Wall clock time and date at job start Tue Mar 31 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40075 * 126.03773 * 2 1 4 4 C 1.30836 * 108.24111 * 180.15246 * 3 2 1 5 5 C 1.50699 * 125.89245 * 179.88617 * 4 3 2 6 6 N 1.46503 * 109.47269 * 304.69297 * 5 4 3 7 7 C 1.35312 * 125.86851 * 124.99868 * 6 5 4 8 8 C 1.35341 * 106.17598 * 180.02562 * 7 6 5 9 9 C 1.50700 * 126.75090 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46869 * 125.00400 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 9 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 9 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 N 1.33772 * 106.49948 * 0.26771 * 8 7 6 19 19 N 1.28637 * 108.88114 * 359.55958 * 18 8 7 20 20 C 1.39858 * 108.21524 * 359.62555 * 4 3 2 21 21 C 1.34986 * 126.03466 * 179.73710 * 2 1 3 22 22 Cl 1.73598 * 126.14289 * 0.03117 * 21 2 1 23 23 H 1.09000 * 109.47007 * 270.26411 * 1 2 3 24 24 H 1.09003 * 109.47243 * 30.26672 * 1 2 3 25 25 H 1.09003 * 109.46962 * 150.26499 * 1 2 3 26 26 H 1.09004 * 109.46863 * 184.69531 * 5 4 3 27 27 H 1.08991 * 109.47272 * 64.69534 * 5 4 3 28 28 H 1.08004 * 126.90917 * 0.06144 * 7 6 5 29 29 H 1.09004 * 109.47210 * 5.00693 * 9 8 7 30 30 H 1.08994 * 109.47551 * 245.00345 * 9 8 7 31 31 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 32 32 H 1.08007 * 126.04952 * 180.21218 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5348 0.7328 -0.0033 5 6 4.7492 1.6252 -0.0069 6 7 4.6741 2.5475 -1.1427 7 6 4.7464 3.8970 -1.0743 8 6 4.6335 4.3456 -2.3462 9 6 4.6542 5.7822 -2.8008 10 6 5.7239 5.9627 -3.8468 11 1 6.3281 5.1212 -4.1522 12 6 5.9272 7.2009 -4.4186 13 7 6.8571 7.3571 -5.3354 14 14 4.8818 8.6562 -3.8908 15 1 5.5372 9.3497 -2.7529 16 1 4.7368 9.5999 -5.0284 17 1 3.5405 8.1762 -3.4719 18 7 4.4934 3.2632 -3.1198 19 7 4.5272 2.2135 -2.3770 20 6 3.5451 -0.6657 0.0032 21 6 2.2591 -1.0916 0.0050 22 17 1.7278 -2.7442 0.0118 23 1 -0.3633 0.0047 1.0277 24 1 -0.3634 0.8876 -0.5180 25 1 -0.3633 -0.8924 -0.5097 26 1 5.6483 1.0149 -0.0934 27 1 4.7844 2.1946 0.9217 28 1 4.8701 4.4956 -0.1839 29 1 4.8653 6.4297 -1.9497 30 1 3.6843 6.0434 -3.2242 31 1 7.0003 8.2282 -5.7373 32 1 4.4230 -1.2949 0.0057 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881300385.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:04 Heat of formation + Delta-G solvation = 177.408316 kcal Electronic energy + Delta-G solvation = -18588.885049 eV Core-core repulsion = 15422.132136 eV Total energy + Delta-G solvation = -3166.752914 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.56792 -41.60500 -37.32968 -35.34532 -33.55515 -32.78745 -31.22936 -30.36197 -29.03002 -27.79753 -25.94266 -23.08386 -21.83895 -21.64722 -20.76095 -19.60076 -17.69663 -16.88693 -16.64209 -16.04026 -15.80024 -15.02517 -14.49732 -14.29960 -14.05396 -13.60352 -13.51874 -13.23300 -12.88773 -12.79950 -12.29967 -12.11209 -12.02356 -11.98313 -11.10875 -10.96203 -10.59934 -10.56560 -10.07651 -9.82110 -9.64729 -9.38006 -9.27404 -9.01628 -8.49521 -8.19534 -5.95880 -3.93482 1.03048 1.22775 1.98758 2.12663 2.31967 2.96432 3.34660 3.42869 3.44985 3.48229 3.86683 4.39371 4.50167 4.57242 4.73502 4.85397 4.99223 5.04198 5.15417 5.20140 5.36508 5.37761 5.76377 5.99230 6.01211 6.24923 6.27385 6.91596 7.06675 7.15327 7.18898 7.26850 7.77777 8.62270 9.12633 9.30469 9.63463 11.17727 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.039389 B = 0.003222 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.689069 B = 8687.730171 C = 8917.523004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.360 5.360 3 N -0.244 5.244 4 C 0.065 3.935 5 C 0.207 3.793 6 N -0.302 5.302 7 C -0.074 4.074 8 C 0.038 3.962 9 C 0.060 3.940 10 C -0.505 4.505 11 H 0.076 0.924 12 C 0.067 3.933 13 N -0.902 5.902 14 Si 0.876 3.124 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.264 1.264 18 N -0.254 5.254 19 N -0.097 5.097 20 C -0.224 4.224 21 C 0.122 3.878 22 Cl -0.003 7.003 23 H 0.081 0.919 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.183 0.817 29 H 0.031 0.969 30 H 0.037 0.963 31 H 0.263 0.737 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.181 -18.330 17.844 27.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.145 5.145 3 N -0.069 5.069 4 C -0.102 4.102 5 C 0.083 3.917 6 N -0.098 5.098 7 C -0.222 4.222 8 C -0.099 4.099 9 C 0.021 3.979 10 C -0.544 4.544 11 H 0.094 0.906 12 C -0.134 4.134 13 N -0.541 5.541 14 Si 0.703 3.297 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.189 1.189 18 N -0.121 5.121 19 N -0.075 5.075 20 C -0.255 4.255 21 C -0.031 4.031 22 Cl 0.025 6.975 23 H 0.100 0.900 24 H 0.116 0.884 25 H 0.109 0.891 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.200 0.800 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.265 -18.538 16.748 27.831 hybrid contribution 0.026 0.673 1.071 1.266 sum -12.239 -17.865 17.820 28.044 Atomic orbital electron populations 1.22021 0.73311 1.05341 1.03979 1.48675 1.07155 1.02137 1.56518 1.77606 1.01158 1.05422 1.22681 1.21938 0.93275 0.93488 1.01468 1.20120 0.94044 0.90069 0.87445 1.46998 1.49365 1.06039 1.07356 1.23307 1.13723 0.83589 1.01628 1.22454 1.00755 0.98033 0.88642 1.18139 0.98673 0.84006 0.97102 1.20939 1.16692 0.96743 1.19994 0.90550 1.24979 0.95112 0.98557 0.94734 1.69905 1.32804 1.23909 1.27448 0.86832 0.81656 0.82798 0.78364 1.20224 1.21288 1.18900 1.75100 1.16238 0.95354 1.25451 1.78259 1.19677 1.22788 0.86819 1.20972 0.95453 0.94011 1.15070 1.21649 0.91373 0.83130 1.06953 1.98412 1.90646 1.11406 1.97040 0.90020 0.88362 0.89085 0.86331 0.86108 0.79981 0.95119 0.94531 0.92729 0.81842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 11.31 59.85 0.68 1.35 16 2 N -0.36 -4.01 4.01 -64.90 -0.26 -4.27 16 3 N -0.24 -3.37 12.57 33.67 0.42 -2.95 16 4 C 0.06 0.79 6.59 -82.41 -0.54 0.24 16 5 C 0.21 2.25 7.03 -5.19 -0.04 2.21 16 6 N -0.30 -5.04 3.43 -62.44 -0.21 -5.26 16 7 C -0.07 -1.32 11.49 -17.05 -0.20 -1.52 16 8 C 0.04 0.87 6.44 -82.78 -0.53 0.34 16 9 C 0.06 1.49 4.62 -29.03 -0.13 1.35 16 10 C -0.51 -14.97 9.64 -34.44 -0.33 -15.30 16 11 H 0.08 2.52 7.98 -52.49 -0.42 2.10 16 12 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 13 N -0.90 -28.40 13.96 55.43 0.77 -27.63 16 14 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 17 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 18 N -0.25 -6.22 12.40 33.29 0.41 -5.80 16 19 N -0.10 -2.03 12.92 60.35 0.78 -1.25 16 20 C -0.22 -2.34 10.71 -39.97 -0.43 -2.76 16 21 C 0.12 1.25 7.46 -17.15 -0.13 1.13 16 22 Cl 0.00 -0.02 28.76 -51.86 -1.49 -1.51 16 23 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.09 0.49 7.80 -51.93 -0.41 0.08 16 26 H 0.12 0.97 8.12 -51.93 -0.42 0.54 16 27 H 0.12 0.91 8.07 -51.93 -0.42 0.49 16 28 H 0.18 2.45 8.06 -52.48 -0.42 2.03 16 29 H 0.03 0.70 7.56 -51.93 -0.39 0.30 16 30 H 0.04 0.92 7.19 -51.93 -0.37 0.55 16 31 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 32 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 304.47 15.07 4.59 4.59 Total: -1.00 -37.61 304.47 -4.70 -42.31 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: -3.29 Total: -4.08 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -1.75 Total: -11.07 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 1.91 Total: -47.15 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.49 Total: -1.51 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -37.61 -4.70 -42.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881300385.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.718 kcal (2) G-P(sol) polarization free energy of solvation -37.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds