Wall clock time and date at job start Tue Mar 31 2020 05:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86804 * 120.00125 * 2 1 4 4 H 1.48503 * 109.47024 * 274.66721 * 3 2 1 5 5 H 1.48499 * 109.46941 * 34.66691 * 3 2 1 6 6 H 1.48495 * 109.47142 * 154.66340 * 3 2 1 7 7 C 1.40227 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99909 * 162.20546 * 7 2 1 9 9 C 1.41107 * 120.00223 * 342.20297 * 7 2 1 10 10 C 1.40887 * 120.10458 * 155.06563 * 9 7 2 11 11 C 1.36322 * 119.88928 * 180.02562 * 10 9 7 12 12 C 1.40017 * 120.10598 * 0.02562 * 11 10 9 13 13 C 1.47643 * 119.89303 * 179.97438 * 12 11 10 14 14 O 1.21593 * 119.99961 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00214 * 179.97438 * 13 12 11 16 16 O 1.41596 * 120.00100 * 179.97438 * 15 13 12 17 17 C 1.42899 * 113.99839 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.47274 * 180.02562 * 17 16 15 19 19 C 1.31158 * 119.99932 * 135.27336 * 18 17 16 20 20 Cl 1.73601 * 120.00400 * 359.72902 * 19 18 17 21 21 C 1.40007 * 120.20954 * 0.23564 * 12 11 10 22 22 C 1.36314 * 120.10821 * 359.47721 * 21 12 11 23 23 H 0.97000 * 120.00232 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.05278 * 0.02562 * 10 9 7 25 25 H 1.07999 * 119.94208 * 180.02562 * 11 10 9 26 26 H 0.97001 * 119.99522 * 0.02562 * 15 13 12 27 27 H 1.09005 * 109.47322 * 60.00257 * 17 16 15 28 28 H 1.09004 * 109.47694 * 300.00394 * 17 16 15 29 29 H 1.07999 * 119.99800 * 315.00536 * 18 17 16 30 30 H 1.08007 * 119.99669 * 179.72570 * 19 18 17 31 31 H 1.07999 * 119.94323 * 179.72479 * 21 12 11 32 32 H 1.08004 * 120.05615 * 180.25681 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.3893 2.1034 -1.3955 5 1 1.4907 2.6222 0.7964 6 1 3.5838 1.4137 0.5991 7 6 2.0076 -1.2144 -0.0005 8 1 3.0489 -1.2366 -0.2864 9 6 1.3527 -2.4074 0.3724 10 6 1.8230 -3.6488 -0.0992 11 6 1.1867 -4.7986 0.2634 12 6 0.0672 -4.7470 1.1028 13 6 -0.6187 -5.9951 1.4921 14 8 -0.2115 -7.0655 1.0836 15 7 -1.6961 -5.9481 2.3004 16 8 -2.3542 -7.1450 2.6733 17 6 -3.4795 -6.9465 3.5314 18 6 -4.0995 -8.2793 3.8634 19 6 -4.4497 -8.5504 5.0980 20 17 -4.1927 -7.3766 6.3509 21 6 -0.4071 -3.5152 1.5696 22 6 0.2261 -2.3606 1.2171 23 1 -0.4850 0.8400 0.0004 24 1 2.6862 -3.6895 -0.7470 25 1 1.5468 -5.7508 -0.0973 26 1 -2.0212 -5.0941 2.6259 27 1 -4.2146 -6.3189 3.0274 28 1 -3.1543 -6.4585 4.4503 29 1 -4.2594 -9.0096 3.0840 30 1 -4.8981 -9.5040 5.3351 31 1 -1.2736 -3.4801 2.2132 32 1 -0.1381 -1.4112 1.5811 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812402977.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:40 Heat of formation + Delta-G solvation = -4.454598 kcal Electronic energy + Delta-G solvation = -18250.911579 eV Core-core repulsion = 15011.686996 eV Total energy + Delta-G solvation = -3239.224583 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.04026 -37.76853 -37.10329 -36.50331 -33.94008 -33.83592 -31.70026 -29.79131 -29.49640 -26.42454 -25.57912 -22.20816 -21.02956 -20.63891 -19.64869 -18.21204 -17.57544 -16.56487 -16.43175 -15.56961 -15.36252 -14.45377 -14.33134 -14.05359 -13.58505 -13.36122 -13.19069 -12.80121 -12.66414 -12.21264 -12.08468 -11.92985 -11.46797 -11.33001 -11.30011 -11.02164 -10.74984 -10.65909 -10.12379 -9.63237 -9.52412 -9.41234 -9.09214 -8.47946 -7.80046 -7.62148 -7.10130 -4.66932 1.37169 1.96029 2.15776 2.40708 2.86978 2.91655 2.96952 2.97992 3.69567 3.81890 4.38720 4.50516 4.76110 4.91075 5.12866 5.28571 5.49836 5.69711 5.78482 5.85521 5.95122 6.25192 6.70791 6.76238 6.92998 7.04507 7.21284 7.35896 7.53880 7.67956 7.78919 7.99526 8.06014 8.32548 8.56316 8.67617 9.04081 9.81849 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.026106 B = 0.003124 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.283846 B = 8960.187302 C = 9773.412638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.439 4.439 8 H 0.086 0.914 9 C 0.129 3.871 10 C -0.237 4.237 11 C -0.017 4.017 12 C -0.276 4.276 13 C 0.585 3.415 14 O -0.556 6.556 15 N -0.605 5.605 16 O -0.148 6.148 17 C 0.049 3.951 18 C -0.129 4.129 19 C -0.097 4.097 20 Cl -0.090 7.090 21 C -0.064 4.064 22 C -0.176 4.176 23 H 0.287 0.713 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.404 0.596 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.147 0.853 30 H 0.157 0.843 31 H 0.088 0.912 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 -5.598 8.267 13.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.466 4.466 8 H 0.104 0.896 9 C 0.126 3.874 10 C -0.256 4.256 11 C -0.036 4.036 12 C -0.281 4.281 13 C 0.380 3.620 14 O -0.435 6.435 15 N -0.310 5.310 16 O -0.152 6.152 17 C -0.028 4.028 18 C -0.149 4.149 19 C -0.141 4.141 20 Cl -0.062 7.062 21 C -0.083 4.083 22 C -0.195 4.195 23 H 0.099 0.901 24 H 0.119 0.881 25 H 0.122 0.878 26 H 0.245 0.755 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.165 0.835 30 H 0.175 0.825 31 H 0.106 0.894 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.608 -6.303 8.005 13.339 hybrid contribution -0.309 1.260 0.365 1.347 sum -8.918 -5.044 8.370 13.230 Atomic orbital electron populations 1.69736 1.07954 1.30183 1.31355 1.26122 0.94829 1.01986 0.91827 0.86194 0.80863 0.79808 0.79444 1.19179 1.19703 1.18024 1.19882 0.98460 0.91140 1.37131 0.89553 1.17799 0.90304 0.92230 0.87080 1.20718 1.04672 0.92496 1.07751 1.20334 0.92545 0.97413 0.93314 1.18588 1.04625 0.89552 1.15341 1.18737 0.76968 0.90325 0.75921 1.90662 1.65580 1.31342 1.55963 1.47741 1.30337 0.99440 1.53484 1.90534 1.43228 1.12867 1.68546 1.22030 0.89224 0.96092 0.95465 1.22812 0.97721 0.97954 0.96442 1.24545 1.04829 0.95859 0.88879 1.98375 1.95045 1.58931 1.53815 1.20459 0.97363 0.92586 0.97929 1.20969 0.99809 0.96866 1.01886 0.90135 0.88089 0.87797 0.75458 0.90692 0.90591 0.83527 0.82530 0.89407 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.90 10.97 55.56 0.61 -17.29 16 2 C 0.07 1.68 5.13 -17.31 -0.09 1.59 16 3 Si 0.91 16.78 29.60 -169.99 -5.03 11.75 16 4 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 6 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 7 C -0.44 -10.61 9.04 -37.75 -0.34 -10.95 16 8 H 0.09 1.99 7.91 -52.48 -0.42 1.57 16 9 C 0.13 3.20 5.57 -106.80 -0.60 2.61 16 10 C -0.24 -5.59 9.73 -39.27 -0.38 -5.97 16 11 C -0.02 -0.39 9.52 -39.61 -0.38 -0.77 16 12 C -0.28 -6.26 5.89 -104.73 -0.62 -6.88 16 13 C 0.58 13.04 7.91 -12.42 -0.10 12.94 16 14 O -0.56 -14.17 16.73 -12.87 -0.22 -14.38 16 15 N -0.61 -11.07 6.34 30.48 0.19 -10.87 16 16 O -0.15 -2.55 11.09 -29.62 -0.33 -2.88 16 17 C 0.05 0.59 6.42 36.01 0.23 0.82 16 18 C -0.13 -1.24 9.90 -36.07 -0.36 -1.59 16 19 C -0.10 -0.79 10.82 28.97 0.31 -0.48 16 20 Cl -0.09 -0.86 27.03 -51.86 -1.40 -2.26 16 21 C -0.06 -1.38 9.47 -39.61 -0.38 -1.76 16 22 C -0.18 -4.18 8.63 -39.27 -0.34 -4.52 16 23 H 0.29 5.99 8.29 -40.82 -0.34 5.66 16 24 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 25 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 26 H 0.40 6.17 6.54 -40.82 -0.27 5.91 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.89 6.19 -51.93 -0.32 0.57 16 29 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 30 H 0.16 0.84 8.06 -52.48 -0.42 0.41 16 31 H 0.09 1.57 6.37 -52.49 -0.33 1.24 16 32 H 0.12 2.90 6.17 -52.48 -0.32 2.58 16 LS Contribution 302.54 15.07 4.56 4.56 Total: -1.00 -29.25 302.54 -7.53 -36.78 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -2.89 Total: 9.56 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -3.03 Total: -14.97 kcal Atomic # 7 Polarization: -28.96 SS G_CDS: 0.80 Total: -28.16 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.54 Total: -17.27 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.40 Total: -2.26 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.25 -7.53 -36.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812402977.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.329 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds