Wall clock time and date at job start Tue Mar 31 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46940 * 2 1 4 4 C 1.50693 * 109.47119 * 239.99283 * 2 1 3 5 5 H 1.07998 * 120.00330 * 240.00005 * 4 2 1 6 6 C 1.37880 * 119.99690 * 60.00800 * 4 2 1 7 7 N 1.31516 * 120.00164 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99855 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47187 * 269.99443 * 8 6 4 10 10 H 1.48500 * 109.47547 * 29.99688 * 8 6 4 11 11 H 1.48498 * 109.47464 * 149.99589 * 8 6 4 12 12 N 1.46897 * 109.46613 * 119.99623 * 2 1 3 13 13 C 1.39678 * 111.00412 * 270.53200 * 12 2 1 14 14 C 1.38909 * 120.07519 * 275.46759 * 13 12 2 15 15 N 1.48020 * 120.03642 * 359.96735 * 14 13 12 16 16 O 1.21803 * 119.99624 * 174.56835 * 15 14 13 17 17 O 1.21798 * 120.00549 * 354.57333 * 15 14 13 18 18 C 1.38107 * 119.92076 * 179.73993 * 14 13 12 19 19 C 1.38275 * 120.07816 * 0.52558 * 18 14 13 20 20 C 1.38294 * 120.15019 * 359.72709 * 19 18 14 21 21 C 1.38100 * 120.07245 * 0.02562 * 20 19 18 22 22 N 1.48020 * 120.03702 * 180.02562 * 21 20 19 23 23 O 1.21795 * 120.00082 * 6.25771 * 22 21 20 24 24 O 1.21802 * 119.99767 * 186.26001 * 22 21 20 25 25 H 1.08999 * 109.46960 * 60.00446 * 1 2 3 26 26 H 1.08999 * 109.47630 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47054 * 300.00618 * 1 2 3 28 28 H 0.96997 * 119.99635 * 180.02562 * 7 6 4 29 29 H 1.00898 * 111.00826 * 34.49105 * 12 2 1 30 30 H 1.08003 * 119.95854 * 180.25556 * 18 14 13 31 31 H 1.08003 * 119.92727 * 179.74273 * 19 18 14 32 32 H 1.07995 * 119.96160 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9430 0.8296 -2.6034 8 14 2.3226 -1.1198 -4.0077 9 1 3.6306 -0.5443 -4.4117 10 1 2.4880 -2.5656 -3.7120 11 1 1.3446 -0.9493 -5.1121 12 7 2.0196 -0.6924 1.1995 13 6 2.1750 0.1988 2.2637 14 6 3.3446 0.9379 2.3876 15 7 4.4288 0.7815 1.3921 16 8 5.4113 1.4996 1.4439 17 8 4.3386 -0.0651 0.5211 18 6 3.4927 1.8222 3.4380 19 6 2.4829 1.9643 4.3719 20 6 1.3193 1.2262 4.2545 21 6 1.1625 0.3439 3.2037 22 7 -0.0835 -0.4452 3.0784 23 8 -1.0156 -0.2356 3.8338 24 8 -0.1765 -1.3043 2.2200 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7084 1.1607 -3.4844 29 1 1.4082 -1.4542 1.4523 30 1 4.4002 2.4001 3.5327 31 1 2.6031 2.6535 5.1947 32 1 0.5324 1.3400 4.9853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804404240.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:18 Heat of formation + Delta-G solvation = 34.237831 kcal Electronic energy + Delta-G solvation = -22942.460414 eV Core-core repulsion = 19296.497246 eV Total energy + Delta-G solvation = -3645.963167 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.71661 -43.04339 -40.83582 -38.59211 -37.57321 -37.10564 -34.86447 -33.67343 -32.29726 -29.81975 -27.75470 -27.44459 -27.18802 -23.90250 -23.73069 -22.44500 -20.94686 -20.04839 -19.31552 -19.08674 -18.99018 -18.80979 -18.34656 -17.97553 -17.08573 -16.70439 -16.01732 -15.51118 -14.63332 -14.45576 -14.27928 -13.85352 -13.70415 -13.26521 -13.04250 -12.82790 -12.72506 -12.56628 -12.50215 -12.40785 -12.10205 -12.07775 -12.00995 -11.92325 -11.39982 -11.23877 -10.75786 -10.54188 -9.54667 -8.17201 -6.25259 -1.55156 -1.18000 -0.08269 0.01856 0.23420 0.52700 1.42665 1.44642 1.55087 1.82938 2.40120 2.65682 2.97438 3.13177 3.19823 3.52461 3.56495 3.68060 4.22065 4.37943 4.51051 4.56509 4.59277 4.68730 4.93177 5.02569 5.13559 5.35906 5.50403 5.64101 5.98618 6.14836 6.27151 6.41918 6.64436 6.82402 7.41696 8.89836 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016868 B = 0.007899 C = 0.005848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.508921 B = 3543.805532 C = 4786.795325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.252 3.748 3 H -0.009 1.009 4 C -0.495 4.495 5 H 0.061 0.939 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.964 3.036 9 H -0.280 1.280 10 H -0.266 1.266 11 H -0.281 1.281 12 N -0.637 5.637 13 C 0.231 3.769 14 C -0.090 4.090 15 N 0.028 4.972 16 O -0.181 6.181 17 O -0.145 6.145 18 C 0.020 3.980 19 C -0.113 4.113 20 C 0.026 3.974 21 C -0.127 4.127 22 N 0.040 4.960 23 O -0.117 6.117 24 O -0.217 6.217 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.003 0.997 28 H 0.263 0.737 29 H 0.373 0.627 30 H 0.198 0.802 31 H 0.230 0.770 32 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.608 4.847 18.335 19.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.149 3.851 3 H 0.009 0.991 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.790 3.210 9 H -0.206 1.206 10 H -0.191 1.191 11 H -0.207 1.207 12 N -0.273 5.273 13 C 0.123 3.877 14 C -0.177 4.177 15 N 0.544 4.456 16 O -0.391 6.391 17 O -0.362 6.362 18 C 0.001 3.999 19 C -0.132 4.132 20 C 0.007 3.993 21 C -0.215 4.215 22 N 0.554 4.446 23 O -0.345 6.345 24 O -0.410 6.410 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.022 0.978 28 H 0.072 0.928 29 H 0.207 0.793 30 H 0.215 0.785 31 H 0.246 0.754 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.259 5.228 18.312 19.177 hybrid contribution -0.633 -0.774 -1.461 1.770 sum 1.626 4.454 16.851 17.505 Atomic orbital electron populations 1.22293 0.97955 1.00420 0.99113 1.18886 0.90120 0.91268 0.84829 0.99133 1.21178 1.29813 1.12613 0.89773 0.92043 1.25682 0.95331 0.95929 1.01912 1.69978 1.38123 1.24366 1.24252 0.85447 0.77803 0.79216 0.78545 1.20560 1.19089 1.20663 1.58118 1.55132 1.10610 1.03443 1.18739 0.89681 0.87795 0.91455 1.21180 0.89163 1.10054 0.97297 1.43553 1.01248 0.99723 1.01088 1.94392 1.22178 1.42868 1.79622 1.94847 1.85264 1.28402 1.27699 1.22011 1.02052 0.88858 0.86945 1.21800 0.89456 1.01051 1.00906 1.21994 0.99734 0.85701 0.91911 1.21634 0.86345 1.06639 1.06902 1.43479 1.02163 1.00137 0.98846 1.94442 1.30068 1.71571 1.38448 1.94430 1.87996 1.28917 1.29687 0.91191 0.93059 0.97826 0.92836 0.79328 0.78505 0.75391 0.77859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.98 7.50 71.98 0.54 -6.44 16 2 C 0.25 13.13 1.72 44.17 0.08 13.21 16 3 H -0.01 -0.53 7.69 -2.39 -0.02 -0.55 16 4 C -0.50 -28.33 7.93 25.60 0.20 -28.12 16 5 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 6 C 0.01 0.53 5.30 84.65 0.45 0.98 16 7 N -0.93 -54.40 11.32 21.45 0.24 -54.16 16 8 Si 0.96 45.87 29.54 68.60 2.03 47.89 16 9 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 N -0.64 -28.52 4.46 -321.70 -1.43 -29.95 16 13 C 0.23 8.32 5.07 38.21 0.19 8.52 16 14 C -0.09 -2.91 6.74 36.50 0.25 -2.66 16 15 N 0.03 1.12 4.45 -46.15 -0.21 0.92 16 16 O -0.18 -6.79 18.46 18.88 0.35 -6.44 16 17 O -0.14 -7.10 15.49 18.89 0.29 -6.81 16 18 C 0.02 0.37 9.55 22.25 0.21 0.58 16 19 C -0.11 -1.11 10.04 22.29 0.22 -0.89 16 20 C 0.03 0.40 9.55 22.25 0.21 0.61 16 21 C -0.13 -3.63 6.53 36.50 0.24 -3.39 16 22 N 0.04 1.33 3.68 -46.15 -0.17 1.16 16 23 O -0.12 -3.44 18.47 18.89 0.35 -3.09 16 24 O -0.22 -8.51 12.22 18.88 0.23 -8.27 16 25 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 26 H 0.05 2.55 7.14 -2.39 -0.02 2.53 16 27 H 0.00 0.13 6.29 -2.38 -0.02 0.11 16 28 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.37 16.40 5.19 -96.20 -0.50 15.90 16 30 H 0.20 2.36 7.62 -2.91 -0.02 2.34 16 31 H 0.23 -0.50 8.06 -2.91 -0.02 -0.52 16 32 H 0.20 1.62 7.62 -2.91 -0.02 1.60 16 Total: -1.00 -74.94 281.14 4.97 -69.96 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 0.70 Total: 6.40 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 2.59 Total: -17.61 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -1.57 Total: -82.03 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: 1.22 Total: -24.62 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -74.94 4.97 -69.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804404240.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.202 kcal (2) G-P(sol) polarization free energy of solvation -74.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds