Wall clock time and date at job start Tue Mar 31 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47176 * 2 1 4 4 H 1.08998 * 109.47211 * 54.99746 * 3 2 1 5 5 C 1.50693 * 109.47184 * 175.00393 * 3 2 1 6 6 H 1.07999 * 120.00117 * 120.00124 * 5 3 2 7 7 C 1.37878 * 119.99699 * 299.99400 * 5 3 2 8 8 N 1.31513 * 119.99789 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99960 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47310 * 89.99987 * 9 7 5 11 11 H 1.48508 * 109.46775 * 209.99465 * 9 7 5 12 12 H 1.48491 * 109.47100 * 329.99308 * 9 7 5 13 13 N 1.46507 * 109.46827 * 295.00145 * 3 2 1 14 14 C 1.38387 * 119.99979 * 85.00065 * 13 3 2 15 15 N 1.32904 * 120.76178 * 0.02562 * 14 13 3 16 16 C 1.32155 * 121.18136 * 180.02562 * 15 14 13 17 17 Cl 1.73599 * 118.79011 * 179.97438 * 16 15 14 18 18 N 1.31774 * 122.42385 * 359.97438 * 16 15 14 19 19 C 1.32905 * 120.62680 * 0.02562 * 18 16 15 20 20 N 1.37197 * 134.89824 * 179.97438 * 19 18 16 21 21 H 0.97002 * 126.27450 * 359.97438 * 20 19 18 22 22 C 1.36340 * 107.44351 * 180.02562 * 20 19 18 23 23 N 1.30126 * 109.97505 * 359.97438 * 22 20 19 24 24 C 1.35502 * 109.44210 * 359.97438 * 23 22 20 25 25 H 1.09008 * 109.47146 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46945 * 299.99539 * 1 2 3 27 27 H 1.08995 * 109.47250 * 60.00062 * 1 2 3 28 28 H 1.09002 * 109.46875 * 239.99683 * 2 1 3 29 29 H 1.08995 * 109.47250 * 119.99938 * 2 1 3 30 30 H 0.97006 * 119.99939 * 180.02562 * 8 7 5 31 31 H 0.96994 * 119.99853 * 264.99586 * 13 3 2 32 32 H 1.07994 * 125.01327 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 5.4540 0.8796 1.3357 9 14 3.0964 0.1090 2.5701 10 1 2.8755 -1.3271 2.2635 11 1 3.7938 0.2349 3.8751 12 1 1.7878 0.8075 2.6387 13 7 1.6524 2.0974 -1.2519 14 6 0.4025 2.6795 -1.3701 15 7 -0.4579 2.6537 -0.3574 16 6 -1.6538 3.2065 -0.4614 17 17 -2.7287 3.1359 0.8999 18 7 -2.0604 3.8093 -1.5604 19 6 -1.2676 3.8842 -2.6245 20 7 -1.3819 4.4226 -3.8812 21 1 -2.1532 4.8911 -4.2369 22 6 -0.2129 4.1773 -4.5387 23 7 0.6046 3.5256 -3.7640 24 6 0.0143 3.3122 -2.5631 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8771 0.4811 2.1123 31 1 2.2719 2.1231 -1.9978 32 1 0.0030 4.4800 -5.5526 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893187694.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:04 Heat of formation + Delta-G solvation = 104.349756 kcal Electronic energy + Delta-G solvation = -19814.738504 eV Core-core repulsion = 16644.817534 eV Total energy + Delta-G solvation = -3169.920970 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.074 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.39306 -39.24039 -37.12060 -36.35727 -33.91492 -32.40051 -31.81184 -31.54446 -29.19916 -27.27592 -23.95948 -23.67255 -22.57551 -21.49340 -20.35359 -19.43849 -17.84770 -17.26018 -16.39831 -16.04164 -15.69863 -15.01166 -14.77923 -14.30669 -14.08439 -13.81795 -13.38439 -12.85244 -12.24612 -11.87918 -11.70382 -11.56695 -11.27327 -11.21817 -11.12712 -10.86680 -10.67564 -10.30580 -9.99249 -9.66379 -9.52441 -9.27947 -9.03223 -8.85622 -8.67562 -7.36953 -6.23605 -4.27456 0.92136 1.49889 1.55317 2.66259 2.74528 3.22228 3.34531 3.38498 3.59066 4.00988 4.14903 4.28963 4.57619 4.65573 4.94682 5.09400 5.49786 5.69844 5.91915 5.99920 6.11376 6.28790 6.57439 6.66945 6.75077 6.80559 6.88475 7.10912 7.26371 7.38895 7.51664 7.75030 7.98151 8.34456 8.46297 8.76222 9.34971 10.88236 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.006550 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.781559 B = 4273.634360 C = 5383.363894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.138 4.138 3 C 0.241 3.759 4 H 0.060 0.940 5 C -0.540 4.540 6 H 0.081 0.919 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.881 3.119 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.256 1.256 13 N -0.641 5.641 14 C 0.524 3.476 15 N -0.569 5.569 16 C 0.437 3.563 17 Cl 0.018 6.982 18 N -0.572 5.572 19 C 0.314 3.686 20 N -0.580 5.580 21 H 0.428 0.572 22 C 0.235 3.765 23 N -0.450 5.450 24 C -0.118 4.118 25 H 0.032 0.968 26 H 0.061 0.939 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.268 0.732 31 H 0.417 0.583 32 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.722 5.238 -8.760 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.078 0.922 5 C -0.578 4.578 6 H 0.099 0.901 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.710 3.290 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.180 1.180 13 N -0.264 5.264 14 C 0.269 3.731 15 N -0.303 5.303 16 C 0.139 3.861 17 Cl 0.046 6.954 18 N -0.304 5.304 19 C 0.073 3.927 20 N -0.196 5.196 21 H 0.267 0.733 22 C -0.053 4.053 23 N -0.168 5.168 24 C -0.246 4.246 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.255 0.745 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -14.205 4.724 -7.810 16.885 hybrid contribution -0.956 0.091 -0.169 0.976 sum -15.162 4.815 -7.979 17.797 Atomic orbital electron populations 1.21876 0.96864 0.99088 1.02023 1.22292 0.94457 0.99565 1.01368 1.19435 0.96013 0.88803 0.81999 0.92193 1.21000 0.88322 1.40303 1.08134 0.90064 1.24805 0.94887 0.94999 0.97607 1.69865 1.08721 1.44157 1.29805 0.86925 0.81146 0.80014 0.80875 1.20189 1.22100 1.18007 1.45391 1.10027 1.52376 1.18585 1.17656 0.86658 0.84395 0.84399 1.67720 1.03727 1.28792 1.30108 1.21948 0.87176 0.89700 0.87248 1.98406 1.61415 1.96525 1.39034 1.66440 1.37371 1.27744 0.98886 1.18285 0.91549 0.95740 0.87154 1.42692 1.17870 1.48993 1.10008 0.73295 1.25299 0.80974 0.99493 0.99520 1.70178 1.30042 1.15777 1.00848 1.19652 0.95930 1.12952 0.96100 0.94852 0.92031 0.93850 0.92273 0.92366 0.92186 0.74454 0.76009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.45 37.16 0.31 -2.39 16 2 C -0.14 -2.97 5.11 -26.73 -0.14 -3.11 16 3 C 0.24 5.52 1.84 -69.08 -0.13 5.39 16 4 H 0.06 1.47 6.63 -51.93 -0.34 1.13 16 5 C -0.54 -14.38 9.31 -34.44 -0.32 -14.70 16 6 H 0.08 2.32 7.98 -52.49 -0.42 1.90 16 7 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 8 N -0.89 -26.08 13.96 55.43 0.77 -25.31 16 9 Si 0.88 21.14 24.41 -169.99 -4.15 16.99 16 10 H -0.28 -6.42 6.83 56.52 0.39 -6.03 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.26 -5.95 6.53 56.52 0.37 -5.58 16 13 N -0.64 -13.05 5.14 -54.72 -0.28 -13.33 16 14 C 0.52 10.10 6.08 -154.66 -0.94 9.16 16 15 N -0.57 -10.96 6.58 -10.68 -0.07 -11.03 16 16 C 0.44 7.65 8.16 -91.86 -0.75 6.90 16 17 Cl 0.02 0.27 29.25 -51.86 -1.52 -1.24 16 18 N -0.57 -9.50 10.43 -10.96 -0.11 -9.62 16 19 C 0.31 4.87 8.51 -155.80 -1.33 3.54 16 20 N -0.58 -6.02 6.20 -13.25 -0.08 -6.11 16 21 H 0.43 2.79 8.96 -40.82 -0.37 2.42 16 22 C 0.23 2.36 12.98 -89.49 -1.16 1.20 16 23 N -0.45 -6.78 11.28 -11.84 -0.13 -6.92 16 24 C -0.12 -2.04 7.16 -84.53 -0.61 -2.65 16 25 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.06 1.20 7.69 -51.93 -0.40 0.80 16 27 H 0.04 0.83 5.59 -51.93 -0.29 0.54 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 1.32 3.21 -51.93 -0.17 1.15 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.42 8.20 8.56 -40.82 -0.35 7.85 16 32 H 0.22 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 282.06 15.07 4.25 4.25 Total: -1.00 -31.48 282.06 -9.26 -40.74 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -2.79 Total: 6.08 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -5.15 Total: 5.49 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: 0.09 Total: -72.31 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.15 Total: 16.99 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.24 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.48 -9.26 -40.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893187694.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.087 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds