Wall clock time and date at job start Tue Mar 31 2020 05:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86804 * 120.00125 * 2 1 4 4 H 1.48503 * 109.47024 * 274.66721 * 3 2 1 5 5 H 1.48499 * 109.46941 * 34.66691 * 3 2 1 6 6 H 1.48495 * 109.47142 * 154.66340 * 3 2 1 7 7 C 1.40227 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99909 * 162.20546 * 7 2 1 9 9 C 1.41107 * 120.00223 * 342.20297 * 7 2 1 10 10 C 1.40887 * 120.10458 * 155.06563 * 9 7 2 11 11 C 1.36322 * 119.88928 * 180.02562 * 10 9 7 12 12 C 1.40017 * 120.10598 * 0.02562 * 11 10 9 13 13 C 1.47643 * 119.89303 * 179.97438 * 12 11 10 14 14 O 1.21593 * 119.99961 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00214 * 179.97438 * 13 12 11 16 16 O 1.41596 * 120.00100 * 179.97438 * 15 13 12 17 17 C 1.42899 * 113.99839 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.47274 * 180.02562 * 17 16 15 19 19 C 1.31158 * 119.99932 * 135.27336 * 18 17 16 20 20 Cl 1.73601 * 120.00400 * 359.72902 * 19 18 17 21 21 C 1.40007 * 120.20954 * 0.23564 * 12 11 10 22 22 C 1.36314 * 120.10821 * 359.47721 * 21 12 11 23 23 H 0.97000 * 120.00232 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.05278 * 0.02562 * 10 9 7 25 25 H 1.07999 * 119.94208 * 180.02562 * 11 10 9 26 26 H 0.97001 * 119.99522 * 0.02562 * 15 13 12 27 27 H 1.09005 * 109.47322 * 60.00257 * 17 16 15 28 28 H 1.09004 * 109.47694 * 300.00394 * 17 16 15 29 29 H 1.07999 * 119.99800 * 315.00536 * 18 17 16 30 30 H 1.08007 * 119.99669 * 179.72570 * 19 18 17 31 31 H 1.07999 * 119.94323 * 179.72479 * 21 12 11 32 32 H 1.08004 * 120.05615 * 180.25681 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.3893 2.1034 -1.3955 5 1 1.4907 2.6222 0.7964 6 1 3.5838 1.4137 0.5991 7 6 2.0076 -1.2144 -0.0005 8 1 3.0489 -1.2366 -0.2864 9 6 1.3527 -2.4074 0.3724 10 6 1.8230 -3.6488 -0.0992 11 6 1.1867 -4.7986 0.2634 12 6 0.0672 -4.7470 1.1028 13 6 -0.6187 -5.9951 1.4921 14 8 -0.2115 -7.0655 1.0836 15 7 -1.6961 -5.9481 2.3004 16 8 -2.3542 -7.1450 2.6733 17 6 -3.4795 -6.9465 3.5314 18 6 -4.0995 -8.2793 3.8634 19 6 -4.4497 -8.5504 5.0980 20 17 -4.1927 -7.3766 6.3509 21 6 -0.4071 -3.5152 1.5696 22 6 0.2261 -2.3606 1.2171 23 1 -0.4850 0.8400 0.0004 24 1 2.6862 -3.6895 -0.7470 25 1 1.5468 -5.7508 -0.0973 26 1 -2.0212 -5.0941 2.6259 27 1 -4.2146 -6.3189 3.0274 28 1 -3.1543 -6.4585 4.4503 29 1 -4.2594 -9.0096 3.0840 30 1 -4.8981 -9.5040 5.3351 31 1 -1.2736 -3.4801 2.2132 32 1 -0.1381 -1.4112 1.5811 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812402977.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:40 Heat of formation + Delta-G solvation = -20.335893 kcal Electronic energy + Delta-G solvation = -18251.600244 eV Core-core repulsion = 15011.686996 eV Total energy + Delta-G solvation = -3239.913248 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.71650 -39.16724 -38.44228 -37.62197 -35.69697 -34.83096 -33.20516 -31.48479 -31.27378 -27.83421 -26.90419 -23.93539 -22.81676 -21.81236 -20.93813 -19.60960 -19.33862 -18.12169 -17.45109 -17.18526 -16.55480 -16.00928 -15.76880 -15.58213 -15.09448 -14.79531 -14.61393 -14.29160 -13.89511 -13.70412 -13.48866 -13.25077 -12.87258 -12.82571 -12.68291 -12.40599 -12.31999 -11.79907 -11.60522 -11.39413 -11.12990 -10.88620 -10.28320 -9.96004 -9.59705 -9.43445 -8.80928 -6.49646 0.39030 0.53956 1.13327 1.14490 1.30700 1.39751 1.43711 1.56553 2.07486 2.18095 2.75482 3.52023 3.67094 3.76221 4.03362 4.07108 4.22848 4.28471 4.43456 4.57281 4.92266 4.99418 5.01874 5.11343 5.13504 5.26576 5.56755 5.72729 5.82330 5.88511 5.97804 6.20559 6.46802 6.52552 6.75626 6.86337 7.38937 8.14229 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.026106 B = 0.003124 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.283846 B = 8960.187302 C = 9773.412638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.257 1.257 7 C -0.467 4.467 8 H 0.088 0.912 9 C 0.103 3.897 10 C -0.250 4.250 11 C -0.027 4.027 12 C -0.286 4.286 13 C 0.585 3.415 14 O -0.595 6.595 15 N -0.591 5.591 16 O -0.167 6.167 17 C 0.042 3.958 18 C -0.148 4.148 19 C -0.078 4.078 20 Cl -0.103 7.103 21 C -0.053 4.053 22 C -0.195 4.195 23 H 0.298 0.702 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.419 0.581 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.160 0.840 30 H 0.191 0.809 31 H 0.125 0.875 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.876 -5.095 9.250 14.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.181 1.181 7 C -0.494 4.494 8 H 0.106 0.894 9 C 0.100 3.900 10 C -0.269 4.269 11 C -0.046 4.046 12 C -0.290 4.290 13 C 0.380 3.620 14 O -0.478 6.478 15 N -0.295 5.295 16 O -0.172 6.172 17 C -0.035 4.035 18 C -0.168 4.168 19 C -0.122 4.122 20 Cl -0.075 7.075 21 C -0.072 4.072 22 C -0.214 4.214 23 H 0.110 0.890 24 H 0.127 0.873 25 H 0.123 0.877 26 H 0.263 0.737 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.178 0.822 30 H 0.208 0.792 31 H 0.143 0.857 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.766 -5.789 9.017 14.498 hybrid contribution -0.086 1.027 0.124 1.038 sum -9.852 -4.761 9.141 14.258 Atomic orbital electron populations 1.69749 1.09221 1.31773 1.30968 1.26928 0.95549 1.04829 0.90795 0.85104 0.79301 0.75321 0.79606 1.18638 1.18603 1.18072 1.20166 0.98840 0.92119 1.38287 0.89408 1.18152 0.91171 0.92898 0.87795 1.20860 1.05249 0.92512 1.08289 1.20473 0.93063 0.97361 0.93696 1.18769 1.04622 0.90408 1.15250 1.18567 0.77705 0.89453 0.76245 1.90633 1.67025 1.32446 1.57688 1.47300 1.29317 1.00852 1.51983 1.90531 1.44918 1.12063 1.69675 1.22349 0.88028 0.98240 0.94844 1.22841 0.99119 0.97352 0.97490 1.24999 1.03190 0.96227 0.87792 1.98383 1.95034 1.59741 1.54374 1.20714 0.97817 0.91361 0.97352 1.21012 1.00371 0.97378 1.02679 0.89043 0.87343 0.87674 0.73747 0.89226 0.90285 0.82242 0.79223 0.85740 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.61 10.97 21.87 0.24 -36.37 16 2 C 0.04 1.73 5.13 85.35 0.44 2.17 16 3 Si 0.99 33.58 29.60 68.60 2.03 35.61 16 4 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 5 H -0.26 -8.41 7.11 99.48 0.71 -7.70 16 6 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 7 C -0.47 -22.83 9.04 23.46 0.21 -22.62 16 8 H 0.09 4.10 7.91 -2.91 -0.02 4.08 16 9 C 0.10 5.20 5.57 -21.28 -0.12 5.08 16 10 C -0.25 -12.07 9.73 22.47 0.22 -11.85 16 11 C -0.03 -1.26 9.52 22.25 0.21 -1.05 16 12 C -0.29 -12.96 5.89 -19.93 -0.12 -13.07 16 13 C 0.59 25.94 7.91 86.73 0.69 26.62 16 14 O -0.60 -30.57 16.73 13.35 0.22 -30.34 16 15 N -0.59 -20.91 6.34 -175.73 -1.11 -22.02 16 16 O -0.17 -5.56 11.09 -21.42 -0.24 -5.79 16 17 C 0.04 0.93 6.42 71.24 0.46 1.39 16 18 C -0.15 -2.50 9.90 25.49 0.25 -2.25 16 19 C -0.08 -1.06 10.82 67.62 0.73 -0.33 16 20 Cl -0.10 -1.78 27.03 -2.72 -0.07 -1.85 16 21 C -0.05 -2.27 9.47 22.25 0.21 -2.06 16 22 C -0.20 -9.31 8.63 22.47 0.19 -9.11 16 23 H 0.30 12.16 8.29 -92.71 -0.77 11.39 16 24 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 25 H 0.11 4.86 7.63 -2.91 -0.02 4.83 16 26 H 0.42 11.99 6.54 -92.71 -0.61 11.38 16 27 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.08 1.71 6.19 -2.38 -0.01 1.69 16 29 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 30 H 0.19 1.31 8.06 -2.91 -0.02 1.28 16 31 H 0.12 4.21 6.37 -2.91 -0.02 4.19 16 32 H 0.12 5.60 6.17 -2.91 -0.02 5.58 16 Total: -1.00 -63.25 302.54 5.00 -58.24 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.56 Total: 29.61 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 3.38 Total: -27.08 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.87 Total: -58.39 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -0.01 Total: -36.14 kcal Atomic # 14 Polarization: 33.58 SS G_CDS: 2.03 Total: 35.61 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.07 Total: -1.85 kcal Total: -63.25 5.00 -58.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812402977.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.909 kcal (2) G-P(sol) polarization free energy of solvation -63.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds