Wall clock time and date at job start Tue Mar 31 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40075 * 126.03773 * 2 1 4 4 C 1.30836 * 108.24111 * 180.15246 * 3 2 1 5 5 C 1.50699 * 125.89245 * 179.88617 * 4 3 2 6 6 N 1.46503 * 109.47269 * 304.69297 * 5 4 3 7 7 C 1.35312 * 125.86851 * 124.99868 * 6 5 4 8 8 C 1.35341 * 106.17598 * 180.02562 * 7 6 5 9 9 C 1.50700 * 126.75090 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46869 * 125.00400 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 9 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 9 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 N 1.33772 * 106.49948 * 0.26771 * 8 7 6 19 19 N 1.28637 * 108.88114 * 359.55958 * 18 8 7 20 20 C 1.39858 * 108.21524 * 359.62555 * 4 3 2 21 21 C 1.34986 * 126.03466 * 179.73710 * 2 1 3 22 22 Cl 1.73598 * 126.14289 * 0.03117 * 21 2 1 23 23 H 1.09000 * 109.47007 * 270.26411 * 1 2 3 24 24 H 1.09003 * 109.47243 * 30.26672 * 1 2 3 25 25 H 1.09003 * 109.46962 * 150.26499 * 1 2 3 26 26 H 1.09004 * 109.46863 * 184.69531 * 5 4 3 27 27 H 1.08991 * 109.47272 * 64.69534 * 5 4 3 28 28 H 1.08004 * 126.90917 * 0.06144 * 7 6 5 29 29 H 1.09004 * 109.47210 * 5.00693 * 9 8 7 30 30 H 1.08994 * 109.47551 * 245.00345 * 9 8 7 31 31 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 32 32 H 1.08007 * 126.04952 * 180.21218 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5348 0.7328 -0.0033 5 6 4.7492 1.6252 -0.0069 6 7 4.6741 2.5475 -1.1427 7 6 4.7464 3.8970 -1.0743 8 6 4.6335 4.3456 -2.3462 9 6 4.6542 5.7822 -2.8008 10 6 5.7239 5.9627 -3.8468 11 1 6.3281 5.1212 -4.1522 12 6 5.9272 7.2009 -4.4186 13 7 6.8571 7.3571 -5.3354 14 14 4.8818 8.6562 -3.8908 15 1 5.5372 9.3497 -2.7529 16 1 4.7368 9.5999 -5.0284 17 1 3.5405 8.1762 -3.4719 18 7 4.4934 3.2632 -3.1198 19 7 4.5272 2.2135 -2.3770 20 6 3.5451 -0.6657 0.0032 21 6 2.2591 -1.0916 0.0050 22 17 1.7278 -2.7442 0.0118 23 1 -0.3633 0.0047 1.0277 24 1 -0.3634 0.8876 -0.5180 25 1 -0.3633 -0.8924 -0.5097 26 1 5.6483 1.0149 -0.0934 27 1 4.7844 2.1946 0.9217 28 1 4.8701 4.4956 -0.1839 29 1 4.8653 6.4297 -1.9497 30 1 3.6843 6.0434 -3.2242 31 1 7.0003 8.2282 -5.7373 32 1 4.4230 -1.2949 0.0057 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881300385.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:03 Heat of formation + Delta-G solvation = 149.430345 kcal Electronic energy + Delta-G solvation = -18590.098265 eV Core-core repulsion = 15422.132136 eV Total energy + Delta-G solvation = -3167.966129 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.074 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.03231 -42.42264 -38.01888 -36.51458 -35.27995 -34.07040 -33.08077 -31.18531 -30.22189 -29.42903 -26.77129 -25.07426 -23.10921 -22.45160 -22.18235 -20.81369 -18.88965 -18.54928 -17.98839 -17.11888 -16.83218 -16.27586 -15.82897 -15.50399 -15.21863 -15.08693 -14.55853 -14.33152 -13.97049 -13.86009 -13.64637 -13.47404 -13.02802 -12.82926 -12.67264 -12.42410 -12.33257 -11.89356 -11.80588 -11.60288 -11.41612 -10.93481 -10.71404 -10.41198 -9.83014 -9.77577 -8.22318 -6.27254 0.30373 0.41946 0.77707 1.14772 1.42061 1.46659 1.52874 1.58245 1.79344 1.92430 2.42834 3.10062 3.11787 3.63846 3.66663 3.94548 4.17441 4.21452 4.25266 4.30695 4.45673 4.47749 4.53887 4.64288 4.77879 5.08061 5.26154 5.36563 5.40290 5.56608 5.64793 5.83761 6.31585 6.35177 6.78038 7.34344 7.74874 8.95589 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.039389 B = 0.003222 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.689069 B = 8687.730171 C = 8917.523004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.365 5.365 3 N -0.287 5.287 4 C 0.054 3.946 5 C 0.194 3.806 6 N -0.283 5.283 7 C -0.040 4.040 8 C -0.011 4.011 9 C 0.067 3.933 10 C -0.517 4.517 11 H 0.018 0.982 12 C 0.001 3.999 13 N -0.956 5.956 14 Si 0.959 3.041 15 H -0.254 1.254 16 H -0.288 1.288 17 H -0.244 1.244 18 N -0.313 5.313 19 N -0.116 5.116 20 C -0.232 4.232 21 C 0.117 3.883 22 Cl 0.017 6.983 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.107 0.893 26 H 0.149 0.851 27 H 0.163 0.837 28 H 0.234 0.766 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.267 0.733 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.351 -18.344 21.019 30.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.150 5.150 3 N -0.113 5.113 4 C -0.112 4.112 5 C 0.073 3.927 6 N -0.079 5.079 7 C -0.190 4.190 8 C -0.149 4.149 9 C 0.028 3.972 10 C -0.555 4.555 11 H 0.037 0.963 12 C -0.194 4.194 13 N -0.597 5.597 14 Si 0.781 3.219 15 H -0.178 1.178 16 H -0.214 1.214 17 H -0.168 1.168 18 N -0.179 5.179 19 N -0.095 5.095 20 C -0.263 4.263 21 C -0.037 4.037 22 Cl 0.045 6.955 23 H 0.120 0.880 24 H 0.111 0.889 25 H 0.126 0.874 26 H 0.167 0.833 27 H 0.180 0.820 28 H 0.251 0.749 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -13.448 -18.614 19.947 30.417 hybrid contribution 0.398 0.450 0.140 0.617 sum -13.049 -18.165 20.087 30.062 Atomic orbital electron populations 1.22313 0.71671 1.05941 1.05534 1.48944 1.08205 1.01845 1.56028 1.77507 1.02190 1.07235 1.24331 1.22157 0.93146 0.94357 1.01503 1.20847 0.94876 0.90218 0.86745 1.47418 1.46273 1.06726 1.07442 1.23853 1.09768 0.84134 1.01265 1.22395 1.04479 0.97119 0.90881 1.17958 0.96277 0.86434 0.96483 1.21146 1.17486 0.95236 1.21668 0.96310 1.26079 0.96554 1.02352 0.94464 1.70091 1.35173 1.25110 1.29280 0.85540 0.80233 0.77687 0.78439 1.17795 1.21363 1.16782 1.75010 1.18429 0.96657 1.27838 1.78119 1.20890 1.21958 0.88515 1.21320 0.96420 0.93738 1.14779 1.21894 0.91544 0.83980 1.06303 1.98419 1.90481 1.09648 1.96915 0.87973 0.88856 0.87430 0.83347 0.81965 0.74921 0.92052 0.95196 0.92460 0.79657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 11.31 127.77 1.44 2.54 16 2 N -0.36 -7.62 4.01 -359.25 -1.44 -9.07 16 3 N -0.29 -7.50 12.57 -47.39 -0.60 -8.10 16 4 C 0.05 1.19 6.59 43.10 0.28 1.48 16 5 C 0.19 3.56 7.03 85.63 0.60 4.16 16 6 N -0.28 -8.87 3.43 -351.47 -1.21 -10.07 16 7 C -0.04 -1.32 11.49 83.49 0.96 -0.36 16 8 C -0.01 -0.48 6.44 41.59 0.27 -0.21 16 9 C 0.07 3.32 4.62 29.10 0.13 3.46 16 10 C -0.52 -31.66 9.64 25.60 0.25 -31.41 16 11 H 0.02 1.31 7.98 -2.91 -0.02 1.29 16 12 C 0.00 0.09 5.47 84.66 0.46 0.55 16 13 N -0.96 -62.25 13.96 21.45 0.30 -61.95 16 14 Si 0.96 44.27 27.47 68.60 1.88 46.15 16 15 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 16 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 17 H -0.24 -10.42 6.54 99.48 0.65 -9.77 16 18 N -0.31 -15.75 12.40 -48.60 -0.60 -16.35 16 19 N -0.12 -4.88 12.92 37.02 0.48 -4.40 16 20 C -0.23 -4.35 10.71 22.02 0.24 -4.12 16 21 C 0.12 2.19 7.46 83.57 0.62 2.81 16 22 Cl 0.02 0.24 28.76 -2.72 -0.08 0.16 16 23 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.11 0.98 7.80 -2.39 -0.02 0.96 16 26 H 0.15 1.86 8.12 -2.38 -0.02 1.84 16 27 H 0.16 1.62 8.07 -2.39 -0.02 1.60 16 28 H 0.23 5.01 8.06 -2.91 -0.02 4.99 16 29 H 0.06 2.61 7.56 -2.38 -0.02 2.59 16 30 H 0.03 1.49 7.19 -2.39 -0.02 1.47 16 31 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 32 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -87.64 304.47 5.09 -82.55 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: 1.09 Total: 2.20 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 5.26 Total: -21.11 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -3.07 Total: -109.95 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.15 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -0.08 Total: 0.16 kcal Total: -87.64 5.09 -82.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881300385.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.976 kcal (2) G-P(sol) polarization free energy of solvation -87.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds