 0.230 3.770 3 C -0.057 4.057 4 C 0.266 3.734 5 N -0.706 5.706 6 C 0.243 3.757 7 C -0.548 4.548 8 H 0.063 0.937 9 C 0.069 3.931 10 N -0.887 5.887 11 Si 0.906 3.094 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C -0.140 4.140 16 C -0.063 4.063 17 C -0.091 4.091 18 C -0.583 4.583 19 S 2.695 3.305 20 N -1.249 6.249 21 O -0.956 6.956 22 O -0.964 6.964 23 H 0.397 0.603 24 H 0.031 0.969 25 H 0.031 0.969 26 H 0.269 0.731 27 H 0.146 0.854 28 H 0.137 0.863 29 H 0.146 0.854 30 H 0.417 0.583 31 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.517 5.812 13.504 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.085 4.085 3 C -0.068 4.068 4 C 0.148 3.852 5 N -0.324 5.324 6 C 0.122 3.878 7 C -0.586 4.586 8 H 0.081 0.919 9 C -0.136 4.136 10 N -0.524 5.524 11 Si 0.732 3.268 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.199 1.199 15 C -0.163 4.163 16 C -0.084 4.084 17 C -0.114 4.114 18 C -0.673 4.673 19 S 2.784 3.216 20 N -0.924 5.924 21 O -0.945 6.945 22 O -0.953 6.953 23 H 0.232 0.768 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.079 0.921 27 H 0.164 0.836 28 H 0.155 0.845 29 H 0.163 0.837 30 H 0.245 0.755 31 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 1.085 4.991 13.828 14.741 hybrid contribution -0.448 0.294 -1.747 1.827 sum 0.637 5.285 12.081 13.202 Atomic orbital electron populations 1.81201 1.11477 1.08896 1.05194 1.25572 0.92599 0.94602 0.95708 1.14691 0.83572 1.15618 0.92945 1.17991 0.91983 0.89725 0.85532 1.45799 1.09323 1.71458 1.05819 1.19388 0.92853 0.96956 0.78581 1.21083 0.93062 1.52213 0.92196 0.91883 1.24889 0.95546 0.94305 0.98828 1.69901 1.12327 1.47814 1.22332 0.86428 0.80644 0.79013 0.80678 1.19942 1.20860 1.19917 1.21160 0.91757 1.03332 1.00025 1.21227 1.00337 0.95349 0.91503 1.20583 0.90998 1.00201 0.99588 1.30104 1.06023 1.15078 1.16114 1.01693 0.73697 0.72982 0.73179 1.52998 1.67769 1.43761 1.27851 1.93652 1.59450 1.55830 1.85581 1.93585 1.60894 1.85352 1.55490 0.76824 0.95089 0.95115 0.92130 0.83585 0.84510 0.83661 0.75549 0.75046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -7.03 18.54 41.83 0.78 -6.26 16 2 C 0.23 3.84 11.95 -22.47 -0.27 3.57 16 3 C -0.06 -0.87 5.75 -106.61 -0.61 -1.48 16 4 C 0.27 4.36 6.66 -83.56 -0.56 3.80 16 5 N -0.71 -13.46 5.63 -59.60 -0.34 -13.80 16 6 C 0.24 5.45 4.66 -5.20 -0.02 5.43 16 7 C -0.55 -13.86 9.28 -34.44 -0.32 -14.18 16 8 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 9 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -23.69 13.29 55.43 0.74 -22.95 16 11 Si 0.91 20.01 29.54 -169.99 -5.02 14.99 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 C -0.14 -1.99 9.29 -39.42 -0.37 -2.36 16 16 C -0.06 -0.72 10.03 -39.54 -0.40 -1.11 16 17 C -0.09 -1.06 9.53 -39.62 -0.38 -1.43 16 18 C -0.58 -7.65 5.91 -39.18 -0.23 -7.88 16 19 S 2.70 33.74 5.64 -107.50 -0.61 33.13 16 20 N -1.25 -11.23 9.43 60.35 0.57 -10.66 16 21 O -0.96 -15.55 16.77 -57.17 -0.96 -16.51 16 22 O -0.96 -13.36 16.96 -57.17 -0.97 -14.33 16 23 H 0.40 7.61 7.18 -40.82 -0.29 7.32 16 24 H 0.03 0.72 7.94 -51.93 -0.41 0.31 16 25 H 0.03 0.73 7.94 -51.93 -0.41 0.32 16 26 H 0.27 6.82 8.31 -40.82 -0.34 6.49 16 27 H 0.15 2.12 6.72 -52.48 -0.35 1.76 16 28 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.15 1.39 7.32 -52.48 -0.38 1.01 16 30 H 0.42 3.13 8.92 -34.47 -0.31 2.82 16 31 H 0.42 2.85 8.96 -34.47 -0.31 2.54 16 LS Contribution 294.57 15.07 4.44 4.44 Total: -1.00 -31.47 294.57 -7.05 -38.52 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -2.43 Total: 7.40 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -3.25 Total: -13.98 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 1.75 Total: -53.66 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -1.93 Total: -30.84 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 33.74 SS G_CDS: -0.61 Total: 33.13 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.47 -7.05 -38.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784615985.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.013 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds